Wall clock time and date at job start Mon Mar 30 2020 02:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 115.55899 * 2 1 4 4 C 1.53069 * 117.51660 * 214.29258 * 2 1 3 5 5 H 1.09008 * 117.49334 * 145.03821 * 4 2 1 6 6 C 1.50692 * 117.53537 * 359.97438 * 4 2 1 7 7 O 1.21282 * 119.99963 * 291.38458 * 6 4 2 8 8 N 1.34778 * 120.00351 * 111.38291 * 6 4 2 9 9 C 1.46923 * 120.62800 * 359.72202 * 8 6 4 10 10 C 1.53624 * 108.54412 * 126.37097 * 9 8 6 11 11 C 1.53034 * 109.24374 * 54.85577 * 10 9 8 12 12 C 1.50693 * 109.45256 * 178.50103 * 11 10 9 13 13 H 1.08004 * 120.00452 * 120.06223 * 12 11 10 14 14 C 1.37886 * 119.99892 * 300.05864 * 12 11 10 15 15 N 1.31513 * 119.99782 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00020 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47002 * 90.00525 * 16 14 12 18 18 H 1.48498 * 109.47177 * 210.00089 * 16 14 12 19 19 H 1.48502 * 109.47405 * 330.00671 * 16 14 12 20 20 C 1.53047 * 109.53879 * 298.51716 * 11 10 9 21 21 C 1.46918 * 120.63324 * 180.02562 * 8 6 4 22 22 C 1.53000 * 59.98584 * 252.52266 * 4 2 1 23 23 H 1.09002 * 117.49833 * 107.50105 * 22 4 2 24 24 C 1.52996 * 117.50107 * 252.50051 * 22 4 2 25 25 C 1.52999 * 117.49731 * 248.53456 * 24 22 4 26 26 C 1.52997 * 60.00150 * 252.50837 * 25 24 22 27 27 H 1.08997 * 109.47537 * 274.31196 * 1 2 3 28 28 H 1.09001 * 109.46849 * 34.31956 * 1 2 3 29 29 H 1.09005 * 109.46784 * 154.31415 * 1 2 3 30 30 H 1.09003 * 109.58927 * 246.20573 * 9 8 6 31 31 H 1.09002 * 109.58653 * 6.62582 * 9 8 6 32 32 H 1.09002 * 109.62935 * 294.86535 * 10 9 8 33 33 H 1.09001 * 109.43325 * 174.72345 * 10 9 8 34 34 H 1.08999 * 109.46202 * 58.52979 * 11 10 9 35 35 H 0.97001 * 120.00041 * 180.02562 * 15 14 12 36 36 H 1.09006 * 109.49038 * 301.41210 * 20 11 10 37 37 H 1.08994 * 109.52714 * 181.33396 * 20 11 10 38 38 H 1.08998 * 109.58912 * 353.37111 * 21 8 6 39 39 H 1.08996 * 109.59401 * 113.65338 * 21 8 6 40 40 H 1.09001 * 115.55023 * 34.24049 * 24 22 4 41 41 H 1.08996 * 117.50278 * 359.97438 * 25 24 22 42 42 H 1.09004 * 117.50245 * 145.01983 * 25 24 22 43 43 H 1.09001 * 117.50189 * 252.51211 * 26 25 24 44 44 H 1.08994 * 117.51763 * 107.47890 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 -0.7649 5 1 3.1725 -0.8756 -1.2678 6 6 1.3740 -2.1424 -1.4603 7 8 0.7131 -2.9228 -0.8083 8 7 1.3363 -2.1881 -2.8068 9 6 2.1265 -1.2454 -3.6102 10 6 2.9851 -2.0472 -4.6000 11 6 2.0802 -2.9680 -5.4218 12 6 2.9133 -3.7300 -6.4199 13 1 2.9356 -4.8095 -6.3926 14 6 3.6472 -3.0492 -7.3681 15 7 3.6205 -1.7347 -7.4011 16 14 4.6805 -3.9938 -8.6047 17 1 3.8636 -4.2892 -9.8092 18 1 5.8576 -3.1762 -8.9934 19 1 5.1416 -5.2669 -7.9949 20 6 1.3719 -3.9542 -4.4902 21 6 0.4991 -3.1772 -3.4991 22 6 2.2365 -1.1209 0.7651 23 1 1.6112 -1.8584 1.2685 24 6 3.5486 -0.7756 1.4721 25 6 4.2536 -1.8958 2.2396 26 6 3.5474 -0.7730 3.0021 27 1 -0.3634 0.0773 1.0247 28 1 -0.3633 0.8488 -0.5794 29 1 -0.3633 -0.9262 -0.4455 30 1 1.4574 -0.5812 -4.1572 31 1 2.7719 -0.6593 -2.9558 32 1 3.7124 -2.6464 -4.0521 33 1 3.5069 -1.3605 -5.2666 34 1 1.3375 -2.3701 -5.9500 35 1 4.1365 -1.2557 -8.0683 36 1 2.1145 -4.5353 -3.9434 37 1 0.7457 -4.6252 -5.0781 38 1 0.0703 -3.8663 -2.7715 39 1 -0.3013 -2.6675 -4.0352 40 1 4.1745 -0.0392 0.9680 41 1 3.7824 -2.8786 2.2413 42 1 5.3436 -1.8966 2.2406 43 1 4.1727 -0.0350 3.5046 44 1 2.6116 -1.0168 3.5050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529000060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:57 Heat of formation + Delta-G solvation = -2.739114 kcal Electronic energy + Delta-G solvation = -22056.036751 eV Core-core repulsion = 18974.132727 eV Total energy + Delta-G solvation = -3081.904024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.21155 -38.22025 -36.74423 -35.37414 -33.48718 -31.26757 -30.08053 -28.67726 -26.47867 -24.69901 -22.84862 -22.46810 -22.30674 -21.36722 -20.20870 -19.39688 -17.97595 -16.94209 -16.22204 -15.85524 -15.46486 -15.01140 -14.56082 -14.45435 -13.52775 -13.38765 -13.15786 -13.05490 -12.87521 -12.70667 -12.35097 -12.05994 -11.82027 -11.66451 -11.59917 -11.31002 -11.20983 -11.16440 -10.95757 -10.74634 -10.63525 -10.39121 -10.11467 -9.89611 -9.68262 -9.47475 -9.27283 -9.17400 -8.91222 -8.38703 -7.97339 -6.04243 -4.10299 2.78691 3.27404 3.34511 3.37107 3.38482 3.57336 4.11471 4.38178 4.40057 4.68388 4.73770 4.89892 5.10587 5.13282 5.19921 5.22308 5.25838 5.37271 5.52195 5.63910 5.74228 5.78748 5.79788 5.83113 5.91215 5.99899 6.01114 6.04113 6.11627 6.15211 6.22355 6.30107 6.37759 6.46274 6.66325 6.90103 7.03967 7.15567 7.27999 7.65669 7.91122 7.95829 8.03310 8.39351 8.60649 8.93101 9.54832 11.01217 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.004067 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.998354 B = 6883.096527 C = 7320.954500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.180 4.180 5 H 0.124 0.876 6 C 0.544 3.456 7 O -0.560 6.560 8 N -0.595 5.595 9 C 0.103 3.897 10 C -0.124 4.124 11 C 0.049 3.951 12 C -0.512 4.512 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.123 4.123 21 C 0.112 3.888 22 C -0.089 4.089 23 H 0.116 0.884 24 C -0.124 4.124 25 C -0.176 4.176 26 C -0.176 4.176 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.104 0.896 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 5.499 15.127 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.136 4.136 3 H 0.129 0.871 4 C -0.201 4.201 5 H 0.142 0.858 6 C 0.332 3.668 7 O -0.441 6.441 8 N -0.326 5.326 9 C -0.019 4.019 10 C -0.163 4.163 11 C 0.030 3.970 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.161 4.161 21 C -0.010 4.010 22 C -0.107 4.107 23 H 0.134 0.866 24 C -0.142 4.142 25 C -0.213 4.213 26 C -0.213 4.213 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.975 5.232 15.327 16.315 hybrid contribution 0.826 -0.409 -0.969 1.337 sum -1.149 4.823 14.358 15.190 Atomic orbital electron populations 1.21455 0.92450 1.02902 1.02002 1.22383 0.95604 0.93740 1.01897 0.87130 1.22497 1.01997 1.00693 0.94864 0.85777 1.19459 0.81524 0.83754 0.82035 1.90616 1.45539 1.42718 1.65198 1.48149 1.45191 1.34388 1.04884 1.22157 0.94273 0.91564 0.93892 1.22102 0.98086 0.99926 0.96136 1.18629 0.93996 0.92536 0.91814 1.21215 1.27234 0.93002 1.13562 0.92718 1.24956 0.96690 0.94877 0.97417 1.69836 1.41961 1.06106 1.35199 0.86617 0.79937 0.79943 0.81650 1.20716 1.21246 1.19977 1.22011 0.98343 0.98842 0.96917 1.21698 0.93030 0.91060 0.95260 1.21854 0.96726 1.00994 0.91132 0.86647 1.21721 0.97094 1.01983 0.93380 1.22949 0.99460 0.94685 1.04228 1.22922 1.02702 1.01936 0.93729 0.92033 0.92159 0.91425 0.91973 0.91273 0.94256 0.87808 0.95478 0.92991 0.92982 0.92176 0.90425 0.92261 0.87687 0.88579 0.88758 0.88856 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 10.03 37.16 0.37 -1.20 16 2 C -0.12 -1.39 6.13 -90.58 -0.56 -1.95 16 3 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 4 C -0.18 -2.55 4.84 -91.74 -0.44 -2.99 16 5 H 0.12 1.68 6.58 -51.92 -0.34 1.33 16 6 C 0.54 9.63 6.12 -10.99 -0.07 9.56 16 7 O -0.56 -11.26 14.73 5.56 0.08 -11.17 16 8 N -0.59 -10.85 2.97 -172.49 -0.51 -11.36 16 9 C 0.10 1.85 6.37 -3.49 -0.02 1.83 16 10 C -0.12 -2.73 5.17 -26.39 -0.14 -2.86 16 11 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 12 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 13 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.34 11.30 55.43 0.63 -23.71 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.12 -2.55 5.30 -26.59 -0.14 -2.69 16 21 C 0.11 2.08 6.43 -3.70 -0.02 2.05 16 22 C -0.09 -1.11 5.08 -90.62 -0.46 -1.57 16 23 H 0.12 1.63 7.67 -51.93 -0.40 1.23 16 24 C -0.12 -1.30 5.85 -90.62 -0.53 -1.83 16 25 C -0.18 -1.77 10.25 -26.73 -0.27 -2.04 16 26 C -0.18 -1.59 10.25 -26.73 -0.27 -1.86 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.00 5.71 -51.93 -0.30 0.70 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.08 5.51 -51.93 -0.29 0.79 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.10 2.53 6.03 -51.93 -0.31 2.22 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.44 7.01 -51.93 -0.36 1.08 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -28.53 346.14 -10.20 -38.73 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.46 Total: 3.47 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -3.13 Total: -16.97 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.12 Total: -35.07 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.53 -10.20 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529000060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.992 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds