Wall clock time and date at job start Mon Mar 30 2020 02:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46821 * 2 1 4 4 O 1.42908 * 109.46914 * 179.97438 * 3 2 1 5 5 C 1.35892 * 116.99751 * 180.02562 * 4 3 2 6 6 C 1.38736 * 120.05364 * 180.02562 * 5 4 3 7 7 C 1.38145 * 119.94336 * 180.02562 * 6 5 4 8 8 C 1.38264 * 120.05726 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.94504 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.47089 * 90.00169 * 9 8 7 11 11 C 1.46904 * 110.99841 * 66.04861 * 10 9 8 12 12 C 1.46899 * 111.00230 * 190.00004 * 10 9 8 13 13 H 1.09002 * 109.47043 * 55.00375 * 12 10 9 14 14 C 1.52997 * 109.47254 * 295.00304 * 12 10 9 15 15 C 1.50699 * 109.47244 * 175.00202 * 12 10 9 16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47319 * 60.00570 * 19 17 15 21 21 H 1.48503 * 109.46734 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47266 * 300.00384 * 19 17 15 23 23 C 1.38261 * 120.10998 * 0.26069 * 8 7 6 24 24 C 1.38146 * 120.05869 * 359.44202 * 23 8 7 25 25 H 1.09001 * 109.47052 * 60.00030 * 1 2 3 26 26 H 1.08994 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47234 * 300.00295 * 1 2 3 28 28 H 1.09003 * 109.47065 * 240.00650 * 2 1 3 29 29 H 1.08995 * 109.47456 * 120.00114 * 2 1 3 30 30 H 1.08995 * 109.47106 * 60.00449 * 3 2 1 31 31 H 1.09001 * 109.47283 * 299.99828 * 3 2 1 32 32 H 1.08005 * 120.02948 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.96948 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47076 * 330.00310 * 9 8 7 35 35 H 1.09000 * 109.47366 * 210.00937 * 9 8 7 36 36 H 1.08992 * 109.47139 * 183.95276 * 11 10 9 37 37 H 1.08998 * 109.46871 * 303.95426 * 11 10 9 38 38 H 1.09004 * 109.46908 * 63.95125 * 11 10 9 39 39 H 1.09002 * 109.47153 * 300.00004 * 14 12 10 40 40 H 1.08998 * 109.47533 * 59.99633 * 14 12 10 41 41 H 1.08996 * 109.47853 * 179.97438 * 14 12 10 42 42 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.97418 * 179.69957 * 23 8 7 44 44 H 1.07994 * 120.03134 * 180.25274 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0859 2.6534 0.0012 6 6 5.4713 2.7274 0.0013 7 6 6.0960 3.9596 0.0025 8 6 5.3418 5.1184 0.0041 9 6 6.0259 6.4612 0.0059 10 7 6.2481 6.8994 -1.3784 11 6 4.9727 7.1580 -2.0599 12 6 7.1180 8.0823 -1.4230 13 1 8.0478 7.8696 -0.8954 14 6 6.4099 9.2616 -0.7533 15 6 7.4225 8.4281 -2.8578 16 1 7.0106 7.8294 -3.6567 17 6 8.2261 9.5096 -3.1506 18 7 8.7272 10.2390 -2.1778 19 14 8.6029 9.9388 -4.9292 20 1 7.3359 10.2283 -5.6477 21 1 9.4824 11.1345 -4.9742 22 1 9.2903 8.7944 -5.5796 23 6 3.9610 5.0473 0.0100 24 6 3.3314 3.8177 0.0027 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 6.0609 1.8225 0.0013 33 1 7.1744 4.0177 0.0029 34 1 6.9839 6.3801 0.5196 35 1 5.3980 7.1882 0.5209 36 1 5.1629 7.4128 -3.1024 37 1 4.3479 6.2661 -2.0120 38 1 4.4609 7.9868 -1.5707 39 1 5.4801 9.4743 -1.2809 40 1 6.1897 9.0115 0.2845 41 1 7.0555 10.1393 -0.7859 42 1 9.2928 10.9996 -2.3838 43 1 3.3741 5.9539 0.0162 44 1 2.2529 3.7627 0.0032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538740468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:22 Heat of formation + Delta-G solvation = -17.503874 kcal Electronic energy + Delta-G solvation = -21232.859260 eV Core-core repulsion = 18150.314988 eV Total energy + Delta-G solvation = -3082.544272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.10445 -38.18038 -36.54291 -34.19484 -32.78887 -30.87455 -30.60120 -28.30984 -27.02535 -26.10926 -25.14622 -23.38971 -22.93739 -21.47723 -20.78798 -19.13922 -18.10099 -16.43949 -16.22235 -15.99856 -15.36454 -14.93075 -14.44393 -14.32899 -14.11132 -14.04870 -13.51429 -13.14019 -13.10580 -12.63676 -12.54339 -12.40808 -12.32980 -11.63682 -11.50294 -11.41539 -11.17188 -11.03157 -10.98856 -10.75430 -10.73117 -10.57048 -10.56592 -10.37207 -9.99280 -9.77901 -8.87781 -8.76928 -8.36551 -7.91422 -7.08739 -5.98828 -4.02389 1.55019 1.63213 3.12700 3.34194 3.38204 3.41551 3.94938 4.44383 4.56794 4.57633 4.89660 4.94894 4.99065 5.10230 5.14398 5.20257 5.30514 5.32600 5.38806 5.56093 5.60091 5.62903 5.72313 5.77627 5.90212 5.98298 6.17592 6.25673 6.33534 6.44107 6.45805 6.55175 6.69999 6.84103 6.93038 6.96460 6.98611 7.14583 7.49778 7.51315 7.74343 7.85866 8.14620 8.41259 8.62753 9.03423 9.62451 11.08215 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033728 B = 0.003063 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.970044 B = 9137.810414 C = 9310.601850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.320 6.320 5 C 0.116 3.884 6 C -0.153 4.153 7 C -0.061 4.061 8 C -0.094 4.094 9 C 0.092 3.908 10 N -0.529 5.529 11 C 0.032 3.968 12 C 0.210 3.790 13 H 0.039 0.961 14 C -0.173 4.173 15 C -0.499 4.499 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.076 4.076 24 C -0.210 4.210 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.016 0.984 39 H 0.030 0.970 40 H 0.007 0.993 41 H 0.088 0.912 42 H 0.260 0.740 43 H 0.120 0.880 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.483 -15.675 6.345 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.234 6.234 5 C 0.071 3.929 6 C -0.172 4.172 7 C -0.080 4.080 8 C -0.095 4.095 9 C -0.036 4.036 10 N -0.252 5.252 11 C -0.116 4.116 12 C 0.104 3.896 13 H 0.057 0.943 14 C -0.232 4.232 15 C -0.537 4.537 16 H 0.080 0.920 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.095 4.095 24 C -0.229 4.229 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.026 0.974 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.030 -16.073 6.116 21.577 hybrid contribution -0.423 1.225 -0.546 1.406 sum -13.454 -14.849 5.570 20.797 Atomic orbital electron populations 1.21692 0.94372 1.02418 1.02243 1.21480 0.95936 0.95065 1.03625 1.22811 0.78996 0.98464 1.01334 1.86012 1.20852 1.27446 1.89136 1.18922 0.92286 0.83740 0.97922 1.20389 0.91159 0.98567 1.07059 1.20886 1.00126 0.90662 0.96310 1.19927 0.93130 0.95855 1.00591 1.20977 0.98946 0.91195 0.92518 1.62383 1.13966 1.37314 1.11557 1.22280 0.91154 0.97784 1.00390 1.19325 0.90602 0.82954 0.96675 0.94288 1.22407 1.00643 1.04608 0.95541 1.21085 1.29526 1.11547 0.91577 0.92011 1.24926 0.95894 0.96241 0.97254 1.69875 1.33905 1.18554 1.31132 0.86585 0.78173 0.77708 0.85067 1.20417 1.21423 1.20232 1.20857 0.94282 0.96703 0.97621 1.21111 0.99466 0.92434 1.09873 0.92336 0.91811 0.92392 0.90860 0.90926 0.92260 0.92156 0.85623 0.85171 0.90767 0.94863 0.91035 0.93684 0.96543 0.95103 0.97387 0.89354 0.92986 0.86235 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.92 6.30 -26.73 -0.17 -1.09 16 3 C 0.06 0.56 4.74 37.16 0.18 0.73 16 4 O -0.32 -4.10 10.14 -19.40 -0.20 -4.30 16 5 C 0.12 1.63 6.69 -39.21 -0.26 1.36 16 6 C -0.15 -2.17 9.99 -39.43 -0.39 -2.57 16 7 C -0.06 -0.93 9.69 -39.61 -0.38 -1.32 16 8 C -0.09 -1.53 4.88 -104.60 -0.51 -2.04 16 9 C 0.09 1.68 4.56 -4.98 -0.02 1.66 16 10 N -0.53 -11.45 4.73 -237.73 -1.13 -12.57 16 11 C 0.03 0.65 8.56 60.07 0.51 1.17 16 12 C 0.21 5.29 2.34 -68.87 -0.16 5.13 16 13 H 0.04 1.07 8.03 -51.93 -0.42 0.66 16 14 C -0.17 -4.17 8.28 37.16 0.31 -3.86 16 15 C -0.50 -13.67 7.94 -34.44 -0.27 -13.95 16 16 H 0.06 1.70 6.75 -52.49 -0.35 1.35 16 17 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 18 N -0.90 -25.49 11.32 55.43 0.63 -24.86 16 19 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.08 -1.12 7.90 -39.61 -0.31 -1.43 16 24 C -0.21 -2.82 9.04 -39.43 -0.36 -3.18 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 32 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 35 H 0.03 0.61 6.88 -51.93 -0.36 0.25 16 36 H 0.07 1.54 6.53 -51.93 -0.34 1.20 16 37 H 0.04 0.81 5.91 -51.93 -0.31 0.50 16 38 H 0.02 0.32 6.28 -51.93 -0.33 0.00 16 39 H 0.03 0.72 6.39 -51.93 -0.33 0.39 16 40 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 41 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.12 1.64 8.00 -52.49 -0.42 1.22 16 44 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -29.16 345.45 -9.23 -38.40 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.15 Total: 0.06 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -1.57 Total: -18.36 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.50 Total: -37.43 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.20 Total: -4.30 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.16 -9.23 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538740468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.893 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds