Wall clock time and date at job start Mon Mar 30 2020 02:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47265 * 2 1 4 4 O 1.42901 * 109.47010 * 119.99981 * 2 1 3 5 5 C 1.53004 * 109.46976 * 239.99862 * 2 1 3 6 6 C 1.53003 * 109.47132 * 185.38370 * 5 2 1 7 7 C 1.53005 * 109.47103 * 305.38465 * 5 2 1 8 8 N 1.46907 * 109.46865 * 297.82077 * 7 5 2 9 9 C 1.46898 * 110.99732 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46970 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00302 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00015 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99926 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00029 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47095 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47492 * 119.99883 * 14 12 10 17 17 H 1.48502 * 109.46910 * 240.00032 * 14 12 10 18 18 C 1.52994 * 109.47196 * 65.38026 * 5 2 1 19 19 C 1.50703 * 109.46997 * 60.00145 * 18 5 2 20 20 C 1.38237 * 120.00194 * 269.72796 * 19 18 5 21 21 C 1.38229 * 119.99981 * 179.76416 * 20 19 18 22 22 C 1.38237 * 120.00354 * 0.48522 * 21 20 19 23 23 C 1.38232 * 119.99530 * 359.78678 * 22 21 20 24 24 C 1.38230 * 120.00450 * 359.96193 * 23 22 21 25 25 H 1.09002 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46770 * 299.99960 * 1 2 3 27 27 H 1.08999 * 109.46966 * 59.99916 * 1 2 3 28 28 H 0.96695 * 114.00001 * 53.12485 * 4 2 1 29 29 H 1.09003 * 109.47018 * 60.00046 * 6 5 2 30 30 H 1.08996 * 109.47063 * 179.97438 * 6 5 2 31 31 H 1.08994 * 109.46836 * 300.00345 * 6 5 2 32 32 H 1.09000 * 109.47149 * 57.81622 * 7 5 2 33 33 H 1.09002 * 109.47292 * 177.82085 * 7 5 2 34 34 H 1.00907 * 110.99776 * 303.95119 * 8 7 5 35 35 H 1.08993 * 109.47269 * 299.99575 * 9 8 7 36 36 H 1.09008 * 109.47071 * 59.99849 * 9 8 7 37 37 H 0.97001 * 119.99967 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.47328 * 179.97438 * 18 5 2 39 39 H 1.08997 * 109.47521 * 300.00383 * 18 5 2 40 40 H 1.08001 * 119.99752 * 359.97438 * 20 19 18 41 41 H 1.08006 * 119.99806 * 180.25094 * 21 20 19 42 42 H 1.07998 * 120.00106 * 179.76695 * 22 21 20 43 43 H 1.08002 * 119.99808 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00472 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 6 3.5640 -0.8396 -1.1835 7 6 1.4224 -2.1195 -1.3187 8 7 1.8456 -2.9003 -0.1486 9 6 1.2710 -4.2518 -0.1818 10 6 1.7267 -5.0214 1.0310 11 1 2.3784 -4.5535 1.7541 12 6 1.3117 -6.3229 1.2178 13 7 0.5177 -6.8926 0.3376 14 14 1.8760 -7.2766 2.7216 15 1 2.7569 -6.4162 3.5516 16 1 0.6931 -7.6895 3.5187 17 1 2.6273 -8.4826 2.2896 18 6 1.6434 0.0737 -2.4948 19 6 2.2517 1.4509 -2.4264 20 6 1.5537 2.4861 -1.8330 21 6 2.1137 3.7481 -1.7660 22 6 3.3674 3.9774 -2.3013 23 6 4.0630 2.9435 -2.8997 24 6 3.5053 1.6802 -2.9621 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6377 -1.5593 1.2876 29 1 3.8465 -1.4061 -0.2961 30 1 3.9273 -1.3538 -2.0732 31 1 4.0039 0.1564 -1.1339 32 1 0.3356 -2.0366 -1.3265 33 1 1.7553 -2.6189 -2.2286 34 1 2.8519 -2.9371 -0.0831 35 1 0.1831 -4.1842 -0.1820 36 1 1.6032 -4.7659 -1.0839 37 1 0.2254 -7.8081 0.4692 38 1 2.0071 -0.4399 -3.3848 39 1 0.5577 0.1580 -2.5417 40 1 0.5723 2.3080 -1.4188 41 1 1.5700 4.5560 -1.2987 42 1 3.8033 4.9643 -2.2522 43 1 5.0423 3.1227 -3.3182 44 1 4.0485 0.8726 -3.4300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566009559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:13 Heat of formation + Delta-G solvation = -39.681602 kcal Electronic energy + Delta-G solvation = -22298.238758 eV Core-core repulsion = 19214.732788 eV Total energy + Delta-G solvation = -3083.505970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.13864 -38.28135 -34.80522 -34.23985 -32.35864 -31.10184 -30.67991 -29.53412 -27.04640 -26.66566 -24.23726 -23.07534 -22.42746 -21.70515 -21.04652 -18.75199 -16.82685 -16.46894 -15.91992 -15.45539 -15.23488 -15.10817 -14.76823 -14.44266 -14.05918 -13.75262 -13.43512 -13.14682 -12.79626 -12.64852 -12.52130 -12.16929 -12.04382 -11.83477 -11.54828 -11.34950 -11.30849 -11.18560 -10.91730 -10.82881 -10.81181 -10.66685 -10.45651 -10.08030 -9.74697 -9.24369 -9.13492 -8.94358 -8.63867 -8.50480 -7.41640 -6.06693 -4.08929 1.31056 1.34213 3.29927 3.37643 3.42994 3.72164 4.40509 4.64818 4.75430 4.88168 4.94231 5.01829 5.04393 5.20538 5.29924 5.37966 5.40007 5.46510 5.50364 5.59300 5.68451 5.69045 5.75887 5.93155 5.98007 6.01339 6.08615 6.13286 6.15453 6.28912 6.34388 6.40782 6.45040 6.48431 6.62338 6.68998 6.73352 6.96043 7.18423 7.36207 7.73950 8.07013 8.28698 8.52755 8.66569 9.01286 9.56748 11.04292 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035726 B = 0.003707 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.563414 B = 7551.324136 C = 7635.602550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.127 3.873 3 H 0.084 0.916 4 O -0.576 6.576 5 C -0.084 4.084 6 C -0.139 4.139 7 C 0.061 3.939 8 N -0.687 5.687 9 C 0.192 3.808 10 C -0.516 4.516 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.076 4.076 19 C -0.067 4.067 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.115 4.115 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.396 0.604 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.336 0.664 35 H 0.028 0.972 36 H -0.012 1.012 37 H 0.261 0.739 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 19.059 -7.187 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.067 3.933 3 H 0.101 0.899 4 O -0.391 6.391 5 C -0.085 4.085 6 C -0.197 4.197 7 C -0.069 4.069 8 N -0.321 5.321 9 C 0.066 3.934 10 C -0.554 4.554 11 H 0.083 0.917 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.212 1.212 18 C -0.113 4.113 19 C -0.067 4.067 20 C -0.137 4.137 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.255 0.745 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.155 0.845 35 H 0.046 0.954 36 H 0.006 0.994 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.849 19.643 -6.721 20.955 hybrid contribution 0.364 -1.544 -0.156 1.594 sum 3.213 18.098 -6.877 19.626 Atomic orbital electron populations 1.22675 0.97687 1.03261 1.01301 1.21570 0.91868 0.95164 0.84675 0.89865 1.86359 1.72498 1.36945 1.43251 1.21234 0.96742 0.95461 0.95045 1.21831 0.94210 1.01757 1.01855 1.22064 0.99900 0.91886 0.93034 1.60405 1.15056 1.18431 1.38197 1.19579 0.95470 0.82254 0.96103 1.21229 1.29885 0.96960 1.07346 0.91743 1.24986 0.95141 0.97666 0.96722 1.69971 1.34558 1.13737 1.35405 0.86436 0.78483 0.79722 0.82745 1.19558 1.21028 1.21155 1.20722 1.00604 0.91622 0.98392 1.19882 0.94545 0.95309 0.96933 1.21140 1.00258 0.92701 0.99634 1.21121 0.95825 0.96994 0.99864 1.21090 0.95344 0.98970 0.99404 1.21117 0.99764 0.93207 0.99802 1.21080 0.95230 0.96864 1.00090 0.91023 0.92577 0.92512 0.74473 0.91085 0.93558 0.92680 0.91226 0.95975 0.84512 0.95432 0.99407 0.92965 0.90929 0.90656 0.85983 0.86331 0.86502 0.86385 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 8.50 37.16 0.32 -2.28 16 2 C 0.13 1.87 2.52 -26.73 -0.07 1.80 16 3 H 0.08 1.22 5.82 -51.93 -0.30 0.91 16 4 O -0.58 -10.35 12.12 -35.23 -0.43 -10.78 16 5 C -0.08 -1.16 0.32 -154.51 -0.05 -1.21 16 6 C -0.14 -1.96 7.30 37.16 0.27 -1.68 16 7 C 0.06 1.01 4.22 -3.82 -0.02 0.99 16 8 N -0.69 -13.52 3.32 -115.05 -0.38 -13.90 16 9 C 0.19 4.80 5.44 -4.98 -0.03 4.77 16 10 C -0.52 -14.12 9.32 -34.44 -0.32 -14.44 16 11 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 14 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 C -0.08 -0.88 4.22 -27.88 -0.12 -1.00 16 19 C -0.07 -0.76 4.01 -104.62 -0.42 -1.18 16 20 C -0.12 -1.30 7.77 -39.58 -0.31 -1.60 16 21 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 22 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 23 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 24 C -0.11 -1.24 7.88 -39.58 -0.31 -1.55 16 25 H 0.07 1.09 6.29 -51.93 -0.33 0.76 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.64 5.51 -51.93 -0.29 0.36 16 28 H 0.40 7.59 6.16 45.56 0.28 7.87 16 29 H 0.07 1.12 5.95 -51.93 -0.31 0.81 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.74 6.17 -51.93 -0.32 0.42 16 32 H 0.07 1.16 6.21 -51.93 -0.32 0.84 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.34 6.60 6.69 -39.29 -0.26 6.34 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H -0.01 -0.32 8.14 -51.92 -0.42 -0.74 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 38 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 39 H 0.07 0.83 6.52 -51.93 -0.34 0.50 16 40 H 0.12 1.22 6.70 -52.49 -0.35 0.87 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 1.19 8.03 -52.49 -0.42 0.77 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -28.97 335.83 -8.68 -37.66 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.31 Total: 11.93 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -2.34 Total: -20.76 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.35 Total: -39.54 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.43 Total: -10.78 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.97 -8.68 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566009559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.026 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds