Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 115.56486 * 2 1 4 4 C 1.53002 * 117.49615 * 214.31473 * 2 1 3 5 5 H 1.09007 * 117.49693 * 359.97438 * 4 2 1 6 6 C 1.50697 * 117.49985 * 145.02036 * 4 2 1 7 7 O 1.21281 * 120.00209 * 333.76567 * 6 4 2 8 8 N 1.34774 * 119.99844 * 153.76314 * 6 4 2 9 9 C 1.46503 * 119.99851 * 179.97438 * 8 6 4 10 10 H 1.09003 * 110.01721 * 325.70029 * 9 8 6 11 11 C 1.54266 * 110.03143 * 87.09592 * 9 8 6 12 12 C 1.55006 * 104.14062 * 95.68699 * 11 9 8 13 13 C 1.54889 * 102.75547 * 37.94734 * 12 11 9 14 14 H 1.08999 * 110.48559 * 80.72610 * 13 12 11 15 15 C 1.50699 * 110.60250 * 203.31455 * 13 12 11 16 16 H 1.08002 * 120.00123 * 114.84377 * 15 13 12 17 17 C 1.37884 * 119.99863 * 294.84347 * 15 13 12 18 18 N 1.31513 * 119.99755 * 179.97438 * 17 15 13 19 19 Si 1.86796 * 119.99940 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47142 * 89.99820 * 19 17 15 21 21 H 1.48497 * 109.47053 * 209.99987 * 19 17 15 22 22 H 1.48506 * 109.47231 * 330.00285 * 19 17 15 23 23 C 1.53871 * 110.03395 * 204.31296 * 9 8 6 24 24 C 1.52998 * 117.49469 * 145.69332 * 2 1 3 25 25 H 1.09000 * 117.50341 * 359.97378 * 24 2 1 26 26 C 1.53006 * 117.49429 * 214.97228 * 24 2 1 27 27 C 1.52999 * 117.49637 * 65.39319 * 26 24 2 28 28 C 1.53000 * 60.00084 * 107.48665 * 27 26 24 29 29 H 1.08998 * 109.46510 * 274.31017 * 1 2 3 30 30 H 1.08997 * 109.46475 * 34.30880 * 1 2 3 31 31 H 1.09001 * 109.47219 * 154.30934 * 1 2 3 32 32 H 0.97002 * 120.00177 * 0.02562 * 8 6 4 33 33 H 1.09003 * 110.48239 * 214.35634 * 11 9 8 34 34 H 1.08998 * 110.48391 * 336.99106 * 11 9 8 35 35 H 1.09004 * 110.76280 * 279.63184 * 12 11 9 36 36 H 1.08997 * 110.74859 * 156.26062 * 12 11 9 37 37 H 0.97000 * 119.99422 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.03114 * 359.97438 * 23 9 8 39 39 H 1.08995 * 110.03759 * 121.38427 * 23 9 8 40 40 H 1.08993 * 115.56472 * 279.70154 * 26 24 2 41 41 H 1.08997 * 117.49903 * 359.97438 * 27 26 24 42 42 H 1.08999 * 117.49958 * 214.97465 * 27 26 24 43 43 H 1.09000 * 117.50026 * 107.49194 * 28 27 26 44 44 H 1.09006 * 117.49734 * 252.48571 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1210 -0.7651 5 1 1.6111 -1.8587 -1.2681 6 6 3.5292 -0.7811 -1.4609 7 8 3.7437 0.3573 -1.8198 8 7 4.4471 -1.7424 -1.6845 9 6 5.7037 -1.4121 -2.3614 10 1 5.5327 -0.6360 -3.1075 11 6 6.7488 -0.9347 -1.3321 12 6 7.5717 -2.2081 -1.0095 13 6 7.6671 -2.9115 -2.3862 14 1 8.4553 -2.4623 -2.9903 15 6 7.9147 -4.3877 -2.2114 16 1 7.1678 -5.1016 -2.5261 17 6 9.0948 -4.8270 -1.6498 18 7 9.3107 -6.1153 -1.4968 19 14 10.3869 -3.5924 -1.1062 20 1 10.1442 -3.2123 0.3086 21 1 11.7360 -4.2004 -1.2310 22 1 10.3078 -2.3828 -1.9642 23 6 6.2872 -2.6682 -3.0318 24 6 2.2364 -1.1211 0.7649 25 1 1.6112 -1.8583 1.2685 26 6 3.5491 -0.7761 1.4713 27 6 3.4859 0.2165 2.6339 28 6 3.7285 -1.2690 2.9086 29 1 -0.3632 0.0772 1.0248 30 1 -0.3632 0.8489 -0.5793 31 1 -0.3634 -0.9261 -0.4455 32 1 4.2754 -2.6530 -1.3978 33 1 7.3886 -0.1665 -1.7664 34 1 6.2568 -0.5601 -0.4346 35 1 7.0457 -2.8362 -0.2905 36 1 8.5630 -1.9443 -0.6411 37 1 10.1408 -6.4242 -1.1013 38 1 5.6358 -3.5236 -2.8530 39 1 6.3996 -2.5017 -4.1031 40 1 4.4331 -0.7494 0.8343 41 1 2.5094 0.6240 2.8953 42 1 4.3285 0.8961 2.7618 43 1 4.7307 -1.5666 3.2172 44 1 2.9116 -1.8389 3.3513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529443693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -7.506307 kcal Electronic energy + Delta-G solvation = -22099.236837 eV Core-core repulsion = 19017.126092 eV Total energy + Delta-G solvation = -3082.110745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.26741 -38.34987 -37.07940 -35.49821 -33.57304 -32.06009 -29.18358 -28.48495 -27.63738 -24.68453 -23.48507 -22.56500 -22.15966 -20.23001 -19.89520 -19.62093 -18.93402 -17.00238 -16.95567 -15.99997 -15.51777 -15.05152 -14.88651 -14.34692 -14.13896 -13.63547 -13.59958 -13.22929 -12.92631 -12.75130 -12.52803 -12.35038 -11.93262 -11.62306 -11.45393 -11.32683 -11.26183 -11.06133 -10.94556 -10.70933 -10.56700 -10.21063 -10.02501 -9.95766 -9.77344 -9.67307 -9.46616 -9.40914 -9.03411 -8.67153 -8.55212 -6.09371 -4.08213 2.72464 3.27741 3.28980 3.37380 3.39243 3.49459 3.91726 4.34164 4.40942 4.61555 4.64183 4.90123 4.96988 5.11650 5.15008 5.15949 5.19757 5.35727 5.40170 5.42475 5.55214 5.56124 5.56743 5.62217 5.77821 5.85410 5.88380 6.05029 6.08037 6.13066 6.14002 6.22180 6.31758 6.42960 6.52366 6.54893 6.70119 6.84971 7.05841 7.09451 7.49325 7.75269 7.83045 8.48264 8.49924 8.93754 9.53975 11.03789 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.004599 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.893094 B = 6086.221235 C = 6576.383141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 H 0.114 0.886 4 C -0.180 4.180 5 H 0.127 0.873 6 C 0.542 3.458 7 O -0.547 6.547 8 N -0.711 5.711 9 C 0.139 3.861 10 H 0.079 0.921 11 C -0.131 4.131 12 C -0.127 4.127 13 C 0.011 3.989 14 H 0.033 0.967 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.264 1.264 23 C -0.112 4.112 24 C -0.096 4.096 25 H 0.113 0.887 26 C -0.131 4.131 27 C -0.174 4.174 28 C -0.173 4.173 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.403 0.597 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.180 10.509 5.850 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.135 4.135 3 H 0.132 0.868 4 C -0.201 4.201 5 H 0.144 0.856 6 C 0.328 3.672 7 O -0.425 6.425 8 N -0.361 5.361 9 C 0.035 3.965 10 H 0.097 0.903 11 C -0.170 4.170 12 C -0.165 4.165 13 C -0.008 4.008 14 H 0.051 0.949 15 C -0.548 4.548 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.541 5.541 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.189 1.189 23 C -0.150 4.150 24 C -0.114 4.114 25 H 0.131 0.869 26 C -0.149 4.149 27 C -0.211 4.211 28 C -0.210 4.210 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.238 0.762 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.880 11.180 5.629 19.445 hybrid contribution 0.804 -0.027 0.473 0.933 sum -14.076 11.153 6.102 18.967 Atomic orbital electron populations 1.21381 0.92390 1.02230 1.01889 1.22410 0.94915 0.95032 1.01160 0.86808 1.22545 0.98139 1.04536 0.94858 0.85554 1.19566 0.83981 0.85108 0.78557 1.90668 1.79107 1.20685 1.52013 1.46267 1.18024 1.12120 1.59694 1.21742 0.82383 0.98350 0.93992 0.90294 1.22788 0.97440 0.98537 0.98242 1.22940 0.97850 0.94883 1.00783 1.19977 0.92546 0.96712 0.91534 0.94854 1.21048 1.03460 0.89643 1.40599 0.90883 1.24989 0.97935 0.94870 0.95226 1.69903 1.25835 1.13426 1.44908 0.86908 0.80847 0.81907 0.79477 1.20440 1.22159 1.18917 1.22421 0.98858 0.94982 0.98751 1.21934 0.97329 1.01499 0.90672 0.86915 1.21806 0.97436 1.04834 0.90856 1.22914 1.02944 0.92629 1.02621 1.22978 1.03074 0.96919 0.98001 0.91964 0.91893 0.92398 0.76248 0.91810 0.92675 0.91505 0.93647 0.92708 0.91240 0.92270 0.87329 0.88771 0.88945 0.88608 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.19 37.16 0.38 -0.59 16 2 C -0.12 -1.23 5.63 -90.62 -0.51 -1.74 16 3 H 0.11 1.41 7.91 -51.93 -0.41 1.00 16 4 C -0.18 -2.07 5.82 -91.77 -0.53 -2.61 16 5 H 0.13 1.22 8.05 -51.93 -0.42 0.80 16 6 C 0.54 8.16 5.85 -10.99 -0.06 8.09 16 7 O -0.55 -10.15 16.25 5.56 0.09 -10.06 16 8 N -0.71 -10.60 5.02 -52.72 -0.26 -10.86 16 9 C 0.14 2.37 3.23 -66.81 -0.22 2.15 16 10 H 0.08 1.38 7.59 -51.93 -0.39 0.98 16 11 C -0.13 -2.34 6.54 -25.01 -0.16 -2.50 16 12 C -0.13 -2.62 5.31 -24.68 -0.13 -2.75 16 13 C 0.01 0.25 2.27 -90.11 -0.20 0.05 16 14 H 0.03 0.78 7.06 -51.93 -0.37 0.41 16 15 C -0.51 -13.73 9.05 -34.44 -0.31 -14.04 16 16 H 0.07 2.12 7.79 -52.49 -0.41 1.71 16 17 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 18 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 19 Si 0.88 21.53 24.65 -169.99 -4.19 17.33 16 20 H -0.28 -6.67 7.10 56.52 0.40 -6.27 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.26 -6.22 6.47 56.52 0.37 -5.85 16 23 C -0.11 -2.09 6.13 -25.61 -0.16 -2.25 16 24 C -0.10 -0.99 5.57 -90.62 -0.50 -1.50 16 25 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 26 C -0.13 -1.54 5.50 -90.62 -0.50 -2.04 16 27 C -0.17 -1.80 10.24 -26.73 -0.27 -2.08 16 28 C -0.17 -1.79 10.25 -26.73 -0.27 -2.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 32 H 0.40 5.48 8.31 -40.82 -0.34 5.14 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.95 7.40 -51.93 -0.38 0.57 16 35 H 0.07 1.41 8.05 -51.93 -0.42 0.99 16 36 H 0.04 0.97 5.28 -51.93 -0.27 0.69 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.29 7.13 -51.93 -0.37 0.92 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.11 1.55 6.25 -51.93 -0.32 1.22 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -30.70 347.91 -9.41 -40.10 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.49 Total: 6.54 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -3.56 Total: -21.95 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.51 Total: -37.21 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.19 Total: 17.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.70 -9.41 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529443693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.598 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds