Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 115.54798 * 2 1 4 4 C 1.52996 * 117.49744 * 214.32922 * 2 1 3 5 5 H 1.09001 * 117.49671 * 145.00297 * 4 2 1 6 6 C 1.50693 * 117.50323 * 359.97438 * 4 2 1 7 7 O 1.21290 * 120.00370 * 298.88563 * 6 4 2 8 8 N 1.34776 * 120.00116 * 118.87729 * 6 4 2 9 9 C 1.37100 * 119.99890 * 5.81153 * 8 6 4 10 10 H 1.08001 * 120.00610 * 127.83371 * 9 8 6 11 11 C 1.38951 * 120.00035 * 307.83461 * 9 8 6 12 12 N 1.31414 * 119.99769 * 339.13454 * 11 9 8 13 13 Si 1.86801 * 120.00195 * 159.12981 * 11 9 8 14 14 H 1.48507 * 109.46831 * 60.00356 * 13 11 9 15 15 H 1.48497 * 109.47079 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47484 * 300.00539 * 13 11 9 17 17 C 1.46494 * 120.00444 * 185.53124 * 8 6 4 18 18 C 1.54273 * 110.03553 * 238.18755 * 17 8 6 19 19 C 1.54961 * 104.15895 * 217.13209 * 18 17 8 20 20 C 1.54894 * 102.77859 * 37.88921 * 19 18 17 21 21 C 1.53871 * 110.03467 * 120.96645 * 17 8 6 22 22 C 1.53003 * 117.49972 * 145.70400 * 2 1 3 23 23 H 1.08997 * 117.49705 * 0.02562 * 22 2 1 24 24 C 1.52991 * 117.50095 * 214.97947 * 22 2 1 25 25 C 1.52993 * 117.50123 * 179.97438 * 24 22 2 26 26 C 1.52996 * 60.00395 * 252.50979 * 25 24 22 27 27 H 1.09006 * 109.47175 * 154.27942 * 1 2 3 28 28 H 1.09001 * 109.47208 * 274.27871 * 1 2 3 29 29 H 1.08999 * 109.47450 * 34.28127 * 1 2 3 30 30 H 0.97003 * 120.00087 * 175.36994 * 12 11 9 31 31 H 1.08999 * 110.01726 * 359.57517 * 17 8 6 32 32 H 1.08993 * 110.48481 * 335.78087 * 18 17 8 33 33 H 1.09000 * 110.48352 * 98.42804 * 18 17 8 34 34 H 1.08994 * 110.72593 * 279.57278 * 19 18 17 35 35 H 1.08997 * 110.92143 * 156.29137 * 19 18 17 36 36 H 1.08995 * 110.48837 * 203.40026 * 20 19 18 37 37 H 1.09000 * 110.59754 * 80.81465 * 20 19 18 38 38 H 1.09004 * 110.03701 * 238.57137 * 21 17 8 39 39 H 1.08999 * 110.03399 * 0.02562 * 21 17 8 40 40 H 1.09002 * 115.54988 * 325.71091 * 24 22 2 41 41 H 1.08998 * 117.50029 * 0.02562 * 25 24 22 42 42 H 1.09007 * 117.50128 * 145.01776 * 25 24 22 43 43 H 1.08999 * 117.50439 * 252.50990 * 26 25 24 44 44 H 1.09006 * 117.49336 * 107.48302 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7653 5 1 3.1713 -0.8746 -1.2688 6 6 1.3721 -2.1405 -1.4610 7 8 0.6089 -2.8291 -0.8172 8 7 1.4469 -2.2872 -2.7987 9 6 2.3914 -1.5957 -3.5124 10 1 3.0474 -2.1210 -4.1907 11 6 2.5047 -0.2189 -3.3630 12 7 1.4955 0.4757 -2.8874 13 14 4.0915 0.6447 -3.8381 14 1 4.3668 0.4164 -5.2795 15 1 3.9573 2.1017 -3.5840 16 1 5.2119 0.1026 -3.0282 17 6 0.5230 -3.1903 -3.4894 18 6 1.3140 -4.2676 -4.2599 19 6 0.5010 -4.4757 -5.5625 20 6 0.0304 -3.0405 -5.9057 21 6 -0.2931 -2.4106 -4.5351 22 6 2.2365 -1.1212 0.7647 23 1 1.6112 -1.8590 1.2674 24 6 3.5489 -0.7764 1.4712 25 6 4.2551 -1.8973 2.2364 26 6 3.5488 -0.7762 3.0013 27 1 -0.3634 -0.9259 -0.4460 28 1 -0.3634 0.0767 1.0248 29 1 -0.3634 0.8491 -0.5788 30 1 1.5968 1.4258 -2.7199 31 1 -0.1459 -3.6618 -2.7695 32 1 2.3183 -3.9119 -4.4899 33 1 1.3582 -5.1926 -3.6849 34 1 -0.3525 -5.1297 -5.3841 35 1 1.1326 -4.8752 -6.3559 36 1 -0.8613 -3.0708 -6.5317 37 1 0.8256 -2.4848 -6.4028 38 1 -1.3583 -2.5043 -4.3233 39 1 -0.0016 -1.3603 -4.5291 40 1 4.1739 -0.0385 0.9682 41 1 3.7848 -2.8807 2.2361 42 1 5.3451 -1.8976 2.2365 43 1 4.1741 -0.0388 3.5046 44 1 2.6136 -1.0219 3.5044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528619968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = -7.348475 kcal Electronic energy + Delta-G solvation = -23083.643548 eV Core-core repulsion = 20001.539647 eV Total energy + Delta-G solvation = -3082.103901 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12795 -39.35801 -37.99626 -36.13945 -35.80790 -33.12028 -29.58891 -29.45341 -28.68067 -26.68521 -25.10833 -23.17784 -22.70570 -21.56038 -20.97872 -20.90858 -20.36950 -18.13015 -17.51892 -17.07656 -16.56873 -16.14436 -16.01935 -15.76005 -15.26557 -14.99996 -14.28096 -14.21485 -14.01661 -13.70043 -13.38589 -13.29148 -13.02850 -12.73862 -12.51933 -12.44486 -12.35767 -12.23126 -12.10849 -12.00373 -11.90431 -11.85274 -11.83112 -11.44800 -11.33848 -11.31483 -10.77265 -10.54666 -10.14089 -10.00348 -9.11290 -8.15851 -6.01558 1.45358 1.50188 1.55315 2.07256 2.36111 2.71441 3.04630 3.11875 3.45809 3.75259 3.87551 3.93870 3.99295 4.10099 4.18349 4.31235 4.38880 4.42308 4.52587 4.59652 4.61714 4.66828 4.78309 4.80764 4.81553 4.89985 4.91971 5.02152 5.03074 5.07060 5.09840 5.17201 5.24274 5.27448 5.28892 5.31195 5.42764 5.49924 5.54376 5.56641 5.61228 5.67425 6.21549 6.80623 7.13255 7.78057 8.21303 8.86232 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.007070 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.420146 B = 3959.487588 C = 4642.706909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.085 4.085 3 H 0.100 0.900 4 C -0.131 4.131 5 H 0.102 0.898 6 C 0.526 3.474 7 O -0.642 6.642 8 N -0.445 5.445 9 C -0.361 4.361 10 H 0.077 0.923 11 C 0.038 3.962 12 N -0.855 5.855 13 Si 0.947 3.053 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.122 3.878 18 C -0.124 4.124 19 C -0.108 4.108 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.106 4.106 23 H 0.087 0.913 24 C -0.136 4.136 25 C -0.177 4.177 26 C -0.158 4.158 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.268 0.732 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -1.163 1.820 3.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 H 0.118 0.882 4 C -0.152 4.152 5 H 0.120 0.880 6 C 0.318 3.682 7 O -0.532 6.532 8 N -0.163 5.163 9 C -0.489 4.489 10 H 0.094 0.906 11 C -0.170 4.170 12 N -0.488 5.488 13 Si 0.771 3.229 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.194 1.194 17 C 0.019 3.981 18 C -0.162 4.162 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.158 4.158 22 C -0.125 4.125 23 H 0.105 0.895 24 C -0.154 4.154 25 C -0.214 4.214 26 C -0.195 4.195 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.543 -1.298 2.058 3.519 hybrid contribution 0.501 0.673 -0.412 0.934 sum 3.044 -0.625 1.646 3.516 Atomic orbital electron populations 1.21145 0.93474 1.01214 1.00285 1.21895 0.94862 0.92961 1.00704 0.88175 1.21842 1.01051 1.00073 0.92219 0.87970 1.19804 0.82818 0.82929 0.82653 1.90423 1.45207 1.50903 1.66687 1.43436 1.29760 1.39196 1.03898 1.19096 1.12516 0.89308 1.27981 0.90568 1.25926 0.98652 0.96745 0.95653 1.70112 1.29309 1.08123 1.41279 0.85735 0.80592 0.77397 0.79157 1.19621 1.20833 1.19422 1.21760 0.91546 0.91233 0.93605 1.22598 0.99733 0.96981 0.96897 1.22405 0.99520 0.96536 0.96136 1.22212 1.00933 0.95910 0.95536 1.22272 0.97647 1.00405 0.95463 1.21951 0.97474 1.01087 0.92012 0.89464 1.21658 0.96456 1.02816 0.94518 1.22978 1.00056 0.94116 1.04201 1.22989 1.02661 1.01491 0.92324 0.94607 0.92092 0.92921 0.92170 0.93023 0.91776 0.92451 0.90645 0.89923 0.90397 0.92438 0.93248 0.92602 0.87911 0.89791 0.87221 0.86716 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.41 10.00 71.98 0.72 -3.69 16 2 C -0.09 -3.54 5.06 -10.79 -0.05 -3.60 16 3 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 4 C -0.13 -6.08 3.58 -11.54 -0.04 -6.12 16 5 H 0.10 4.91 5.98 -2.39 -0.01 4.90 16 6 C 0.53 27.56 5.91 87.65 0.52 28.08 16 7 O -0.64 -36.22 14.18 -3.06 -0.04 -36.26 16 8 N -0.45 -22.46 2.36 -609.39 -1.44 -23.90 16 9 C -0.36 -17.93 7.17 84.04 0.60 -17.33 16 10 H 0.08 3.75 6.74 -2.91 -0.02 3.73 16 11 C 0.04 1.83 3.22 84.93 0.27 2.10 16 12 N -0.85 -42.55 11.13 21.66 0.24 -42.31 16 13 Si 0.95 38.40 29.30 68.60 2.01 40.41 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 15 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 17 C 0.12 5.54 3.29 45.72 0.15 5.69 16 18 C -0.12 -4.65 6.42 31.70 0.20 -4.45 16 19 C -0.11 -3.20 6.91 31.91 0.22 -2.98 16 20 C -0.11 -3.54 6.83 31.67 0.22 -3.32 16 21 C -0.12 -4.97 6.27 31.32 0.20 -4.77 16 22 C -0.11 -4.22 5.08 -10.79 -0.05 -4.28 16 23 H 0.09 3.77 7.69 -2.39 -0.02 3.75 16 24 C -0.14 -4.32 5.85 -10.80 -0.06 -4.38 16 25 C -0.18 -4.80 10.25 30.59 0.31 -4.49 16 26 C -0.16 -3.93 10.25 30.59 0.31 -3.61 16 27 H 0.03 1.77 5.39 -2.38 -0.01 1.76 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.27 12.83 8.32 -92.71 -0.77 12.05 16 31 H 0.05 2.54 6.96 -2.39 -0.02 2.52 16 32 H 0.06 2.56 6.37 -2.39 -0.02 2.55 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 2.73 7.34 -2.39 -0.02 2.71 16 40 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 43 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -58.34 343.16 5.25 -53.10 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.96 Total: 36.11 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.51 Total: -27.15 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -1.20 Total: -66.21 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.04 Total: -36.26 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.01 Total: 40.41 kcal Total: -58.34 5.25 -53.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528619968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.751 kcal (2) G-P(sol) polarization free energy of solvation -58.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds