Wall clock time and date at job start Mon Mar 30 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 H 1.09006 * 109.47367 * 184.45413 * 3 2 1 5 5 C 1.50699 * 109.47342 * 304.45717 * 3 2 1 6 6 H 1.08005 * 119.99608 * 115.14969 * 5 3 2 7 7 C 1.37876 * 120.00091 * 295.15089 * 5 3 2 8 8 N 1.31509 * 119.99886 * 352.96681 * 7 5 3 9 9 Si 1.86808 * 119.99969 * 172.97341 * 7 5 3 10 10 H 1.48497 * 109.47009 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47015 * 299.99946 * 9 7 5 12 12 H 1.48503 * 109.46963 * 60.00077 * 9 7 5 13 13 N 1.46905 * 109.47189 * 64.46023 * 3 2 1 14 14 C 1.46895 * 110.99963 * 85.29723 * 13 3 2 15 15 C 1.53004 * 109.46851 * 184.98622 * 14 13 3 16 16 C 1.53002 * 109.46801 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46872 * 179.97438 * 16 15 14 18 18 C 1.38278 * 119.97804 * 269.72843 * 17 16 15 19 19 C 1.38240 * 120.11563 * 179.72478 * 18 17 16 20 20 C 1.38171 * 120.05282 * 0.55071 * 19 18 17 21 21 C 1.38707 * 119.94092 * 359.72386 * 20 19 18 22 22 O 1.35906 * 120.05336 * 179.97438 * 21 20 19 23 23 C 1.42897 * 117.00253 * 0.02562 * 22 21 20 24 24 C 1.38133 * 119.96670 * 90.00376 * 17 16 15 25 25 H 1.08998 * 109.47541 * 185.53546 * 1 2 3 26 26 H 1.09005 * 109.46821 * 305.53793 * 1 2 3 27 27 H 1.09001 * 109.47015 * 65.53736 * 1 2 3 28 28 H 1.09004 * 109.46905 * 240.00483 * 2 1 3 29 29 H 1.08998 * 109.47090 * 120.00472 * 2 1 3 30 30 H 0.96998 * 120.00531 * 356.31746 * 8 7 5 31 31 H 1.00895 * 111.00045 * 209.25829 * 13 3 2 32 32 H 1.09004 * 109.47313 * 304.98302 * 14 13 3 33 33 H 1.09000 * 109.47146 * 64.98274 * 14 13 3 34 34 H 1.08997 * 109.47150 * 299.99607 * 15 14 13 35 35 H 1.09000 * 109.47530 * 59.99886 * 15 14 13 36 36 H 1.08997 * 109.47004 * 299.99766 * 16 15 14 37 37 H 1.09000 * 109.47254 * 60.00238 * 16 15 14 38 38 H 1.08000 * 119.94206 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.97991 * 180.25124 * 19 18 17 40 40 H 1.07998 * 120.02996 * 179.74849 * 20 19 18 41 41 H 1.09004 * 109.47057 * 299.99996 * 23 22 21 42 42 H 1.09008 * 109.47070 * 59.99236 * 23 22 21 43 43 H 1.08994 * 109.47790 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.02553 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0798 5 6 1.4496 2.1841 -1.1715 6 1 0.7754 3.0109 -1.0029 7 6 1.7700 1.8071 -2.4584 8 7 2.6940 0.8945 -2.6655 9 14 0.8917 2.5928 -3.9079 10 1 1.4151 2.0194 -5.1738 11 1 -0.5655 2.3250 -3.8079 12 1 1.1277 4.0588 -3.8942 13 7 1.6403 2.1032 1.2497 14 6 2.6091 1.8343 2.3206 15 6 2.0978 2.4323 3.6328 16 6 3.1067 2.1517 4.7484 17 6 2.6033 2.7413 6.0408 18 6 2.9394 4.0374 6.3861 19 6 2.4746 4.5830 7.5682 20 6 1.6821 3.8300 8.4133 21 6 1.3483 2.5277 8.0718 22 8 0.5693 1.7849 8.9016 23 6 0.1287 2.4090 10.1093 24 6 1.8113 1.9844 6.8821 25 1 -0.3634 -1.0228 0.0991 26 1 -0.3633 0.5974 0.8363 27 1 -0.3633 0.4256 -0.9354 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.1876 0.5254 -1.9166 31 1 1.5199 3.0954 1.1116 32 1 2.7336 0.7576 2.4361 33 1 3.5679 2.2855 2.0649 34 1 1.9734 3.5090 3.5174 35 1 1.1391 1.9812 3.8886 36 1 3.2306 1.0750 4.8637 37 1 4.0656 2.6026 4.4929 38 1 3.5627 4.6259 5.7292 39 1 2.7351 5.5969 7.8338 40 1 1.3225 4.2553 9.3386 41 1 0.9943 2.7013 10.7039 42 1 -0.4611 3.2931 9.8672 43 1 -0.4833 1.7088 10.6778 44 1 1.5525 0.9708 6.6139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565168480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:47 Heat of formation + Delta-G solvation = -54.962316 kcal Electronic energy + Delta-G solvation = -20826.437847 eV Core-core repulsion = 17742.269255 eV Total energy + Delta-G solvation = -3084.168592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09754 -38.95644 -38.37016 -35.92723 -33.99895 -32.63005 -31.53639 -30.43690 -28.23329 -27.69571 -25.83493 -25.17312 -23.49399 -22.70854 -21.65532 -21.16423 -18.91739 -18.67573 -17.28972 -16.96690 -16.64552 -16.56545 -16.15259 -15.74430 -15.50712 -15.25943 -14.83962 -14.56861 -14.40604 -14.22165 -13.92661 -13.53172 -13.27418 -13.15676 -12.86193 -12.71710 -12.61024 -12.55539 -12.22656 -12.04054 -11.95016 -11.88684 -11.79707 -11.70458 -11.53056 -11.44981 -10.57428 -10.40087 -9.76683 -9.15723 -9.11538 -8.56321 -6.27112 0.34850 0.48675 1.54894 1.62010 1.80831 2.36923 2.58831 2.77507 3.22767 3.49679 3.81916 3.87847 4.02675 4.14214 4.28682 4.36345 4.38294 4.38817 4.44446 4.49139 4.50266 4.56382 4.59437 4.71522 4.73243 4.74967 4.84380 4.87901 5.04789 5.10206 5.18650 5.22933 5.31567 5.36051 5.42320 5.49023 5.54342 5.69402 5.69729 5.83888 5.92082 6.11479 6.46356 6.51013 6.63109 6.85401 7.51732 8.80654 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030982 B = 0.002785 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.529233 B =10050.563141 C =10327.115318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C 0.207 3.793 4 H -0.042 1.042 5 C -0.598 4.598 6 H 0.050 0.950 7 C -0.025 4.025 8 N -0.935 5.935 9 Si 1.108 2.892 10 H -0.288 1.288 11 H -0.273 1.273 12 H -0.272 1.272 13 N -0.679 5.679 14 C 0.062 3.938 15 C -0.091 4.091 16 C -0.075 4.075 17 C -0.044 4.044 18 C -0.165 4.165 19 C -0.080 4.080 20 C -0.217 4.217 21 C 0.113 3.887 22 O -0.341 6.341 23 C 0.019 3.981 24 C -0.170 4.170 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.258 0.742 31 H 0.333 0.667 32 H 0.057 0.943 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 6.202 24.656 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.098 3.902 4 H -0.024 1.024 5 C -0.636 4.636 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.573 5.573 9 Si 0.931 3.069 10 H -0.213 1.213 11 H -0.198 1.198 12 H -0.197 1.197 13 N -0.309 5.309 14 C -0.068 4.068 15 C -0.129 4.129 16 C -0.112 4.112 17 C -0.044 4.044 18 C -0.183 4.183 19 C -0.098 4.098 20 C -0.236 4.236 21 C 0.068 3.932 22 O -0.255 6.255 23 C -0.075 4.075 24 C -0.189 4.189 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.150 0.850 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.495 5.460 23.196 23.961 hybrid contribution 1.114 0.442 1.315 1.779 sum -1.382 5.901 24.512 25.250 Atomic orbital electron populations 1.21301 0.95128 0.98974 1.01114 1.21378 0.97466 0.97467 0.97630 1.19070 0.90905 0.92565 0.87691 1.02411 1.22233 1.30389 1.18152 0.92843 0.93168 1.27022 0.96361 0.95808 1.03141 1.70900 1.22677 1.28675 1.35053 0.83041 0.75492 0.75621 0.72754 1.21323 1.19797 1.19711 1.60492 1.47777 1.15717 1.06908 1.21969 0.92880 0.99967 0.91977 1.21347 0.98675 1.00736 0.92137 1.20555 0.98780 1.01374 0.90531 1.19753 0.95390 0.94226 0.95044 1.21234 1.03341 0.95162 0.98541 1.21264 0.95025 1.00365 0.93119 1.21491 1.04969 0.93788 1.03329 1.19193 0.92075 0.91031 0.90880 1.86048 1.64350 1.42117 1.32955 1.23331 1.00328 1.00235 0.83639 1.20454 1.02860 1.01525 0.94050 0.94050 0.92518 0.94655 0.95068 0.94727 0.93209 0.84979 0.92458 0.96763 0.91909 0.92022 0.90596 0.89951 0.84724 0.83194 0.83328 0.91522 0.91783 0.86538 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.43 71.98 0.68 -4.12 16 2 C -0.10 -4.88 5.51 30.59 0.17 -4.71 16 3 C 0.21 10.47 1.93 44.17 0.09 10.55 16 4 H -0.04 -2.34 7.22 -2.38 -0.02 -2.36 16 5 C -0.60 -32.89 7.13 25.60 0.18 -32.71 16 6 H 0.05 2.74 7.67 -2.91 -0.02 2.72 16 7 C -0.02 -1.38 5.26 84.66 0.45 -0.94 16 8 N -0.94 -56.69 12.94 21.45 0.28 -56.41 16 9 Si 1.11 50.10 29.91 68.60 2.05 52.15 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 N -0.68 -28.71 5.62 -495.44 -2.78 -31.49 16 14 C 0.06 2.16 5.46 86.31 0.47 2.64 16 15 C -0.09 -2.55 5.50 30.60 0.17 -2.38 16 16 C -0.07 -1.75 5.34 29.85 0.16 -1.59 16 17 C -0.04 -1.02 5.13 -19.88 -0.10 -1.12 16 18 C -0.16 -3.35 9.70 22.28 0.22 -3.13 16 19 C -0.08 -1.39 10.04 22.25 0.22 -1.17 16 20 C -0.22 -3.93 9.04 22.37 0.20 -3.73 16 21 C 0.11 2.55 6.69 22.50 0.15 2.70 16 22 O -0.34 -7.25 10.50 -92.49 -0.97 -8.22 16 23 C 0.02 0.22 9.81 113.37 1.11 1.33 16 24 C -0.17 -4.17 9.64 22.37 0.22 -3.96 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 2.44 7.59 -2.38 -0.02 2.42 16 27 H 0.03 1.69 7.31 -2.39 -0.02 1.68 16 28 H 0.03 1.66 6.35 -2.38 -0.02 1.64 16 29 H 0.03 1.53 7.33 -2.39 -0.02 1.52 16 30 H 0.26 15.86 6.03 -92.71 -0.56 15.30 16 31 H 0.33 13.98 8.30 -89.70 -0.74 13.24 16 32 H 0.06 2.06 7.30 -2.39 -0.02 2.04 16 33 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 37 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 38 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.15 1.84 6.30 -2.91 -0.02 1.82 16 41 H 0.07 0.59 7.66 -2.38 -0.02 0.57 16 42 H 0.06 0.61 7.66 -2.38 -0.02 0.59 16 43 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -65.57 353.66 3.39 -62.18 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.43 Total: 24.12 kcal Atomic # 6 Polarization: -46.71 SS G_CDS: 4.38 Total: -42.34 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -2.50 Total: -87.90 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.97 Total: -8.22 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.05 Total: 52.15 kcal Total: -65.57 3.39 -62.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565168480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.218 kcal (2) G-P(sol) polarization free energy of solvation -65.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds