Wall clock time and date at job start Mon Mar 30 2020 01:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 H 1.08997 * 109.46928 * 304.24732 * 3 2 1 5 5 C 1.50702 * 109.47423 * 184.24992 * 3 2 1 6 6 H 1.08000 * 119.99397 * 240.00392 * 5 3 2 7 7 C 1.37874 * 120.00247 * 59.99394 * 5 3 2 8 8 N 1.31516 * 119.99836 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99987 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46950 * 90.00706 * 9 7 5 11 11 H 1.48503 * 109.47112 * 210.00207 * 9 7 5 12 12 H 1.48497 * 109.47640 * 330.00556 * 9 7 5 13 13 N 1.46899 * 109.47231 * 64.24504 * 3 2 1 14 14 C 1.46895 * 111.00209 * 205.87184 * 13 3 2 15 15 C 1.53001 * 109.47238 * 174.81733 * 14 13 3 16 16 C 1.53002 * 109.47239 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47058 * 180.02562 * 16 15 14 18 18 C 1.38285 * 119.97525 * 269.97829 * 17 16 15 19 19 C 1.38245 * 120.11478 * 180.02562 * 18 17 16 20 20 C 1.38168 * 120.05050 * 359.68277 * 19 18 17 21 21 C 1.38713 * 119.94422 * 0.61586 * 20 19 18 22 22 O 1.35907 * 120.05200 * 179.67497 * 21 20 19 23 23 C 1.42891 * 117.00121 * 359.72870 * 22 21 20 24 24 C 1.38127 * 119.96870 * 90.00214 * 17 16 15 25 25 H 1.08996 * 109.47636 * 54.90252 * 1 2 3 26 26 H 1.08999 * 109.46976 * 174.89899 * 1 2 3 27 27 H 1.09003 * 109.47552 * 294.89729 * 1 2 3 28 28 H 1.09002 * 109.47193 * 239.99894 * 2 1 3 29 29 H 1.09007 * 109.47369 * 119.99655 * 2 1 3 30 30 H 0.97003 * 119.99879 * 180.02562 * 8 7 5 31 31 H 1.00905 * 110.99912 * 81.91740 * 13 3 2 32 32 H 1.09002 * 109.47136 * 54.81988 * 14 13 3 33 33 H 1.09000 * 109.47529 * 294.82312 * 14 13 3 34 34 H 1.09002 * 109.46849 * 60.00079 * 15 14 13 35 35 H 1.08997 * 109.47432 * 300.00193 * 15 14 13 36 36 H 1.09002 * 109.47041 * 60.00313 * 16 15 14 37 37 H 1.08997 * 109.47162 * 300.00475 * 16 15 14 38 38 H 1.08004 * 119.94441 * 0.02562 * 18 17 16 39 39 H 1.08001 * 119.97382 * 179.97438 * 19 18 17 40 40 H 1.08003 * 120.02728 * 180.29265 * 20 19 18 41 41 H 1.09000 * 109.47437 * 60.00261 * 23 22 21 42 42 H 1.09006 * 109.47116 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47551 * 299.99692 * 23 22 21 44 44 H 1.07999 * 120.02620 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9778 -0.8495 5 6 3.5433 1.4438 -0.1053 6 1 4.1389 1.8918 0.6764 7 6 4.1583 0.8730 -1.1993 8 7 3.4329 0.3279 -2.1513 9 14 6.0217 0.8754 -1.3301 10 1 6.5639 -0.3533 -0.6964 11 1 6.4174 0.9102 -2.7610 12 1 6.5652 2.0709 -0.6370 13 7 1.6358 2.1048 1.2474 14 6 1.5392 3.5590 1.0640 15 6 0.9934 4.1991 2.3420 16 6 0.8933 5.7139 2.1511 17 6 0.3563 6.3444 3.4101 18 6 -1.0071 6.5080 3.5737 19 6 -1.5028 7.0865 4.7272 20 6 -0.6369 7.4969 5.7227 21 6 0.7314 7.3395 5.5584 22 8 1.5854 7.7484 6.5334 23 6 1.0053 8.3374 7.6988 24 6 1.2264 6.7589 4.3996 25 1 -0.3634 0.5908 -0.8407 26 1 -0.3633 -1.0236 -0.0914 27 1 -0.3634 0.4326 0.9322 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8656 -0.0740 -2.9209 31 1 2.2686 1.8764 1.9995 32 1 0.8678 3.7766 0.2333 33 1 2.5276 3.9645 0.8479 34 1 1.6648 3.9815 3.1726 35 1 0.0049 3.7937 2.5579 36 1 0.2221 5.9319 1.3204 37 1 1.8819 6.1190 1.9354 38 1 -1.6858 6.1832 2.7989 39 1 -2.5680 7.2136 4.8524 40 1 -1.0249 7.9445 6.6258 41 1 0.3389 7.6188 8.1758 42 1 1.7952 8.6179 8.3957 43 1 0.4394 9.2245 7.4144 44 1 2.2912 6.6316 4.2710 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565168498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:50 Heat of formation + Delta-G solvation = -53.438989 kcal Electronic energy + Delta-G solvation = -20769.698991 eV Core-core repulsion = 17685.596455 eV Total energy + Delta-G solvation = -3084.102536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07015 -38.85391 -38.07952 -35.68925 -33.97582 -32.81413 -31.50752 -30.39052 -28.37407 -27.98856 -25.92047 -24.35482 -23.44992 -22.44418 -21.74916 -21.17790 -18.73634 -18.64744 -17.23800 -16.91525 -16.79533 -16.62518 -16.25278 -15.72213 -15.25017 -15.11829 -14.69791 -14.48925 -14.28856 -14.13623 -13.70700 -13.33596 -13.16488 -13.09112 -12.94944 -12.84321 -12.63682 -12.52304 -12.39246 -12.16327 -12.09401 -11.85220 -11.69521 -11.56522 -11.46997 -11.23064 -10.97045 -10.46698 -9.73265 -9.12708 -9.03589 -8.05550 -6.28178 0.38151 0.51746 1.37938 1.39291 1.48419 2.38954 2.39900 2.80963 3.13677 3.63935 3.90314 3.91340 4.09377 4.23090 4.31674 4.39710 4.41183 4.46966 4.56356 4.59992 4.62346 4.66730 4.73489 4.77594 4.85994 4.90674 4.96267 5.01381 5.12381 5.19262 5.30729 5.36102 5.42796 5.43967 5.52131 5.52981 5.64976 5.74047 5.78142 5.87552 6.11437 6.21144 6.40272 6.48788 6.83231 7.02398 7.43409 8.90860 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.003073 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.147618 B = 9110.045372 C = 9938.434959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.561 4.561 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.683 5.683 14 C 0.070 3.930 15 C -0.090 4.090 16 C -0.076 4.076 17 C -0.042 4.042 18 C -0.163 4.163 19 C -0.079 4.079 20 C -0.217 4.217 21 C 0.113 3.887 22 O -0.341 6.341 23 C 0.019 3.981 24 C -0.172 4.172 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.328 0.672 32 H 0.054 0.946 33 H 0.009 0.991 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.308 15.251 16.228 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.600 4.600 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.311 5.311 14 C -0.060 4.060 15 C -0.128 4.128 16 C -0.114 4.114 17 C -0.042 4.042 18 C -0.181 4.181 19 C -0.097 4.097 20 C -0.236 4.236 21 C 0.068 3.932 22 O -0.255 6.255 23 C -0.075 4.075 24 C -0.191 4.191 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.154 0.846 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.768 15.051 15.955 24.011 hybrid contribution 2.053 0.101 -0.393 2.093 sum -7.715 15.152 15.562 23.049 Atomic orbital electron populations 1.21540 0.96299 0.99556 1.00656 1.21368 0.94503 0.98359 0.99972 1.18940 0.91479 0.91566 0.86841 0.98297 1.22184 0.94120 1.37870 1.05842 0.93339 1.25675 1.02240 0.94758 0.95401 1.70009 1.36472 1.38586 1.09949 0.85672 0.80963 0.78470 0.77206 1.20054 1.20809 1.19751 1.60830 1.54598 1.07657 1.08058 1.21797 0.97917 0.88632 0.97679 1.21359 1.01551 0.93472 0.96456 1.20563 1.01795 0.94402 0.94623 1.19756 0.93672 0.95788 0.95021 1.21247 0.94560 1.02695 0.99617 1.21271 1.00757 0.95395 0.92281 1.21486 0.91638 1.07847 1.02607 1.19187 0.89651 0.95349 0.89040 1.86047 1.35768 1.75445 1.28283 1.23325 1.01335 0.97850 0.85007 1.20443 1.00518 1.04747 0.93372 0.95039 0.93694 0.92394 0.92122 0.95405 0.92846 0.85596 0.92753 0.97250 0.92699 0.91224 0.89772 0.91141 0.84573 0.83099 0.83314 0.91729 0.86608 0.91536 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.73 71.98 0.70 -4.35 16 2 C -0.10 -5.06 5.45 30.59 0.17 -4.90 16 3 C 0.22 11.22 1.98 44.17 0.09 11.31 16 4 H 0.00 -0.05 7.70 -2.39 -0.02 -0.07 16 5 C -0.56 -30.97 8.47 25.60 0.22 -30.75 16 6 H 0.05 2.65 7.73 -2.91 -0.02 2.63 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -52.69 11.30 21.45 0.24 -52.44 16 9 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.68 -29.02 5.73 -495.46 -2.84 -31.87 16 14 C 0.07 2.60 5.51 86.30 0.48 3.08 16 15 C -0.09 -2.65 5.50 30.60 0.17 -2.48 16 16 C -0.08 -1.91 5.34 29.85 0.16 -1.75 16 17 C -0.04 -1.02 5.13 -19.88 -0.10 -1.12 16 18 C -0.16 -3.41 9.70 22.28 0.22 -3.20 16 19 C -0.08 -1.41 10.04 22.25 0.22 -1.19 16 20 C -0.22 -4.03 9.04 22.37 0.20 -3.82 16 21 C 0.11 2.62 6.69 22.51 0.15 2.77 16 22 O -0.34 -7.48 10.50 -92.51 -0.97 -8.45 16 23 C 0.02 0.23 9.81 113.37 1.11 1.34 16 24 C -0.17 -4.39 9.64 22.37 0.22 -4.18 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 2.23 7.88 -2.39 -0.02 2.21 16 28 H 0.06 3.34 5.97 -2.39 -0.01 3.32 16 29 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.33 13.83 8.45 -89.69 -0.76 13.07 16 32 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 33 H 0.01 0.38 8.11 -2.39 -0.02 0.36 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 1.94 8.09 -2.39 -0.02 1.92 16 37 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 38 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.15 1.89 6.30 -2.91 -0.02 1.87 16 41 H 0.06 0.64 7.65 -2.39 -0.02 0.62 16 42 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.07 0.62 7.67 -2.39 -0.02 0.60 16 44 H 0.12 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -63.04 358.61 3.10 -59.95 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.20 Total: 24.60 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 4.44 Total: -37.73 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.60 Total: -84.31 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.97 Total: -8.45 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -63.04 3.10 -59.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565168498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.508 kcal (2) G-P(sol) polarization free energy of solvation -63.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds