Wall clock time and date at job start Mon Mar 30 2020 02:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46821 * 2 1 4 4 O 1.42908 * 109.46914 * 179.97438 * 3 2 1 5 5 C 1.35892 * 116.99751 * 180.02562 * 4 3 2 6 6 C 1.38736 * 120.05364 * 180.02562 * 5 4 3 7 7 C 1.38145 * 119.94336 * 180.02562 * 6 5 4 8 8 C 1.38264 * 120.05726 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.94504 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.47089 * 90.00169 * 9 8 7 11 11 C 1.46904 * 110.99841 * 66.04861 * 10 9 8 12 12 C 1.46899 * 111.00230 * 190.00004 * 10 9 8 13 13 H 1.09002 * 109.47043 * 55.00375 * 12 10 9 14 14 C 1.52997 * 109.47254 * 295.00304 * 12 10 9 15 15 C 1.50699 * 109.47244 * 175.00202 * 12 10 9 16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47319 * 60.00570 * 19 17 15 21 21 H 1.48503 * 109.46734 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47266 * 300.00384 * 19 17 15 23 23 C 1.38261 * 120.10998 * 0.26069 * 8 7 6 24 24 C 1.38146 * 120.05869 * 359.44202 * 23 8 7 25 25 H 1.09001 * 109.47052 * 60.00030 * 1 2 3 26 26 H 1.08994 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47234 * 300.00295 * 1 2 3 28 28 H 1.09003 * 109.47065 * 240.00650 * 2 1 3 29 29 H 1.08995 * 109.47456 * 120.00114 * 2 1 3 30 30 H 1.08995 * 109.47106 * 60.00449 * 3 2 1 31 31 H 1.09001 * 109.47283 * 299.99828 * 3 2 1 32 32 H 1.08005 * 120.02948 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.96948 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47076 * 330.00310 * 9 8 7 35 35 H 1.09000 * 109.47366 * 210.00937 * 9 8 7 36 36 H 1.08992 * 109.47139 * 183.95276 * 11 10 9 37 37 H 1.08998 * 109.46871 * 303.95426 * 11 10 9 38 38 H 1.09004 * 109.46908 * 63.95125 * 11 10 9 39 39 H 1.09002 * 109.47153 * 300.00004 * 14 12 10 40 40 H 1.08998 * 109.47533 * 59.99633 * 14 12 10 41 41 H 1.08996 * 109.47853 * 179.97438 * 14 12 10 42 42 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.97418 * 179.69957 * 23 8 7 44 44 H 1.07994 * 120.03134 * 180.25274 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0859 2.6534 0.0012 6 6 5.4713 2.7274 0.0013 7 6 6.0960 3.9596 0.0025 8 6 5.3418 5.1184 0.0041 9 6 6.0259 6.4612 0.0059 10 7 6.2481 6.8994 -1.3784 11 6 4.9727 7.1580 -2.0599 12 6 7.1180 8.0823 -1.4230 13 1 8.0478 7.8696 -0.8954 14 6 6.4099 9.2616 -0.7533 15 6 7.4225 8.4281 -2.8578 16 1 7.0106 7.8294 -3.6567 17 6 8.2261 9.5096 -3.1506 18 7 8.7272 10.2390 -2.1778 19 14 8.6029 9.9388 -4.9292 20 1 7.3359 10.2283 -5.6477 21 1 9.4824 11.1345 -4.9742 22 1 9.2903 8.7944 -5.5796 23 6 3.9610 5.0473 0.0100 24 6 3.3314 3.8177 0.0027 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 6.0609 1.8225 0.0013 33 1 7.1744 4.0177 0.0029 34 1 6.9839 6.3801 0.5196 35 1 5.3980 7.1882 0.5209 36 1 5.1629 7.4128 -3.1024 37 1 4.3479 6.2661 -2.0120 38 1 4.4609 7.9868 -1.5707 39 1 5.4801 9.4743 -1.2809 40 1 6.1897 9.0115 0.2845 41 1 7.0555 10.1393 -0.7859 42 1 9.2928 10.9996 -2.3838 43 1 3.3741 5.9539 0.0162 44 1 2.2529 3.7627 0.0032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000538740468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:21 Heat of formation + Delta-G solvation = -33.364311 kcal Electronic energy + Delta-G solvation = -21233.547020 eV Core-core repulsion = 18150.314988 eV Total energy + Delta-G solvation = -3083.232032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15645 -39.49084 -37.99387 -35.01944 -34.57085 -32.08765 -31.93618 -30.04129 -28.11864 -27.32977 -27.11528 -24.94141 -23.89469 -22.41687 -21.93173 -20.88754 -19.09258 -18.23002 -17.22229 -17.12822 -16.98332 -16.33284 -16.13916 -15.44140 -15.26774 -15.03073 -14.80563 -14.60687 -14.40686 -14.19204 -13.51367 -13.46421 -13.34210 -13.03417 -12.91851 -12.80186 -12.61274 -12.54554 -12.34101 -12.25843 -12.10259 -12.06892 -11.97471 -11.60219 -11.56657 -11.46715 -10.90040 -10.47845 -9.88785 -9.08492 -8.76655 -8.09086 -6.19910 0.44364 0.48032 1.43434 1.44974 1.52504 2.25225 2.43891 2.79452 3.19729 3.61582 3.83834 3.95396 3.96781 3.99393 4.09110 4.30798 4.32404 4.44971 4.48799 4.56669 4.59554 4.67605 4.68430 4.79790 4.82468 4.84776 4.91631 4.91752 5.12753 5.13226 5.16863 5.19415 5.20171 5.31853 5.38563 5.41736 5.56110 5.71822 5.79703 5.81272 5.86516 6.21063 6.49389 6.51427 6.76066 6.93524 7.49100 8.96591 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033728 B = 0.003063 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.970044 B = 9137.810414 C = 9310.601850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.050 3.950 4 O -0.331 6.331 5 C 0.116 3.884 6 C -0.160 4.160 7 C -0.069 4.069 8 C -0.113 4.113 9 C 0.098 3.902 10 N -0.540 5.540 11 C 0.040 3.960 12 C 0.215 3.785 13 H 0.007 0.993 14 C -0.158 4.158 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.958 3.042 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.078 4.078 24 C -0.206 4.206 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.032 0.968 40 H 0.026 0.974 41 H 0.061 0.939 42 H 0.261 0.739 43 H 0.130 0.870 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 -16.840 6.069 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.024 4.024 4 O -0.245 6.245 5 C 0.070 3.930 6 C -0.179 4.179 7 C -0.088 4.088 8 C -0.114 4.114 9 C -0.030 4.030 10 N -0.263 5.263 11 C -0.108 4.108 12 C 0.108 3.892 13 H 0.025 0.975 14 C -0.218 4.218 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.784 3.216 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.097 4.097 24 C -0.225 4.225 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.148 0.852 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.890 -17.257 5.846 23.531 hybrid contribution 0.088 1.466 -0.405 1.523 sum -14.802 -15.792 5.441 22.317 Atomic orbital electron populations 1.21685 0.92864 1.03212 1.02657 1.21497 0.97114 0.93784 1.03444 1.23117 0.77189 0.99995 1.02123 1.86019 1.22827 1.26864 1.88792 1.19075 0.92402 0.84483 0.96994 1.20551 0.91805 0.98616 1.06887 1.20947 1.00295 0.90963 0.96578 1.19765 0.93934 0.94717 1.03005 1.20917 0.99008 0.92601 0.90470 1.62260 1.14557 1.35542 1.13945 1.22207 0.90643 0.98919 0.99005 1.19077 0.90293 0.84575 0.95275 0.97522 1.22199 0.99845 1.03050 0.96671 1.21348 1.29725 1.11654 0.92575 0.92666 1.25680 0.95761 0.96188 1.01111 1.70003 1.34289 1.18839 1.32899 0.85612 0.78133 0.77433 0.80434 1.19690 1.20986 1.19948 1.20975 0.93637 0.97748 0.97299 1.21345 1.00796 0.91597 1.08754 0.92049 0.90885 0.91851 0.91228 0.90988 0.91186 0.91525 0.84318 0.85185 0.91485 0.94625 0.92929 0.91387 0.96300 0.94905 0.95484 0.92012 0.92989 0.85238 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.58 16 2 C -0.12 -1.54 6.30 30.60 0.19 -1.34 16 3 C 0.05 0.82 4.74 71.98 0.34 1.16 16 4 O -0.33 -7.77 10.14 -92.33 -0.94 -8.71 16 5 C 0.12 3.01 6.69 22.51 0.15 3.16 16 6 C -0.16 -4.34 9.99 22.37 0.22 -4.12 16 7 C -0.07 -2.07 9.69 22.25 0.22 -1.85 16 8 C -0.11 -3.58 4.88 -19.85 -0.10 -3.67 16 9 C 0.10 3.57 4.56 85.56 0.39 3.96 16 10 N -0.54 -23.42 4.73 -906.06 -4.29 -27.71 16 11 C 0.04 1.60 8.56 127.69 1.09 2.69 16 12 C 0.21 11.00 2.34 44.17 0.10 11.11 16 13 H 0.01 0.39 8.03 -2.39 -0.02 0.37 16 14 C -0.16 -7.71 8.28 71.98 0.60 -7.11 16 15 C -0.51 -28.59 7.94 25.60 0.20 -28.39 16 16 H 0.06 3.08 6.75 -2.91 -0.02 3.06 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 19 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 C -0.08 -2.14 7.90 22.25 0.18 -1.96 16 24 C -0.21 -5.01 9.04 22.37 0.20 -4.80 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 31 H 0.07 1.01 7.67 -2.39 -0.02 0.99 16 32 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 34 H 0.07 2.49 7.94 -2.39 -0.02 2.47 16 35 H 0.04 1.27 6.88 -2.39 -0.02 1.26 16 36 H 0.05 2.25 6.53 -2.39 -0.02 2.24 16 37 H 0.07 2.34 5.91 -2.39 -0.01 2.33 16 38 H 0.02 0.72 6.28 -2.38 -0.01 0.71 16 39 H 0.03 1.53 6.39 -2.39 -0.02 1.52 16 40 H 0.03 1.16 6.75 -2.39 -0.02 1.14 16 41 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 42 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 43 H 0.13 3.24 8.00 -2.91 -0.02 3.22 16 44 H 0.15 2.73 6.30 -2.91 -0.02 2.71 16 Total: -1.00 -61.87 345.45 2.96 -58.91 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.96 Total: 14.99 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 4.95 Total: -30.70 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -4.05 Total: -80.65 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.94 Total: -8.71 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -61.87 2.96 -58.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538740468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.546 kcal (2) G-P(sol) polarization free energy of solvation -61.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds