Wall clock time and date at job start Mon Mar 30 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.47042 * 2 1 4 4 H 1.08996 * 109.46902 * 54.38410 * 3 2 1 5 5 C 1.50696 * 109.46591 * 174.38896 * 3 2 1 6 6 H 1.08005 * 119.99876 * 120.00259 * 5 3 2 7 7 C 1.37873 * 120.00141 * 299.99317 * 5 3 2 8 8 N 1.31517 * 120.00321 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00340 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47306 * 59.99615 * 9 7 5 11 11 H 1.48495 * 109.47593 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46883 * 300.00112 * 9 7 5 13 13 N 1.46901 * 109.46902 * 294.38461 * 3 2 1 14 14 C 1.46902 * 110.99799 * 152.89653 * 13 3 2 15 15 C 1.52994 * 109.46847 * 175.11219 * 14 13 3 16 16 O 1.42898 * 109.47586 * 64.99810 * 15 14 13 17 17 C 1.35900 * 117.00259 * 179.97438 * 16 15 14 18 18 C 1.38738 * 120.05725 * 270.27757 * 17 16 15 19 19 C 1.50697 * 120.02905 * 0.02562 * 18 17 16 20 20 C 1.38143 * 119.93902 * 180.25321 * 18 17 16 21 21 C 1.38262 * 120.05914 * 359.45019 * 20 18 17 22 22 C 1.38263 * 120.11272 * 0.29885 * 21 20 18 23 23 C 1.38150 * 120.05623 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.02878 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47144 * 179.65822 * 1 2 3 26 26 H 1.09006 * 109.46981 * 299.65625 * 1 2 3 27 27 H 1.08999 * 109.46962 * 59.65601 * 1 2 3 28 28 H 1.09002 * 109.47016 * 239.99873 * 2 1 3 29 29 H 1.09003 * 109.46787 * 119.99681 * 2 1 3 30 30 H 0.96995 * 120.00901 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00000 * 28.94234 * 13 3 2 32 32 H 1.08992 * 109.46673 * 55.11047 * 14 13 3 33 33 H 1.08994 * 109.46928 * 295.11038 * 14 13 3 34 34 H 1.09001 * 109.47510 * 304.99704 * 15 14 13 35 35 H 1.09006 * 109.47283 * 185.00399 * 15 14 13 36 36 H 1.09005 * 109.47052 * 270.25279 * 19 18 17 37 37 H 1.08999 * 109.47193 * 30.24731 * 19 18 17 38 38 H 1.08999 * 109.47113 * 150.25243 * 19 18 17 39 39 H 1.07999 * 119.96842 * 179.72509 * 20 18 17 40 40 H 1.08003 * 119.94736 * 180.27636 * 21 20 18 41 41 H 1.08001 * 119.97609 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.46763 * 89.99832 * 24 23 22 43 43 H 1.08999 * 109.46918 * 210.00109 * 24 23 22 44 44 H 1.08997 * 109.47123 * 329.99659 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5969 1.9845 0.8354 5 6 3.5406 1.4447 0.1389 6 1 4.1537 1.8866 -0.6327 7 6 4.1308 0.8828 1.2511 8 7 3.3843 0.3445 2.1905 9 14 5.9908 0.8861 1.4237 10 1 6.4855 2.2863 1.4238 11 1 6.3709 0.2262 2.6985 12 1 6.5948 0.1479 0.2854 13 7 1.6642 2.0948 -1.2615 14 6 1.5350 3.5474 -1.0849 15 6 1.2635 4.2036 -2.4401 16 8 -0.0047 3.7686 -2.9346 17 6 -0.4003 4.2624 -4.1372 18 6 -1.1303 5.4407 -4.1985 19 6 -1.4849 6.1749 -2.9312 20 6 -1.5358 5.9377 -5.4220 21 6 -1.2050 5.2681 -6.5856 22 6 -0.4732 4.0964 -6.5275 23 6 -0.0701 3.5922 -5.3062 24 6 0.7280 2.3154 -5.2437 25 1 -0.3633 -1.0276 -0.0061 26 1 -0.3633 0.5085 0.8931 27 1 -0.3633 0.5192 -0.8869 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7994 -0.0505 2.9732 31 1 0.8142 1.6988 -1.6340 32 1 2.4591 3.9461 -0.6667 33 1 0.7083 3.7588 -0.4067 34 1 2.0451 3.9193 -3.1446 35 1 1.2559 5.2875 -2.3239 36 1 -2.4416 5.8112 -2.5561 37 1 -0.7118 6.0019 -2.1826 38 1 -1.5579 7.2426 -3.1381 39 1 -2.1078 6.8525 -5.4700 40 1 -1.5191 5.6606 -7.5414 41 1 -0.2157 3.5754 -7.4378 42 1 1.7916 2.5490 -5.2926 43 1 0.5123 1.7975 -4.3091 44 1 0.4574 1.6762 -6.0840 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570812732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:29 Heat of formation + Delta-G solvation = -31.668927 kcal Electronic energy + Delta-G solvation = -21810.028412 eV Core-core repulsion = 18726.869897 eV Total energy + Delta-G solvation = -3083.158515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14627 -37.45150 -36.04841 -33.57659 -32.73582 -31.46995 -30.84078 -28.38554 -26.81707 -26.62896 -25.84479 -22.87064 -21.94744 -21.13050 -20.86837 -19.49809 -17.61592 -16.48969 -16.17676 -15.49354 -15.11258 -14.83869 -14.59474 -14.09045 -13.77979 -13.49201 -13.31688 -13.04274 -12.98786 -12.72635 -12.64253 -12.14511 -12.03308 -11.87845 -11.64276 -11.56972 -11.21469 -11.18615 -11.05929 -10.93070 -10.72053 -10.60911 -9.92095 -9.67631 -9.61023 -9.46886 -9.04354 -8.62065 -8.45171 -8.30930 -7.16896 -5.93525 -3.97955 1.20977 1.29383 3.35280 3.39698 3.42829 3.46307 4.05951 4.46780 4.75257 4.79065 4.91851 5.14965 5.19775 5.35746 5.37969 5.48282 5.51998 5.59931 5.61479 5.70822 5.74463 5.79525 5.85600 5.95480 6.09107 6.22382 6.24767 6.35272 6.36256 6.40429 6.45591 6.46971 6.51960 6.61589 6.81790 6.91496 7.12747 7.23707 7.53646 7.77558 7.83226 7.95430 8.35020 8.44978 8.82826 9.09772 9.66956 11.11657 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.003815 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.054061 B = 7337.466977 C = 7396.853798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.684 5.684 14 C 0.071 3.929 15 C 0.072 3.928 16 O -0.330 6.330 17 C 0.102 3.898 18 C -0.104 4.104 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.095 4.095 24 C -0.114 4.114 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.259 0.741 31 H 0.324 0.676 32 H 0.090 0.910 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 9.320 -13.852 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.316 5.316 14 C -0.059 4.059 15 C -0.002 4.002 16 O -0.248 6.248 17 C 0.058 3.942 18 C -0.104 4.104 19 C -0.167 4.167 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.096 4.096 24 C -0.170 4.170 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.570 9.135 -13.760 18.608 hybrid contribution 0.240 0.189 0.497 0.583 sum -8.331 9.325 -13.263 18.228 Atomic orbital electron populations 1.21882 0.99567 0.99487 0.99831 1.21764 0.91259 1.00365 1.02960 1.19145 0.95321 0.90067 0.84440 0.98075 1.21188 0.91325 1.36540 1.04160 0.92164 1.24961 0.98008 0.95687 0.95890 1.69864 1.34732 1.39482 1.09566 0.86619 0.85884 0.78081 0.77106 1.20481 1.21504 1.20344 1.60705 1.37773 1.01177 1.31933 1.21860 1.00278 0.91514 0.92223 1.22979 0.83215 0.97044 0.96980 1.86007 1.37383 1.69083 1.32306 1.18425 0.97744 0.92614 0.85411 1.20247 0.99529 0.94715 0.95938 1.20699 1.02418 0.98873 0.94712 1.20867 1.00965 1.00310 0.91590 1.21075 0.99299 0.95831 0.98121 1.20932 0.99268 0.96583 0.96842 1.20337 0.98868 0.98033 0.92349 1.20732 0.99075 0.93661 1.03579 0.94504 0.93956 0.94407 0.94134 0.88323 0.93065 0.85776 0.89203 0.95876 0.92167 0.93577 0.91052 0.91135 0.91860 0.86070 0.86153 0.85948 0.91075 0.89981 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.76 37.16 0.36 -2.65 16 2 C -0.12 -2.98 5.35 -26.72 -0.14 -3.13 16 3 C 0.22 5.43 2.02 -68.86 -0.14 5.29 16 4 H 0.00 0.04 7.82 -51.93 -0.41 -0.36 16 5 C -0.49 -13.54 8.65 -34.44 -0.30 -13.83 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.53 11.29 55.43 0.63 -24.91 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -14.54 6.28 -107.96 -0.68 -15.21 16 14 C 0.07 1.33 5.86 -3.83 -0.02 1.31 16 15 C 0.07 1.13 6.03 37.15 0.22 1.35 16 16 O -0.33 -5.26 7.93 -19.42 -0.15 -5.42 16 17 C 0.10 1.47 5.67 -39.21 -0.22 1.25 16 18 C -0.10 -1.32 5.89 -104.47 -0.62 -1.93 16 19 C -0.11 -1.22 9.79 36.00 0.35 -0.87 16 20 C -0.12 -1.29 9.70 -39.61 -0.38 -1.68 16 21 C -0.13 -1.29 10.04 -39.56 -0.40 -1.69 16 22 C -0.12 -1.33 9.70 -39.60 -0.38 -1.72 16 23 C -0.10 -1.27 5.89 -104.47 -0.62 -1.89 16 24 C -0.11 -1.46 9.79 36.01 0.35 -1.11 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.70 6.46 -51.93 -0.34 0.37 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.32 6.60 6.17 -39.29 -0.24 6.36 16 32 H 0.09 1.76 8.00 -51.93 -0.42 1.35 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.64 7.23 -51.93 -0.38 0.27 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.85 6.30 -51.93 -0.33 0.52 16 38 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.20 7.53 -51.93 -0.39 0.81 16 44 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -28.79 354.70 -9.32 -38.11 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.41 Total: 5.54 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.02 Total: -19.87 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: -0.05 Total: -40.12 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.15 Total: -5.42 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.79 -9.32 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570812732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.437 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds