Wall clock time and date at job start Mon Mar 30 2020 02:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.54570 * 2 1 4 4 C 1.53069 * 117.53122 * 145.71053 * 2 1 3 5 5 H 1.08999 * 117.49573 * 214.95580 * 4 2 1 6 6 C 1.53005 * 117.51526 * 359.97438 * 4 2 1 7 7 C 1.52994 * 117.50215 * 197.22667 * 6 4 2 8 8 C 1.52999 * 60.00168 * 252.51332 * 7 6 4 9 9 C 1.52993 * 117.49964 * 214.32578 * 2 1 3 10 10 H 1.08998 * 117.50110 * 144.97629 * 9 2 1 11 11 C 1.50706 * 117.50081 * 359.97438 * 9 2 1 12 12 O 1.21284 * 119.99577 * 291.25326 * 11 9 2 13 13 N 1.34775 * 119.99973 * 111.25143 * 11 9 2 14 14 C 1.46506 * 119.99407 * 180.02562 * 13 11 9 15 15 H 1.08998 * 110.01881 * 325.05914 * 14 13 11 16 16 C 1.53876 * 110.03106 * 86.45586 * 14 13 11 17 17 C 1.54268 * 106.59964 * 119.28252 * 16 14 13 18 18 C 1.54888 * 104.19475 * 23.60584 * 17 16 14 19 19 H 1.09001 * 110.75534 * 80.55872 * 18 17 16 20 20 C 1.50703 * 110.75640 * 203.74533 * 18 17 16 21 21 H 1.07997 * 120.00175 * 118.55062 * 20 18 17 22 22 C 1.37879 * 119.99607 * 298.54852 * 20 18 17 23 23 N 1.31509 * 120.00103 * 359.97438 * 22 20 18 24 24 Si 1.86806 * 119.99578 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47117 * 60.00373 * 24 22 20 26 26 H 1.48498 * 109.46662 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47015 * 299.99790 * 24 22 20 28 28 C 1.54270 * 110.02709 * 203.61858 * 14 13 11 29 29 H 1.09001 * 109.47146 * 154.27757 * 1 2 3 30 30 H 1.08995 * 109.47421 * 274.27943 * 1 2 3 31 31 H 1.09008 * 109.46880 * 34.28580 * 1 2 3 32 32 H 1.09000 * 115.54958 * 342.94435 * 6 4 2 33 33 H 1.09003 * 117.49577 * 0.02562 * 7 6 4 34 34 H 1.09004 * 117.49546 * 145.01976 * 7 6 4 35 35 H 1.08999 * 117.49480 * 252.51223 * 8 7 6 36 36 H 1.08997 * 117.51676 * 107.48008 * 8 7 6 37 37 H 0.96994 * 120.00241 * 359.97438 * 13 11 9 38 38 H 1.08997 * 110.02942 * 238.56311 * 16 14 13 39 39 H 1.09002 * 110.03396 * 359.94736 * 16 14 13 40 40 H 1.08994 * 110.48927 * 142.28995 * 17 16 14 41 41 H 1.09003 * 110.48011 * 264.93024 * 17 16 14 42 42 H 0.97003 * 119.99902 * 180.02562 * 23 22 20 43 43 H 1.08997 * 110.48725 * 335.78683 * 28 14 13 44 44 H 1.08996 * 110.48447 * 98.43254 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2375 -1.1214 0.7647 5 1 3.1729 -0.8754 1.2674 6 6 1.3610 -2.1572 1.4717 7 6 2.0187 -3.0227 2.5483 8 6 1.6498 -3.6340 1.1951 9 6 2.2364 -1.1207 -0.7652 10 1 3.1711 -0.8746 -1.2691 11 6 1.3720 -2.1406 -1.4609 12 8 0.7128 -2.9225 -0.8090 13 7 1.3317 -2.1837 -2.8073 14 6 0.4909 -3.1748 -3.4835 15 1 0.4754 -4.1030 -2.9122 16 6 -0.9395 -2.6308 -3.6443 17 6 -1.2249 -2.5824 -5.1595 18 6 -0.2522 -3.6260 -5.7628 19 1 -0.6502 -4.6346 -5.6514 20 6 0.0267 -3.3210 -7.2120 21 1 1.0340 -3.1008 -7.5334 22 6 -1.0042 -3.3232 -8.1276 23 7 -2.2306 -3.5918 -7.7364 24 14 -0.6585 -2.9444 -9.9240 25 1 0.3026 -3.9395 -10.4636 26 1 -1.9251 -3.0111 -10.6964 27 1 -0.0785 -1.5823 -10.0399 28 6 1.0249 -3.4379 -4.9067 29 1 -0.3633 -0.9258 -0.4460 30 1 -0.3634 0.0767 1.0247 31 1 -0.3633 0.8492 -0.5790 32 1 0.3212 -1.8678 1.6239 33 1 3.0759 -2.8539 2.7532 34 1 1.4117 -3.3026 3.4093 35 1 0.8002 -4.3161 1.1660 36 1 2.4642 -3.8677 0.5093 37 1 1.8586 -1.5582 -3.3287 38 1 -1.6493 -3.2955 -3.1518 39 1 -1.0084 -1.6298 -3.2184 40 1 -2.2585 -2.8624 -5.3622 41 1 -1.0129 -1.5894 -5.5560 42 1 -2.9558 -3.5937 -8.3807 43 1 1.6001 -2.5832 -5.2623 44 1 1.6329 -4.3424 -4.9248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529443696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:03 Heat of formation + Delta-G solvation = -0.564427 kcal Electronic energy + Delta-G solvation = -22069.373743 eV Core-core repulsion = 18987.564020 eV Total energy + Delta-G solvation = -3081.809722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40399 -38.13212 -36.53558 -35.34852 -33.53793 -31.90440 -28.78296 -28.14016 -27.22614 -24.69192 -23.67474 -22.54412 -22.19880 -19.91527 -19.43270 -19.14718 -18.85192 -16.87844 -16.50465 -15.95726 -15.32465 -14.99569 -14.77364 -14.41518 -14.28447 -13.66684 -13.19192 -12.91828 -12.60599 -12.40627 -12.32917 -12.09916 -11.77644 -11.38700 -11.14783 -11.06371 -11.04474 -10.92690 -10.74122 -10.59131 -10.48068 -10.24229 -9.97885 -9.85080 -9.69165 -9.51258 -9.22376 -8.86916 -8.81103 -8.46061 -8.35747 -6.00764 -4.04474 2.74286 3.31026 3.36301 3.37966 3.45668 3.68737 4.05662 4.43272 4.58920 4.64482 4.79147 5.04903 5.13775 5.23727 5.26025 5.31242 5.37494 5.48638 5.60035 5.68481 5.70042 5.73623 5.76287 5.85869 5.91551 5.99971 6.18294 6.26186 6.32787 6.35554 6.40691 6.43044 6.61862 6.68869 6.76996 6.92317 6.98727 7.28330 7.35224 7.72185 7.88253 7.93125 8.02980 8.42690 8.62030 8.97372 9.59645 11.08234 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.003583 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.588002 B = 7811.909883 C = 7941.132410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.089 4.089 5 H 0.109 0.891 6 C -0.108 4.108 7 C -0.206 4.206 8 C -0.114 4.114 9 C -0.188 4.188 10 H 0.117 0.883 11 C 0.536 3.464 12 O -0.526 6.526 13 N -0.717 5.717 14 C 0.141 3.859 15 H 0.078 0.922 16 C -0.133 4.133 17 C -0.100 4.100 18 C 0.052 3.948 19 H 0.031 0.969 20 C -0.516 4.516 21 H 0.054 0.946 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.890 3.110 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 C -0.121 4.121 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.395 0.605 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 6.186 16.296 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 H 0.128 0.872 4 C -0.107 4.107 5 H 0.127 0.873 6 C -0.126 4.126 7 C -0.243 4.243 8 C -0.151 4.151 9 C -0.209 4.209 10 H 0.135 0.865 11 C 0.323 3.677 12 O -0.403 6.403 13 N -0.367 5.367 14 C 0.037 3.963 15 H 0.096 0.904 16 C -0.172 4.172 17 C -0.138 4.138 18 C 0.033 3.967 19 H 0.050 0.950 20 C -0.554 4.554 21 H 0.073 0.927 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.718 3.282 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 C -0.159 4.159 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.229 0.771 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.515 5.578 16.680 19.126 hybrid contribution 0.502 0.663 -1.424 1.649 sum 8.017 6.241 15.256 18.329 Atomic orbital electron populations 1.21467 0.92335 1.03151 1.02037 1.22360 0.96025 0.93370 1.02013 0.87211 1.21850 1.00057 0.98347 0.90454 0.87347 1.21414 0.98335 0.92059 1.00772 1.23253 1.00550 1.06661 0.93815 1.22497 1.02195 0.95254 0.95180 1.22477 1.01772 1.01147 0.95521 0.86483 1.19493 0.82024 0.83874 0.82342 1.90716 1.43846 1.41314 1.64454 1.46344 1.47584 1.36789 1.06006 1.21814 0.90225 0.90619 0.93628 0.90388 1.22637 0.95258 0.99429 0.99854 1.22297 1.01861 0.99863 0.89773 1.19541 0.88906 0.95201 0.93049 0.95045 1.21063 0.93930 1.47975 0.92438 0.92742 1.24973 0.95181 0.95134 0.98574 1.69949 0.99458 1.48866 1.34370 0.86704 0.77448 0.78846 0.85242 1.20327 1.21354 1.20345 1.22750 1.00509 1.00131 0.92535 0.90992 0.91949 0.92235 0.87895 0.89659 0.89541 0.89142 0.89944 0.77084 0.92771 0.93294 0.91318 0.93587 0.93009 0.92152 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.66 37.16 0.32 -1.17 16 2 C -0.12 -1.20 6.41 -90.59 -0.58 -1.79 16 3 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.09 -0.93 5.87 -90.58 -0.53 -1.47 16 5 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 6 C -0.11 -1.29 4.09 -90.62 -0.37 -1.66 16 7 C -0.21 -2.19 10.25 -26.73 -0.27 -2.46 16 8 C -0.11 -1.48 7.08 -26.73 -0.19 -1.67 16 9 C -0.19 -2.11 6.17 -91.77 -0.57 -2.68 16 10 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 11 C 0.54 7.77 6.06 -10.98 -0.07 7.70 16 12 O -0.53 -8.83 10.26 5.55 0.06 -8.77 16 13 N -0.72 -10.65 4.99 -52.71 -0.26 -10.92 16 14 C 0.14 2.52 3.23 -66.81 -0.22 2.30 16 15 H 0.08 1.48 7.61 -51.93 -0.39 1.08 16 16 C -0.13 -2.58 6.59 -25.61 -0.17 -2.75 16 17 C -0.10 -2.29 5.57 -25.07 -0.14 -2.43 16 18 C 0.05 1.25 2.82 -89.78 -0.25 1.00 16 19 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.52 -13.83 8.54 -34.44 -0.29 -14.12 16 21 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 22 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 23 N -0.89 -25.24 12.02 55.43 0.67 -24.58 16 24 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 28 C -0.12 -2.38 5.94 -25.07 -0.15 -2.53 16 29 H 0.07 1.01 5.71 -51.93 -0.30 0.71 16 30 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 32 H 0.10 1.32 6.72 -51.93 -0.35 0.97 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 36 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 37 H 0.40 5.11 8.34 -40.82 -0.34 4.77 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.91 7.92 -51.93 -0.41 0.49 16 40 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 41 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.06 1.14 7.63 -51.93 -0.40 0.75 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -28.49 343.15 -10.53 -39.02 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.57 Total: 6.17 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -3.57 Total: -22.07 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.40 Total: -35.50 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.49 -10.53 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529443696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.458 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds