Wall clock time and date at job start Mon Mar 30 2020 02:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 115.54798 * 2 1 4 4 C 1.52996 * 117.49744 * 214.32922 * 2 1 3 5 5 H 1.09001 * 117.49671 * 145.00297 * 4 2 1 6 6 C 1.50693 * 117.50323 * 359.97438 * 4 2 1 7 7 O 1.21290 * 120.00370 * 298.88563 * 6 4 2 8 8 N 1.34776 * 120.00116 * 118.87729 * 6 4 2 9 9 C 1.37100 * 119.99890 * 5.81153 * 8 6 4 10 10 H 1.08001 * 120.00610 * 127.83371 * 9 8 6 11 11 C 1.38951 * 120.00035 * 307.83461 * 9 8 6 12 12 N 1.31414 * 119.99769 * 339.13454 * 11 9 8 13 13 Si 1.86801 * 120.00195 * 159.12981 * 11 9 8 14 14 H 1.48507 * 109.46831 * 60.00356 * 13 11 9 15 15 H 1.48497 * 109.47079 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47484 * 300.00539 * 13 11 9 17 17 C 1.46494 * 120.00444 * 185.53124 * 8 6 4 18 18 C 1.54273 * 110.03553 * 238.18755 * 17 8 6 19 19 C 1.54961 * 104.15895 * 217.13209 * 18 17 8 20 20 C 1.54894 * 102.77859 * 37.88921 * 19 18 17 21 21 C 1.53871 * 110.03467 * 120.96645 * 17 8 6 22 22 C 1.53003 * 117.49972 * 145.70400 * 2 1 3 23 23 H 1.08997 * 117.49705 * 0.02562 * 22 2 1 24 24 C 1.52991 * 117.50095 * 214.97947 * 22 2 1 25 25 C 1.52993 * 117.50123 * 179.97438 * 24 22 2 26 26 C 1.52996 * 60.00395 * 252.50979 * 25 24 22 27 27 H 1.09006 * 109.47175 * 154.27942 * 1 2 3 28 28 H 1.09001 * 109.47208 * 274.27871 * 1 2 3 29 29 H 1.08999 * 109.47450 * 34.28127 * 1 2 3 30 30 H 0.97003 * 120.00087 * 175.36994 * 12 11 9 31 31 H 1.08999 * 110.01726 * 359.57517 * 17 8 6 32 32 H 1.08993 * 110.48481 * 335.78087 * 18 17 8 33 33 H 1.09000 * 110.48352 * 98.42804 * 18 17 8 34 34 H 1.08994 * 110.72593 * 279.57278 * 19 18 17 35 35 H 1.08997 * 110.92143 * 156.29137 * 19 18 17 36 36 H 1.08995 * 110.48837 * 203.40026 * 20 19 18 37 37 H 1.09000 * 110.59754 * 80.81465 * 20 19 18 38 38 H 1.09004 * 110.03701 * 238.57137 * 21 17 8 39 39 H 1.08999 * 110.03399 * 0.02562 * 21 17 8 40 40 H 1.09002 * 115.54988 * 325.71091 * 24 22 2 41 41 H 1.08998 * 117.50029 * 0.02562 * 25 24 22 42 42 H 1.09007 * 117.50128 * 145.01776 * 25 24 22 43 43 H 1.08999 * 117.50439 * 252.50990 * 26 25 24 44 44 H 1.09006 * 117.49336 * 107.48302 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7653 5 1 3.1713 -0.8746 -1.2688 6 6 1.3721 -2.1405 -1.4610 7 8 0.6089 -2.8291 -0.8172 8 7 1.4469 -2.2872 -2.7987 9 6 2.3914 -1.5957 -3.5124 10 1 3.0474 -2.1210 -4.1907 11 6 2.5047 -0.2189 -3.3630 12 7 1.4955 0.4757 -2.8874 13 14 4.0915 0.6447 -3.8381 14 1 4.3668 0.4164 -5.2795 15 1 3.9573 2.1017 -3.5840 16 1 5.2119 0.1026 -3.0282 17 6 0.5230 -3.1903 -3.4894 18 6 1.3140 -4.2676 -4.2599 19 6 0.5010 -4.4757 -5.5625 20 6 0.0304 -3.0405 -5.9057 21 6 -0.2931 -2.4106 -4.5351 22 6 2.2365 -1.1212 0.7647 23 1 1.6112 -1.8590 1.2674 24 6 3.5489 -0.7764 1.4712 25 6 4.2551 -1.8973 2.2364 26 6 3.5488 -0.7762 3.0013 27 1 -0.3634 -0.9259 -0.4460 28 1 -0.3634 0.0767 1.0248 29 1 -0.3634 0.8491 -0.5788 30 1 1.5968 1.4258 -2.7199 31 1 -0.1459 -3.6618 -2.7695 32 1 2.3183 -3.9119 -4.4899 33 1 1.3582 -5.1926 -3.6849 34 1 -0.3525 -5.1297 -5.3841 35 1 1.1326 -4.8752 -6.3559 36 1 -0.8613 -3.0708 -6.5317 37 1 0.8256 -2.4848 -6.4028 38 1 -1.3583 -2.5043 -4.3233 39 1 -0.0016 -1.3603 -4.5291 40 1 4.1739 -0.0385 0.9682 41 1 3.7848 -2.8807 2.2361 42 1 5.3451 -1.8976 2.2365 43 1 4.1741 -0.0388 3.5046 44 1 2.6136 -1.0219 3.5044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528619968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:09 Heat of formation + Delta-G solvation = 3.158072 kcal Electronic energy + Delta-G solvation = -23083.187950 eV Core-core repulsion = 20001.539647 eV Total energy + Delta-G solvation = -3081.648303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.34666 -37.82145 -36.45335 -34.53315 -34.03278 -31.27023 -27.92590 -27.88241 -27.04885 -24.81022 -23.50833 -22.05848 -21.12476 -20.08405 -19.45965 -19.17114 -18.62900 -16.28188 -15.81580 -15.25252 -15.18334 -14.60783 -14.44185 -14.02095 -13.63475 -13.46675 -12.66588 -12.57935 -12.45581 -12.02072 -11.62665 -11.55087 -11.34800 -11.27405 -11.00402 -10.85514 -10.74992 -10.61369 -10.50599 -10.46983 -10.39780 -10.38562 -10.29947 -10.17091 -9.86219 -9.60582 -9.05955 -8.82437 -8.47799 -8.19084 -7.23390 -6.30489 -4.10150 3.14654 3.22317 3.24737 3.85124 4.08783 4.20387 4.70651 4.84583 5.00910 5.16891 5.27313 5.37706 5.41052 5.53432 5.59881 5.77891 5.85986 5.89671 6.04330 6.05482 6.15635 6.17316 6.22912 6.27438 6.28492 6.35392 6.39821 6.44332 6.53408 6.57496 6.59310 6.68804 6.70565 6.79246 6.82691 6.97591 6.98899 7.09672 7.19171 7.30675 7.38168 7.51714 8.07823 8.71173 9.01369 9.69058 10.10351 10.71723 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.007070 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.420146 B = 3959.487588 C = 4642.706909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 H 0.089 0.911 4 C -0.112 4.112 5 H 0.114 0.886 6 C 0.543 3.457 7 O -0.612 6.612 8 N -0.441 5.441 9 C -0.347 4.347 10 H 0.079 0.921 11 C 0.062 3.938 12 N -0.837 5.837 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.135 3.865 18 C -0.128 4.128 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.130 4.130 23 H 0.105 0.895 24 C -0.110 4.110 25 C -0.180 4.180 26 C -0.182 4.182 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.268 0.732 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -1.404 1.882 2.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 H 0.108 0.892 4 C -0.133 4.133 5 H 0.132 0.868 6 C 0.334 3.666 7 O -0.499 6.499 8 N -0.160 5.160 9 C -0.475 4.475 10 H 0.096 0.904 11 C -0.147 4.147 12 N -0.471 5.471 13 Si 0.717 3.283 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.031 3.969 18 C -0.167 4.167 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.163 4.163 22 C -0.148 4.148 23 H 0.123 0.877 24 C -0.129 4.129 25 C -0.217 4.217 26 C -0.219 4.219 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.344 -1.532 2.144 2.958 hybrid contribution 0.935 0.765 -0.440 1.286 sum 2.279 -0.767 1.703 2.947 Atomic orbital electron populations 1.21260 0.93104 1.03338 0.99290 1.21854 0.95137 0.92697 1.01140 0.89248 1.21976 1.01632 0.99219 0.90456 0.86836 1.19301 0.82566 0.82487 0.82259 1.90469 1.43748 1.49583 1.66105 1.43249 1.29677 1.39216 1.03836 1.18991 1.12048 0.88833 1.27590 0.90362 1.25407 0.96614 0.96636 0.96033 1.70026 1.28063 1.08030 1.40938 0.86593 0.83675 0.78507 0.79490 1.19860 1.20963 1.19748 1.21544 0.91338 0.90449 0.93592 1.22662 1.00410 0.98105 0.95512 1.22433 0.99059 0.97016 0.97396 1.22261 0.99916 0.95646 0.97570 1.22379 0.97797 1.02613 0.93511 1.22011 0.96287 1.02631 0.93920 0.87712 1.21704 0.97612 1.00927 0.92621 1.22891 0.98896 0.94785 1.05139 1.22890 1.02418 1.01866 0.94686 0.91074 0.94417 0.92685 0.92186 0.90629 0.90531 0.92918 0.92422 0.92530 0.93152 0.91728 0.93636 0.88970 0.88296 0.88834 0.89305 0.89386 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 10.00 37.16 0.37 -1.98 16 2 C -0.09 -1.84 5.06 -90.62 -0.46 -2.30 16 3 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 4 C -0.11 -2.54 3.58 -91.77 -0.33 -2.86 16 5 H 0.11 2.67 5.98 -51.93 -0.31 2.36 16 6 C 0.54 13.62 5.91 -10.99 -0.06 13.56 16 7 O -0.61 -16.39 14.18 5.55 0.08 -16.32 16 8 N -0.44 -10.71 2.36 -106.55 -0.25 -10.96 16 9 C -0.35 -8.40 7.17 -14.93 -0.11 -8.51 16 10 H 0.08 1.89 6.74 -52.49 -0.35 1.54 16 11 C 0.06 1.48 3.22 -17.47 -0.06 1.42 16 12 N -0.84 -20.48 11.13 55.50 0.62 -19.86 16 13 Si 0.89 18.79 29.30 -169.99 -4.98 13.81 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 C 0.13 2.96 3.29 -66.81 -0.22 2.74 16 18 C -0.13 -2.43 6.42 -25.03 -0.16 -2.59 16 19 C -0.12 -1.93 6.91 -24.70 -0.17 -2.10 16 20 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 21 C -0.12 -2.54 6.27 -25.61 -0.16 -2.71 16 22 C -0.13 -2.56 5.08 -90.62 -0.46 -3.02 16 23 H 0.10 2.21 7.69 -51.93 -0.40 1.82 16 24 C -0.11 -1.83 5.85 -90.63 -0.53 -2.36 16 25 C -0.18 -2.63 10.25 -26.74 -0.27 -2.90 16 26 C -0.18 -2.52 10.25 -26.73 -0.27 -2.79 16 27 H 0.07 1.70 5.39 -51.93 -0.28 1.42 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.27 6.35 8.32 -40.82 -0.34 6.01 16 31 H 0.08 1.77 6.96 -51.93 -0.36 1.41 16 32 H 0.08 1.53 6.37 -51.93 -0.33 1.19 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 2.18 7.34 -51.93 -0.38 1.80 16 40 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -26.06 343.16 -9.90 -35.96 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.47 Total: 10.75 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.07 Total: -18.56 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.37 Total: -30.82 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.08 Total: -16.32 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.98 Total: 13.81 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.06 -9.90 -35.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528619968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.123 kcal (2) G-P(sol) polarization free energy of solvation -26.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds