Wall clock time and date at job start Mon Mar 30 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47265 * 2 1 4 4 O 1.42901 * 109.47010 * 119.99981 * 2 1 3 5 5 C 1.53004 * 109.46976 * 239.99862 * 2 1 3 6 6 C 1.53003 * 109.47132 * 185.38370 * 5 2 1 7 7 C 1.53005 * 109.47103 * 305.38465 * 5 2 1 8 8 N 1.46907 * 109.46865 * 297.82077 * 7 5 2 9 9 C 1.46898 * 110.99732 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46970 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00302 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00015 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99926 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00029 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47095 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47492 * 119.99883 * 14 12 10 17 17 H 1.48502 * 109.46910 * 240.00032 * 14 12 10 18 18 C 1.52994 * 109.47196 * 65.38026 * 5 2 1 19 19 C 1.50703 * 109.46997 * 60.00145 * 18 5 2 20 20 C 1.38237 * 120.00194 * 269.72796 * 19 18 5 21 21 C 1.38229 * 119.99981 * 179.76416 * 20 19 18 22 22 C 1.38237 * 120.00354 * 0.48522 * 21 20 19 23 23 C 1.38232 * 119.99530 * 359.78678 * 22 21 20 24 24 C 1.38230 * 120.00450 * 359.96193 * 23 22 21 25 25 H 1.09002 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46770 * 299.99960 * 1 2 3 27 27 H 1.08999 * 109.46966 * 59.99916 * 1 2 3 28 28 H 0.96695 * 114.00001 * 53.12485 * 4 2 1 29 29 H 1.09003 * 109.47018 * 60.00046 * 6 5 2 30 30 H 1.08996 * 109.47063 * 179.97438 * 6 5 2 31 31 H 1.08994 * 109.46836 * 300.00345 * 6 5 2 32 32 H 1.09000 * 109.47149 * 57.81622 * 7 5 2 33 33 H 1.09002 * 109.47292 * 177.82085 * 7 5 2 34 34 H 1.00907 * 110.99776 * 303.95119 * 8 7 5 35 35 H 1.08993 * 109.47269 * 299.99575 * 9 8 7 36 36 H 1.09008 * 109.47071 * 59.99849 * 9 8 7 37 37 H 0.97001 * 119.99967 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.47328 * 179.97438 * 18 5 2 39 39 H 1.08997 * 109.47521 * 300.00383 * 18 5 2 40 40 H 1.08001 * 119.99752 * 359.97438 * 20 19 18 41 41 H 1.08006 * 119.99806 * 180.25094 * 21 20 19 42 42 H 1.07998 * 120.00106 * 179.76695 * 22 21 20 43 43 H 1.08002 * 119.99808 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00472 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 6 3.5640 -0.8396 -1.1835 7 6 1.4224 -2.1195 -1.3187 8 7 1.8456 -2.9003 -0.1486 9 6 1.2710 -4.2518 -0.1818 10 6 1.7267 -5.0214 1.0310 11 1 2.3784 -4.5535 1.7541 12 6 1.3117 -6.3229 1.2178 13 7 0.5177 -6.8926 0.3376 14 14 1.8760 -7.2766 2.7216 15 1 2.7569 -6.4162 3.5516 16 1 0.6931 -7.6895 3.5187 17 1 2.6273 -8.4826 2.2896 18 6 1.6434 0.0737 -2.4948 19 6 2.2517 1.4509 -2.4264 20 6 1.5537 2.4861 -1.8330 21 6 2.1137 3.7481 -1.7660 22 6 3.3674 3.9774 -2.3013 23 6 4.0630 2.9435 -2.8997 24 6 3.5053 1.6802 -2.9621 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6377 -1.5593 1.2876 29 1 3.8465 -1.4061 -0.2961 30 1 3.9273 -1.3538 -2.0732 31 1 4.0039 0.1564 -1.1339 32 1 0.3356 -2.0366 -1.3265 33 1 1.7553 -2.6189 -2.2286 34 1 2.8519 -2.9371 -0.0831 35 1 0.1831 -4.1842 -0.1820 36 1 1.6032 -4.7659 -1.0839 37 1 0.2254 -7.8081 0.4692 38 1 2.0071 -0.4399 -3.3848 39 1 0.5577 0.1580 -2.5417 40 1 0.5723 2.3080 -1.4188 41 1 1.5700 4.5560 -1.2987 42 1 3.8033 4.9643 -2.2522 43 1 5.0423 3.1227 -3.3182 44 1 4.0485 0.8726 -3.4300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566009559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:12 Heat of formation + Delta-G solvation = -56.490869 kcal Electronic energy + Delta-G solvation = -22298.967663 eV Core-core repulsion = 19214.732788 eV Total energy + Delta-G solvation = -3084.234875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15693 -39.31151 -36.45074 -35.56687 -34.23653 -31.91237 -31.78649 -30.67717 -28.86709 -27.68792 -25.77821 -24.23180 -23.47681 -23.20200 -22.08946 -20.01243 -18.49598 -17.67111 -17.15225 -16.85430 -16.45085 -16.19470 -16.01906 -15.88352 -15.25090 -15.14952 -14.54544 -14.35528 -14.09089 -14.01693 -13.59161 -13.53114 -13.18034 -13.11013 -13.03701 -12.72568 -12.68862 -12.54586 -12.50180 -12.12929 -12.03810 -11.98341 -11.69949 -11.61807 -11.27180 -10.97955 -10.66418 -10.44783 -9.71225 -9.46598 -9.11397 -8.21464 -6.31446 0.52832 0.57766 1.41844 1.43124 1.56536 2.41023 2.92804 3.12887 3.43167 3.76275 3.78570 3.98361 4.09169 4.15776 4.22901 4.26376 4.36271 4.42225 4.48712 4.53760 4.62281 4.72221 4.75984 4.84508 4.89923 4.95483 4.98683 5.05748 5.12570 5.14676 5.22389 5.25653 5.30221 5.37173 5.50309 5.52999 5.64235 5.66251 5.70529 5.81995 6.03340 6.20760 6.42451 6.70558 6.89151 7.22658 7.39741 8.90095 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035726 B = 0.003707 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.563414 B = 7551.324136 C = 7635.602550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.124 3.876 3 H 0.091 0.909 4 O -0.592 6.592 5 C -0.072 4.072 6 C -0.135 4.135 7 C 0.062 3.938 8 N -0.676 5.676 9 C 0.209 3.791 10 C -0.531 4.531 11 H 0.066 0.934 12 C 0.003 3.997 13 N -0.933 5.933 14 Si 0.969 3.031 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.069 4.069 19 C -0.080 4.080 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.134 4.134 23 C -0.128 4.128 24 C -0.126 4.126 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.389 0.611 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.019 0.981 34 H 0.338 0.662 35 H 0.003 0.997 36 H -0.039 1.039 37 H 0.264 0.736 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 20.648 -7.044 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.065 3.935 3 H 0.109 0.891 4 O -0.406 6.406 5 C -0.072 4.072 6 C -0.193 4.193 7 C -0.068 4.068 8 N -0.309 5.309 9 C 0.081 3.919 10 C -0.569 4.569 11 H 0.084 0.916 12 C -0.195 4.195 13 N -0.574 5.574 14 Si 0.794 3.206 15 H -0.187 1.187 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.107 4.107 19 C -0.080 4.080 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.246 0.754 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.157 0.843 35 H 0.021 0.979 36 H -0.022 1.022 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.545 21.264 -6.586 22.541 hybrid contribution 0.162 -1.932 -0.256 1.956 sum 3.707 19.331 -6.843 20.839 Atomic orbital electron populations 1.22611 0.96725 1.02341 1.02715 1.21737 0.92686 0.95167 0.83939 0.89090 1.86342 1.72930 1.36460 1.44874 1.21093 0.96385 0.93715 0.96055 1.21786 0.94300 1.01942 1.01239 1.22140 1.00086 0.93045 0.91489 1.60299 1.14936 1.15686 1.40019 1.19204 0.93992 0.84438 0.94242 1.21584 1.29815 0.97557 1.07994 0.91593 1.25886 0.95136 0.98779 0.99743 1.70089 1.35720 1.14226 1.37343 0.85338 0.78121 0.78198 0.78957 1.18716 1.20572 1.20592 1.20637 1.01159 0.91819 0.97090 1.19854 0.95052 0.95011 0.98047 1.21304 1.00661 0.93077 0.99807 1.21417 0.96191 0.97218 0.99725 1.21428 0.95221 0.99945 0.98587 1.21406 1.00626 0.92933 0.99623 1.21245 0.95242 0.97615 1.00322 0.93010 0.92253 0.90082 0.75372 0.93068 0.92778 0.91902 0.91338 0.96266 0.84281 0.97863 1.02165 0.92740 0.90442 0.89936 0.85400 0.84507 0.84371 0.84583 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.87 8.50 71.98 0.61 -4.26 16 2 C 0.12 3.53 2.52 30.60 0.08 3.61 16 3 H 0.09 2.51 5.82 -2.39 -0.01 2.50 16 4 O -0.59 -21.19 12.12 -148.98 -1.81 -23.00 16 5 C -0.07 -1.93 0.32 -52.18 -0.02 -1.95 16 6 C -0.14 -3.70 7.30 71.98 0.53 -3.17 16 7 C 0.06 2.06 4.22 86.30 0.36 2.42 16 8 N -0.68 -27.19 3.32 -517.91 -1.72 -28.91 16 9 C 0.21 10.76 5.44 85.56 0.47 11.23 16 10 C -0.53 -29.53 9.32 25.60 0.24 -29.29 16 11 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 12 C 0.00 0.16 5.46 84.66 0.46 0.62 16 13 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 14 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 15 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 18 C -0.07 -1.52 4.22 29.85 0.13 -1.39 16 19 C -0.08 -1.66 4.01 -19.86 -0.08 -1.74 16 20 C -0.13 -2.56 7.77 22.27 0.17 -2.39 16 21 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 24 C -0.13 -2.50 7.88 22.27 0.18 -2.33 16 25 H 0.05 1.56 6.29 -2.39 -0.02 1.55 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.69 5.51 -2.39 -0.01 1.68 16 28 H 0.39 15.08 6.16 -74.06 -0.46 14.63 16 29 H 0.05 1.60 5.95 -2.39 -0.01 1.58 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.62 6.17 -2.39 -0.01 1.60 16 32 H 0.07 2.31 6.21 -2.39 -0.01 2.29 16 33 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.34 13.52 6.69 -89.69 -0.60 12.92 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 36 H -0.04 -2.21 8.14 -2.38 -0.02 -2.23 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 39 H 0.08 1.68 6.52 -2.39 -0.02 1.66 16 40 H 0.13 2.26 6.70 -2.91 -0.02 2.25 16 41 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.12 2.27 8.03 -2.91 -0.02 2.25 16 Total: -1.00 -62.10 335.83 2.52 -59.58 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.06 Total: 36.33 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 3.79 Total: -34.68 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -1.44 Total: -84.37 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -1.81 Total: -23.00 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -62.10 2.52 -59.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566009559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.087 kcal (2) G-P(sol) polarization free energy of solvation -62.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds