Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 115.56486 * 2 1 4 4 C 1.53002 * 117.49615 * 214.31473 * 2 1 3 5 5 H 1.09007 * 117.49693 * 359.97438 * 4 2 1 6 6 C 1.50697 * 117.49985 * 145.02036 * 4 2 1 7 7 O 1.21281 * 120.00209 * 333.76567 * 6 4 2 8 8 N 1.34774 * 119.99844 * 153.76314 * 6 4 2 9 9 C 1.46503 * 119.99851 * 179.97438 * 8 6 4 10 10 H 1.09003 * 110.01721 * 325.70029 * 9 8 6 11 11 C 1.54266 * 110.03143 * 87.09592 * 9 8 6 12 12 C 1.55006 * 104.14062 * 95.68699 * 11 9 8 13 13 C 1.54889 * 102.75547 * 37.94734 * 12 11 9 14 14 H 1.08999 * 110.48559 * 80.72610 * 13 12 11 15 15 C 1.50699 * 110.60250 * 203.31455 * 13 12 11 16 16 H 1.08002 * 120.00123 * 114.84377 * 15 13 12 17 17 C 1.37884 * 119.99863 * 294.84347 * 15 13 12 18 18 N 1.31513 * 119.99755 * 179.97438 * 17 15 13 19 19 Si 1.86796 * 119.99940 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47142 * 89.99820 * 19 17 15 21 21 H 1.48497 * 109.47053 * 209.99987 * 19 17 15 22 22 H 1.48506 * 109.47231 * 330.00285 * 19 17 15 23 23 C 1.53871 * 110.03395 * 204.31296 * 9 8 6 24 24 C 1.52998 * 117.49469 * 145.69332 * 2 1 3 25 25 H 1.09000 * 117.50341 * 359.97378 * 24 2 1 26 26 C 1.53006 * 117.49429 * 214.97228 * 24 2 1 27 27 C 1.52999 * 117.49637 * 65.39319 * 26 24 2 28 28 C 1.53000 * 60.00084 * 107.48665 * 27 26 24 29 29 H 1.08998 * 109.46510 * 274.31017 * 1 2 3 30 30 H 1.08997 * 109.46475 * 34.30880 * 1 2 3 31 31 H 1.09001 * 109.47219 * 154.30934 * 1 2 3 32 32 H 0.97002 * 120.00177 * 0.02562 * 8 6 4 33 33 H 1.09003 * 110.48239 * 214.35634 * 11 9 8 34 34 H 1.08998 * 110.48391 * 336.99106 * 11 9 8 35 35 H 1.09004 * 110.76280 * 279.63184 * 12 11 9 36 36 H 1.08997 * 110.74859 * 156.26062 * 12 11 9 37 37 H 0.97000 * 119.99422 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.03114 * 359.97438 * 23 9 8 39 39 H 1.08995 * 110.03759 * 121.38427 * 23 9 8 40 40 H 1.08993 * 115.56472 * 279.70154 * 26 24 2 41 41 H 1.08997 * 117.49903 * 359.97438 * 27 26 24 42 42 H 1.08999 * 117.49958 * 214.97465 * 27 26 24 43 43 H 1.09000 * 117.50026 * 107.49194 * 28 27 26 44 44 H 1.09006 * 117.49734 * 252.48571 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1210 -0.7651 5 1 1.6111 -1.8587 -1.2681 6 6 3.5292 -0.7811 -1.4609 7 8 3.7437 0.3573 -1.8198 8 7 4.4471 -1.7424 -1.6845 9 6 5.7037 -1.4121 -2.3614 10 1 5.5327 -0.6360 -3.1075 11 6 6.7488 -0.9347 -1.3321 12 6 7.5717 -2.2081 -1.0095 13 6 7.6671 -2.9115 -2.3862 14 1 8.4553 -2.4623 -2.9903 15 6 7.9147 -4.3877 -2.2114 16 1 7.1678 -5.1016 -2.5261 17 6 9.0948 -4.8270 -1.6498 18 7 9.3107 -6.1153 -1.4968 19 14 10.3869 -3.5924 -1.1062 20 1 10.1442 -3.2123 0.3086 21 1 11.7360 -4.2004 -1.2310 22 1 10.3078 -2.3828 -1.9642 23 6 6.2872 -2.6682 -3.0318 24 6 2.2364 -1.1211 0.7649 25 1 1.6112 -1.8583 1.2685 26 6 3.5491 -0.7761 1.4713 27 6 3.4859 0.2165 2.6339 28 6 3.7285 -1.2690 2.9086 29 1 -0.3632 0.0772 1.0248 30 1 -0.3632 0.8489 -0.5793 31 1 -0.3634 -0.9261 -0.4455 32 1 4.2754 -2.6530 -1.3978 33 1 7.3886 -0.1665 -1.7664 34 1 6.2568 -0.5601 -0.4346 35 1 7.0457 -2.8362 -0.2905 36 1 8.5630 -1.9443 -0.6411 37 1 10.1408 -6.4242 -1.1013 38 1 5.6358 -3.5236 -2.8530 39 1 6.3996 -2.5017 -4.1031 40 1 4.4331 -0.7494 0.8343 41 1 2.5094 0.6240 2.8953 42 1 4.3285 0.8961 2.7618 43 1 4.7307 -1.5666 3.2172 44 1 2.9116 -1.8389 3.3513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529443693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -25.146774 kcal Electronic energy + Delta-G solvation = -22100.001785 eV Core-core repulsion = 19017.126092 eV Total energy + Delta-G solvation = -3082.875693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39101 -39.54671 -38.39951 -36.37223 -35.20350 -33.93319 -30.41825 -29.86237 -29.01568 -25.98585 -25.04139 -23.43308 -23.11673 -21.46156 -21.04826 -20.94135 -20.34182 -18.95420 -18.04869 -17.19526 -16.83593 -16.61900 -16.09890 -15.76582 -15.26763 -14.83962 -14.75431 -14.56854 -14.25720 -14.05985 -13.87001 -13.58399 -13.15607 -12.94215 -12.76142 -12.57564 -12.40322 -12.37196 -12.12341 -11.89719 -11.85315 -11.66216 -11.54681 -11.52169 -11.32128 -11.04796 -10.86321 -10.78717 -10.68600 -10.33021 -9.98962 -8.27751 -6.29807 1.32588 1.36561 1.45931 1.58897 2.19912 2.34812 2.59504 3.05041 3.07931 3.50970 3.69036 3.79661 3.82079 3.87269 4.02539 4.09832 4.15354 4.29434 4.32538 4.41306 4.55198 4.60024 4.63269 4.72312 4.77798 4.86945 4.88352 4.93990 4.96286 4.97887 5.00115 5.07859 5.08809 5.21020 5.21663 5.26052 5.31556 5.43469 5.47319 5.63109 5.64835 5.78914 6.33460 6.62884 6.76712 7.29326 7.35684 8.88772 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.004599 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.893094 B = 6086.221235 C = 6576.383141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.190 4.190 5 H 0.150 0.850 6 C 0.542 3.458 7 O -0.585 6.585 8 N -0.707 5.707 9 C 0.149 3.851 10 H 0.079 0.921 11 C -0.122 4.122 12 C -0.121 4.121 13 C 0.006 3.994 14 H 0.030 0.970 15 C -0.508 4.508 16 H 0.039 0.961 17 C 0.016 3.984 18 N -0.950 5.950 19 Si 0.936 3.064 20 H -0.269 1.269 21 H -0.297 1.297 22 H -0.247 1.247 23 C -0.104 4.104 24 C -0.082 4.082 25 H 0.137 0.863 26 C -0.151 4.151 27 C -0.170 4.170 28 C -0.166 4.166 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.410 0.590 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.735 11.852 6.737 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.131 4.131 3 H 0.109 0.891 4 C -0.211 4.211 5 H 0.168 0.832 6 C 0.330 3.670 7 O -0.466 6.466 8 N -0.357 5.357 9 C 0.044 3.956 10 H 0.097 0.903 11 C -0.160 4.160 12 C -0.159 4.159 13 C -0.013 4.013 14 H 0.048 0.952 15 C -0.546 4.546 16 H 0.058 0.942 17 C -0.181 4.181 18 N -0.591 5.591 19 Si 0.762 3.238 20 H -0.194 1.194 21 H -0.224 1.224 22 H -0.171 1.171 23 C -0.142 4.142 24 C -0.101 4.101 25 H 0.155 0.845 26 C -0.169 4.169 27 C -0.207 4.207 28 C -0.203 4.203 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.246 0.754 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.455 12.525 6.516 21.682 hybrid contribution 1.267 -0.482 0.164 1.365 sum -15.189 12.043 6.681 20.502 Atomic orbital electron populations 1.21388 0.90111 1.02893 1.03030 1.22432 0.96482 0.93721 1.00488 0.89136 1.22606 0.96709 1.06089 0.95647 0.83229 1.20140 0.84774 0.84291 0.77759 1.90646 1.80059 1.22204 1.53645 1.46198 1.17439 1.12658 1.59406 1.21494 0.83073 0.97224 0.93815 0.90255 1.22711 0.97310 0.97303 0.98723 1.22777 0.98060 0.95862 0.99200 1.19956 0.94557 0.93757 0.93071 0.95170 1.21347 1.02372 0.91666 1.39175 0.94235 1.25771 1.00252 0.96392 0.95676 1.70041 1.26707 1.15539 1.46816 0.85992 0.77918 0.80150 0.79745 1.19423 1.22411 1.17097 1.22292 0.96809 0.95758 0.99356 1.22005 0.96766 1.01712 0.89571 0.84504 1.21776 0.97209 1.06613 0.91282 1.22973 1.03563 0.92643 1.01502 1.23039 1.03401 0.97087 0.96764 0.90462 0.91869 0.91234 0.75427 0.90878 0.92176 0.92439 0.94060 0.92710 0.91524 0.91139 0.90228 0.87250 0.89515 0.89393 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 10.19 71.98 0.73 -0.77 16 2 C -0.11 -2.14 5.63 -10.79 -0.06 -2.20 16 3 H 0.09 2.17 7.91 -2.39 -0.02 2.16 16 4 C -0.19 -3.99 5.82 -11.54 -0.07 -4.06 16 5 H 0.15 2.44 8.05 -2.38 -0.02 2.42 16 6 C 0.54 15.76 5.85 87.66 0.51 16.28 16 7 O -0.58 -21.42 16.25 -3.03 -0.05 -21.47 16 8 N -0.71 -20.35 5.02 -439.10 -2.20 -22.55 16 9 C 0.15 4.87 3.23 45.71 0.15 5.02 16 10 H 0.08 2.66 7.59 -2.39 -0.02 2.64 16 11 C -0.12 -4.16 6.54 31.71 0.21 -3.95 16 12 C -0.12 -4.87 5.31 31.93 0.17 -4.70 16 13 C 0.01 0.25 2.27 -10.46 -0.02 0.22 16 14 H 0.03 1.36 7.06 -2.39 -0.02 1.35 16 15 C -0.51 -27.76 9.05 25.60 0.23 -27.53 16 16 H 0.04 2.37 7.79 -2.91 -0.02 2.35 16 17 C 0.02 0.91 5.46 84.66 0.46 1.38 16 18 N -0.95 -58.47 13.96 21.45 0.30 -58.18 16 19 Si 0.94 44.20 24.65 68.60 1.69 45.89 16 20 H -0.27 -12.20 7.10 99.48 0.71 -11.50 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.25 -10.89 6.47 99.48 0.64 -10.24 16 23 C -0.10 -3.79 6.13 31.32 0.19 -3.60 16 24 C -0.08 -1.50 5.57 -10.79 -0.06 -1.56 16 25 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 26 C -0.15 -3.33 5.50 -10.79 -0.06 -3.38 16 27 C -0.17 -3.24 10.24 30.59 0.31 -2.93 16 28 C -0.17 -3.13 10.25 30.59 0.31 -2.81 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.75 7.90 -2.39 -0.02 0.73 16 32 H 0.41 10.71 8.31 -92.71 -0.77 9.94 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.01 7.40 -2.39 -0.02 1.99 16 35 H 0.06 2.40 8.05 -2.38 -0.02 2.38 16 36 H 0.04 1.68 5.28 -2.39 -0.01 1.67 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.07 2.46 7.13 -2.39 -0.02 2.44 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.08 2.24 6.25 -2.39 -0.01 2.22 16 41 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -67.07 347.91 2.90 -64.17 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.15 Total: 26.73 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 3.01 Total: -34.60 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.90 Total: -80.73 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.69 Total: 45.89 kcal Total: -67.07 2.90 -64.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529443693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.023 kcal (2) G-P(sol) polarization free energy of solvation -67.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds