Wall clock time and date at job start Mon Mar 30 2020 02:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99705 * 2 1 4 4 N 1.46506 * 109.47097 * 125.00288 * 3 2 1 5 5 C 1.46499 * 119.99936 * 269.99906 * 4 3 2 6 6 C 1.50700 * 109.46912 * 269.99851 * 5 4 3 7 7 H 1.07996 * 119.99893 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99705 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00204 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46745 * 60.00119 * 10 8 6 12 12 H 1.48498 * 109.47203 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47012 * 300.00234 * 10 8 6 14 14 C 1.34777 * 120.00000 * 89.99359 * 4 3 2 15 15 O 1.21613 * 119.99910 * 180.02562 * 14 4 3 16 16 C 1.47104 * 120.00058 * 0.02562 * 14 4 3 17 17 C 1.32991 * 119.99556 * 180.27387 * 16 14 4 18 18 C 1.50707 * 119.99627 * 179.71911 * 17 16 14 19 19 C 1.52996 * 109.47075 * 239.99832 * 18 17 16 20 20 C 1.53003 * 109.46737 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47011 * 60.00220 * 20 19 18 22 22 C 1.52993 * 109.47313 * 299.99866 * 21 20 19 23 23 C 1.52998 * 109.47135 * 59.99816 * 22 21 20 24 24 H 1.08000 * 119.99702 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99763 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.00088 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.47733 * 5.00000 * 3 2 1 28 28 H 1.09002 * 109.46978 * 244.99425 * 3 2 1 29 29 H 1.09006 * 109.46623 * 29.99904 * 5 4 3 30 30 H 1.09003 * 109.47332 * 149.99391 * 5 4 3 31 31 H 0.97000 * 120.00290 * 179.97438 * 9 8 6 32 32 H 1.08002 * 119.99781 * 359.97438 * 16 14 4 33 33 H 1.07992 * 120.00607 * 359.72198 * 17 16 14 34 34 H 1.08998 * 109.47086 * 0.02562 * 18 17 16 35 35 H 1.08998 * 109.47410 * 300.00103 * 19 18 17 36 36 H 1.08999 * 109.47475 * 60.00415 * 19 18 17 37 37 H 1.08998 * 109.47298 * 300.00225 * 20 19 18 38 38 H 1.09005 * 109.46705 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47208 * 179.97438 * 21 20 19 40 40 H 1.09007 * 109.47032 * 59.99782 * 21 20 19 41 41 H 1.09007 * 109.47003 * 299.99934 * 22 21 20 42 42 H 1.09004 * 109.47204 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.46868 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.46976 * 60.00167 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5590 1.8649 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3033 3.8370 1.6365 8 6 2.5185 4.0667 3.6082 9 7 1.9591 3.4659 4.6357 10 14 2.8729 5.8995 3.6774 11 1 2.1380 6.5872 2.5855 12 1 2.4320 6.4398 4.9884 13 1 4.3310 6.1282 3.5133 14 6 4.2498 0.8662 0.9824 15 8 5.0219 0.8880 1.9217 16 6 4.6866 0.3314 -0.3165 17 6 5.9242 -0.1332 -0.4620 18 6 6.3697 -0.6870 -1.7910 19 6 6.7860 -2.1493 -1.6204 20 6 7.2378 -2.7115 -2.9698 21 6 8.4266 -1.8999 -3.4883 22 6 8.0104 -0.4376 -3.6587 23 6 7.5586 0.1246 -2.3094 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4026 -0.9314 29 1 1.4888 1.6966 2.5459 30 1 3.0990 1.3603 3.2260 31 1 1.7302 3.9745 5.4293 32 1 4.0007 0.3116 -1.1506 33 1 6.6099 -0.1138 0.3721 34 1 5.5485 -0.6235 -2.5048 35 1 7.6074 -2.2124 -0.9068 36 1 5.9390 -2.7276 -1.2516 37 1 6.4161 -2.6485 -3.6832 38 1 7.5339 -3.7535 -2.8484 39 1 8.7488 -2.3007 -4.4493 40 1 9.2484 -1.9630 -2.7748 41 1 7.1886 -0.3746 -4.3722 42 1 8.8573 0.1405 -4.0285 43 1 7.2616 1.1664 -2.4310 44 1 8.3803 0.0616 -1.5961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492880341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:37 Heat of formation + Delta-G solvation = -44.968837 kcal Electronic energy + Delta-G solvation = -21339.045161 eV Core-core repulsion = 18255.309919 eV Total energy + Delta-G solvation = -3083.735242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79318 -39.52030 -37.26381 -35.27074 -34.69700 -33.67228 -31.59204 -30.96665 -29.38056 -26.93778 -25.70192 -23.75003 -23.38713 -21.60596 -20.85066 -20.73730 -19.50421 -18.66385 -18.09793 -17.30984 -16.34889 -16.23871 -16.09376 -15.54944 -15.03916 -15.00395 -14.98120 -14.50586 -14.34094 -14.15151 -13.53701 -13.46121 -13.19508 -13.03096 -13.00896 -12.92100 -12.76772 -12.57585 -12.26123 -12.21170 -11.98108 -11.89791 -11.71232 -11.32906 -11.15757 -11.14189 -10.66339 -10.61164 -10.32072 -10.26240 -9.45544 -8.23705 -6.39367 0.47664 1.32843 1.35611 1.39943 1.47542 2.30208 2.48018 2.53053 3.05299 3.56161 3.81158 3.93727 3.96954 4.11626 4.13124 4.26244 4.33755 4.41229 4.41974 4.52546 4.63015 4.65564 4.67621 4.78328 4.84248 4.95134 4.99402 5.05535 5.18613 5.18702 5.20115 5.29873 5.30806 5.36375 5.47223 5.47492 5.50359 5.57612 5.65469 5.71186 5.76723 5.96001 6.04579 6.67913 6.77322 7.25940 7.46042 8.83375 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.003875 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.543664 B = 7223.309833 C = 8084.926549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.594 5.594 5 C 0.264 3.736 6 C -0.546 4.546 7 H 0.053 0.947 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.258 1.258 12 H -0.276 1.276 13 H -0.278 1.278 14 C 0.523 3.477 15 O -0.607 6.607 16 C -0.214 4.214 17 C -0.055 4.055 18 C -0.054 4.054 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.114 4.114 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.022 0.978 30 H -0.006 1.006 31 H 0.268 0.732 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.029 -10.950 -20.679 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.323 5.323 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.071 0.929 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.183 1.183 12 H -0.201 1.201 13 H -0.204 1.204 14 C 0.314 3.686 15 O -0.491 6.491 16 C -0.234 4.234 17 C -0.075 4.075 18 C -0.073 4.073 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.151 4.151 24 H 0.117 0.883 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.040 0.960 30 H 0.012 0.988 31 H 0.077 0.923 32 H 0.175 0.825 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.303 -10.885 -20.012 23.636 hybrid contribution -0.009 1.000 1.072 1.466 sum 6.294 -9.884 -18.940 22.272 Atomic orbital electron populations 1.24052 0.95457 1.02899 0.98314 1.23332 0.96797 0.98198 1.01867 1.20861 0.92512 0.96353 0.89171 1.48124 1.11690 1.59335 1.13146 1.18689 0.93785 0.92790 0.80444 1.21682 1.40841 0.94370 1.01570 0.92872 1.25892 0.94532 1.03996 0.94736 1.70052 1.42678 1.38296 1.05771 0.85445 0.78508 0.78702 0.78025 1.18270 1.20139 1.20357 1.19427 0.81601 0.77793 0.89736 1.90699 1.54322 1.59650 1.44464 1.22759 0.99157 1.05755 0.95742 1.23845 0.94706 0.90258 0.98686 1.20435 0.99219 0.95513 0.92086 1.21551 1.01103 0.93789 0.98533 1.21516 0.98506 0.99307 0.95868 1.21568 0.97822 0.95012 1.01439 1.21514 1.01454 0.96187 0.96057 1.21560 0.96844 0.98914 0.97805 0.88289 0.86454 0.86910 0.90510 0.87471 0.96043 0.98801 0.92328 0.82545 0.88286 0.88838 0.92335 0.91879 0.91142 0.91188 0.90872 0.92402 0.91152 0.91311 0.92144 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 14.32 67.77 0.97 -3.23 16 2 C -0.18 -5.15 9.85 25.64 0.25 -4.90 16 3 C 0.13 4.41 5.56 85.63 0.48 4.89 16 4 N -0.59 -26.99 2.44 -834.77 -2.04 -29.03 16 5 C 0.26 15.02 5.16 85.63 0.44 15.46 16 6 C -0.55 -32.72 9.39 25.60 0.24 -32.48 16 7 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.44 5.46 84.65 0.46 0.90 16 9 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 10 Si 0.97 45.91 29.54 68.60 2.03 47.93 16 11 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 C 0.52 23.70 7.62 86.57 0.66 24.36 16 15 O -0.61 -34.00 15.80 -4.07 -0.06 -34.06 16 16 C -0.21 -6.73 8.82 23.43 0.21 -6.53 16 17 C -0.05 -1.53 8.35 24.52 0.20 -1.33 16 18 C -0.05 -1.03 2.48 -11.54 -0.03 -1.06 16 19 C -0.11 -1.91 5.19 30.59 0.16 -1.75 16 20 C -0.11 -1.46 5.92 30.60 0.18 -1.28 16 21 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 22 C -0.11 -1.52 5.92 30.59 0.18 -1.34 16 23 C -0.11 -2.02 5.19 30.59 0.16 -1.86 16 24 H 0.10 2.45 7.84 -2.91 -0.02 2.42 16 25 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 26 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 27 H 0.08 2.67 7.72 -2.39 -0.02 2.65 16 28 H 0.11 2.83 6.09 -2.39 -0.01 2.81 16 29 H 0.02 1.24 8.07 -2.38 -0.02 1.22 16 30 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.16 3.73 6.03 -2.91 -0.02 3.71 16 33 H 0.10 3.29 7.49 -2.91 -0.02 3.27 16 34 H 0.09 1.53 7.81 -2.39 -0.02 1.51 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -75.47 359.67 5.89 -69.57 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.94 Total: 14.39 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.75 Total: -11.45 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.75 Total: -86.39 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.06 Total: -34.06 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -75.47 5.89 -69.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492880341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.606 kcal (2) G-P(sol) polarization free energy of solvation -75.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds