Wall clock time and date at job start Mon Mar 30 2020 02:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 115.54894 * 2 1 4 4 C 1.52995 * 117.50117 * 145.70848 * 2 1 3 5 5 H 1.08994 * 117.50285 * 214.97812 * 4 2 1 6 6 C 1.53004 * 117.49609 * 0.02562 * 4 2 1 7 7 C 1.53003 * 117.49713 * 197.36762 * 6 4 2 8 8 C 1.52999 * 117.49981 * 128.70893 * 6 4 2 9 9 C 1.52997 * 60.00124 * 107.48967 * 4 2 1 10 10 H 1.09003 * 117.51599 * 107.48376 * 9 4 2 11 11 C 1.50698 * 117.49869 * 252.51151 * 9 4 2 12 12 O 1.21276 * 120.00423 * 0.02562 * 11 9 4 13 13 N 1.34782 * 120.00035 * 180.02562 * 11 9 4 14 14 C 1.46495 * 120.00029 * 179.97438 * 13 11 9 15 15 C 1.50702 * 109.47574 * 269.99868 * 14 13 11 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 14 20 20 H 1.48494 * 109.47225 * 180.27306 * 19 17 15 21 21 H 1.48506 * 109.46866 * 300.27330 * 19 17 15 22 22 H 1.48498 * 109.47306 * 60.26614 * 19 17 15 23 23 C 1.46504 * 119.99774 * 0.02562 * 13 11 9 24 24 C 1.52998 * 109.47053 * 269.99768 * 23 13 11 25 25 C 1.52998 * 117.49920 * 243.74752 * 24 23 13 26 26 C 1.52996 * 117.49789 * 175.08473 * 24 23 13 27 27 H 1.09001 * 109.47192 * 154.27488 * 1 2 3 28 28 H 1.09000 * 109.47369 * 274.27700 * 1 2 3 29 29 H 1.08997 * 109.47157 * 34.28019 * 1 2 3 30 30 H 1.08999 * 115.55064 * 343.03610 * 6 4 2 31 31 H 1.08999 * 117.50205 * 0.02562 * 7 6 4 32 32 H 1.09004 * 117.49492 * 145.01925 * 7 6 4 33 33 H 1.08998 * 117.50012 * 214.98038 * 8 6 4 34 34 H 1.09008 * 117.49796 * 359.97438 * 8 6 4 35 35 H 1.09009 * 109.47230 * 150.00208 * 14 13 11 36 36 H 1.08998 * 109.47557 * 30.00700 * 14 13 11 37 37 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 38 38 H 1.08994 * 109.47131 * 30.00106 * 23 13 11 39 39 H 1.09000 * 109.46811 * 149.99902 * 23 13 11 40 40 H 1.08999 * 115.55125 * 29.42061 * 24 23 13 41 41 H 1.08995 * 117.50074 * 359.97438 * 25 24 23 42 42 H 1.09000 * 117.49622 * 145.02657 * 25 24 23 43 43 H 1.08997 * 117.50286 * 214.97841 * 26 24 23 44 44 H 1.09001 * 117.50211 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 0.7646 5 1 3.1715 -0.8756 1.2679 6 6 1.3588 -2.1570 1.4702 7 6 2.0144 -3.0207 2.5496 8 6 1.6492 -3.6338 1.1954 9 6 2.2364 -1.1207 -0.7654 10 1 3.1713 -0.8746 -1.2689 11 6 1.3720 -2.1401 -1.4615 12 8 0.7102 -2.9202 -0.8102 13 7 1.3343 -2.1849 -2.8081 14 6 0.4945 -3.1762 -3.4848 15 6 1.2904 -4.4347 -3.7167 16 1 2.3189 -4.4906 -3.3920 17 6 0.7056 -5.5146 -4.3433 18 7 -0.5470 -5.4467 -4.7382 19 14 1.6945 -7.0719 -4.6375 20 1 0.8449 -8.0746 -5.3288 21 1 2.8747 -6.7566 -5.4819 22 1 2.1502 -7.6223 -3.3357 23 6 2.1342 -1.2429 -3.5949 24 6 1.3130 0.0185 -3.8692 25 6 0.9724 0.3369 -5.3264 26 6 2.0138 1.1766 -4.5823 27 1 -0.3633 -0.9258 -0.4461 28 1 -0.3634 0.0766 1.0248 29 1 -0.3633 0.8491 -0.5788 30 1 0.3185 -1.8680 1.6199 31 1 3.0709 -2.8508 2.7573 32 1 1.4053 -3.3003 3.4092 33 1 0.8000 -4.3165 1.1646 34 1 2.4652 -3.8675 0.5115 35 1 0.1600 -2.7763 -4.4421 36 1 -0.3718 -3.4034 -2.8635 37 1 -1.0607 -4.6382 -4.5851 38 1 3.0335 -0.9773 -3.0393 39 1 2.4151 -1.7063 -4.5407 40 1 0.5698 0.2695 -3.1123 41 1 1.3338 -0.3521 -6.0898 42 1 0.0054 0.7977 -5.5281 43 1 1.7314 2.1894 -4.2950 44 1 3.0598 1.0397 -4.8565 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528416548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:45 Heat of formation + Delta-G solvation = 40.206569 kcal Electronic energy + Delta-G solvation = -22759.690498 eV Core-core repulsion = 19679.648739 eV Total energy + Delta-G solvation = -3080.041759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09735 -37.82933 -36.71507 -35.06303 -34.37517 -32.65868 -28.62364 -27.66471 -26.10390 -24.25723 -22.90132 -22.23148 -21.96537 -21.41574 -20.56725 -18.96417 -17.97784 -16.99389 -16.53028 -15.75791 -15.34218 -14.96904 -14.60108 -14.41787 -13.81248 -13.67724 -13.11224 -13.00975 -12.61329 -12.43870 -12.22980 -12.04613 -11.66474 -11.42994 -11.39166 -11.28236 -11.08648 -10.99366 -10.74156 -10.61982 -10.49498 -10.25558 -10.16798 -10.08747 -9.80181 -9.49945 -9.33572 -9.04846 -8.37538 -8.35911 -7.54728 -6.35355 -4.07113 3.19215 3.43398 3.47445 3.64652 3.75735 3.98059 4.04143 4.33643 4.55327 4.75016 4.87251 5.02346 5.03352 5.07754 5.18053 5.33725 5.35786 5.39799 5.50247 5.52203 5.62683 5.63213 5.70720 5.78564 5.84380 5.92988 5.96329 5.98192 6.02595 6.04399 6.10404 6.23524 6.25992 6.45477 6.50187 6.50665 6.67858 6.76613 6.90703 7.18178 7.49767 8.08283 8.38567 8.48023 8.81416 9.15243 9.62592 11.01617 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.007526 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.382771 B = 3719.565803 C = 5487.751559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.091 4.091 5 H 0.106 0.894 6 C -0.107 4.107 7 C -0.208 4.208 8 C -0.109 4.109 9 C -0.181 4.181 10 H 0.114 0.886 11 C 0.536 3.464 12 O -0.520 6.520 13 N -0.589 5.589 14 C 0.241 3.759 15 C -0.603 4.603 16 H 0.049 0.951 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 1.069 2.931 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.145 3.855 24 C -0.162 4.162 25 C -0.177 4.177 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.020 0.980 36 H 0.031 0.969 37 H 0.267 0.733 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 13.476 6.771 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.140 4.140 3 H 0.124 0.876 4 C -0.109 4.109 5 H 0.124 0.876 6 C -0.125 4.125 7 C -0.246 4.246 8 C -0.146 4.146 9 C -0.203 4.203 10 H 0.132 0.868 11 C 0.323 3.677 12 O -0.397 6.397 13 N -0.319 5.319 14 C 0.121 3.879 15 C -0.642 4.642 16 H 0.068 0.932 17 C -0.184 4.184 18 N -0.547 5.547 19 Si 0.897 3.103 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.214 1.214 23 C 0.020 3.980 24 C -0.181 4.181 25 C -0.214 4.214 26 C -0.218 4.218 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.556 11.490 6.444 14.297 hybrid contribution 0.299 1.734 0.407 1.806 sum 5.855 13.224 6.851 16.003 Atomic orbital electron populations 1.21438 0.92674 1.02878 1.01742 1.22274 0.95770 0.93236 1.02696 0.87603 1.21817 0.99816 0.98249 0.91053 0.87648 1.21381 0.98089 0.92366 1.00679 1.23261 1.00328 1.07115 0.93850 1.22516 1.02425 0.95088 0.94618 1.22536 1.01725 1.00956 0.95041 0.86828 1.19277 0.82537 0.83744 0.82153 1.90693 1.43767 1.41366 1.63861 1.47947 1.45453 1.33642 1.04891 1.19259 0.90772 0.86438 0.91445 1.22247 0.99824 0.99780 1.42342 0.93227 1.25755 0.97016 1.01924 0.93728 1.70802 1.08394 1.30805 1.44656 0.83546 0.74835 0.75478 0.76444 1.20700 1.21539 1.21427 1.20984 0.92468 0.87469 0.97055 1.22875 1.02844 0.96606 0.95795 1.23017 0.99705 1.03384 0.95341 1.22910 0.97989 0.95661 1.05239 0.90955 0.92142 0.92698 0.88124 0.89845 0.89756 0.89084 0.89723 0.96246 0.95078 0.92253 0.91207 0.90245 0.87958 0.88576 0.89237 0.89195 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.65 37.16 0.32 -1.47 16 2 C -0.12 -1.57 6.41 -90.62 -0.58 -2.15 16 3 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 4 C -0.09 -1.27 5.87 -90.62 -0.53 -1.81 16 5 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 6 C -0.11 -1.67 4.08 -90.62 -0.37 -2.04 16 7 C -0.21 -2.93 10.25 -26.69 -0.27 -3.20 16 8 C -0.11 -1.93 7.09 -26.69 -0.19 -2.12 16 9 C -0.18 -2.79 5.28 -91.77 -0.48 -3.28 16 10 H 0.11 1.57 6.44 -51.93 -0.33 1.23 16 11 C 0.54 10.79 5.92 -10.98 -0.07 10.72 16 12 O -0.52 -12.01 10.17 5.56 0.06 -11.96 16 13 N -0.59 -12.33 2.46 -175.06 -0.43 -12.76 16 14 C 0.24 6.21 4.47 -5.20 -0.02 6.18 16 15 C -0.60 -17.19 9.39 -34.44 -0.32 -17.51 16 16 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 17 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 18 N -0.91 -27.81 13.65 55.43 0.76 -27.06 16 19 Si 1.07 25.75 29.90 -169.99 -5.08 20.66 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.14 2.42 5.52 -4.04 -0.02 2.40 16 24 C -0.16 -2.32 6.01 -90.62 -0.54 -2.86 16 25 C -0.18 -2.37 10.18 -26.69 -0.27 -2.64 16 26 C -0.18 -2.06 10.25 -26.69 -0.27 -2.33 16 27 H 0.07 1.25 5.70 -51.93 -0.30 0.95 16 28 H 0.06 0.75 7.68 -51.93 -0.40 0.36 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.63 6.71 -51.93 -0.35 1.28 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.75 8.06 -51.93 -0.42 1.33 16 34 H 0.08 1.64 7.97 -51.92 -0.41 1.22 16 35 H 0.02 0.51 7.94 -51.92 -0.41 0.10 16 36 H 0.03 0.90 7.28 -51.93 -0.38 0.52 16 37 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 38 H 0.07 1.02 5.99 -51.93 -0.31 0.70 16 39 H 0.08 1.41 7.81 -51.93 -0.41 1.01 16 40 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.10 1.33 8.03 -51.93 -0.42 0.92 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -31.34 350.25 -10.59 -41.93 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.44 Total: 5.54 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -3.73 Total: -21.63 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.33 Total: -39.82 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.06 Total: -11.96 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.34 -10.59 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528416548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.134 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds