Wall clock time and date at job start Mon Mar 30 2020 01:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47228 * 2 1 4 4 H 1.08999 * 109.46820 * 305.64475 * 3 2 1 5 5 C 1.50701 * 109.46732 * 185.64291 * 3 2 1 6 6 H 1.07996 * 119.99298 * 239.99618 * 5 3 2 7 7 C 1.37869 * 120.00138 * 59.72540 * 5 3 2 8 8 N 1.31512 * 120.00126 * 0.27450 * 7 5 3 9 9 Si 1.86804 * 119.99799 * 180.26986 * 7 5 3 10 10 H 1.48496 * 109.47147 * 0.02562 * 9 7 5 11 11 H 1.48511 * 109.46630 * 120.00215 * 9 7 5 12 12 H 1.48498 * 109.47259 * 239.99812 * 9 7 5 13 13 N 1.46895 * 109.46868 * 65.64290 * 3 2 1 14 14 C 1.46897 * 110.99801 * 205.21935 * 13 3 2 15 15 C 1.52997 * 109.47328 * 185.19792 * 14 13 3 16 16 H 1.09001 * 109.47445 * 305.00418 * 15 14 13 17 17 O 1.42908 * 109.47074 * 64.99968 * 15 14 13 18 18 C 1.53004 * 109.47336 * 184.99695 * 15 14 13 19 19 H 1.08998 * 109.47255 * 300.00229 * 18 15 14 20 20 C 1.53002 * 109.46845 * 60.00691 * 18 15 14 21 21 C 1.50705 * 109.46950 * 180.02562 * 18 15 14 22 22 C 1.38235 * 119.99874 * 299.72689 * 21 18 15 23 23 C 1.38235 * 120.00021 * 179.81345 * 22 21 18 24 24 C 1.38236 * 119.99870 * 0.39853 * 23 22 21 25 25 C 1.38241 * 120.00086 * 359.85343 * 24 23 22 26 26 C 1.38236 * 119.99852 * 359.96277 * 25 24 23 27 27 H 1.08998 * 109.47328 * 54.40997 * 1 2 3 28 28 H 1.08999 * 109.47311 * 174.41274 * 1 2 3 29 29 H 1.08999 * 109.46549 * 294.41023 * 1 2 3 30 30 H 1.09007 * 109.46911 * 239.99905 * 2 1 3 31 31 H 1.09000 * 109.47119 * 120.00344 * 2 1 3 32 32 H 0.97005 * 120.00124 * 180.02562 * 8 7 5 33 33 H 1.00899 * 111.00002 * 329.16948 * 13 3 2 34 34 H 1.08998 * 109.47176 * 305.20072 * 14 13 3 35 35 H 1.09000 * 109.47248 * 65.19854 * 14 13 3 36 36 H 0.96703 * 113.99512 * 60.00177 * 17 15 14 37 37 H 1.08998 * 109.47571 * 59.99732 * 20 18 15 38 38 H 1.08995 * 109.46990 * 179.97438 * 20 18 15 39 39 H 1.09001 * 109.46862 * 299.99865 * 20 18 15 40 40 H 1.08003 * 120.00254 * 0.02562 * 22 21 18 41 41 H 1.08002 * 120.00614 * 180.23209 * 23 22 21 42 42 H 1.07997 * 120.00355 * 179.83617 * 24 23 22 43 43 H 1.07994 * 120.00428 * 179.97438 * 25 24 23 44 44 H 1.07991 * 120.00179 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9846 -0.8351 5 6 3.5406 1.4447 -0.1397 6 1 4.1540 1.8864 0.6316 7 6 4.1304 0.8778 -1.2495 8 7 3.3834 0.3401 -2.1888 9 14 5.9908 0.8739 -1.4190 10 1 6.5970 1.5352 -0.2356 11 1 6.4768 -0.5267 -1.5060 12 1 6.3773 1.6093 -2.6498 13 7 1.6648 2.0945 1.2617 14 6 1.5791 3.5516 1.0961 15 6 1.3146 4.2046 2.4542 16 1 0.4232 3.7648 2.9014 17 8 2.4354 3.9870 3.3137 18 6 1.1017 5.7078 2.2646 19 1 1.9932 6.1475 1.8175 20 6 -0.0984 5.9408 1.3445 21 6 0.8418 6.3510 3.6025 22 6 -0.2460 5.9572 4.3591 23 6 -0.4822 6.5444 5.5880 24 6 0.3647 7.5314 6.0566 25 6 1.4496 7.9289 5.2976 26 6 1.6880 7.3390 4.0704 27 1 -0.3634 0.5981 -0.8357 28 1 -0.3634 -1.0228 -0.1001 29 1 -0.3632 0.4247 0.9358 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.7984 -0.0591 -2.9694 33 1 0.7987 1.7197 1.6187 34 1 2.5181 3.9268 0.6892 35 1 0.7650 3.7924 0.4125 36 1 3.2653 4.3527 2.9780 37 1 -0.9899 5.5010 1.7916 38 1 -0.2504 7.0116 1.2097 39 1 0.0900 5.4755 0.3769 40 1 -0.9094 5.1882 3.9916 41 1 -1.3299 6.2341 6.1809 42 1 0.1787 7.9921 7.0155 43 1 2.1111 8.7002 5.6635 44 1 2.5352 7.6498 3.4773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580343399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:23 Heat of formation + Delta-G solvation = -41.672942 kcal Electronic energy + Delta-G solvation = -21748.631742 eV Core-core repulsion = 18665.039421 eV Total energy + Delta-G solvation = -3083.592321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.70300 -37.63258 -35.76669 -33.82848 -32.34988 -31.14056 -30.91119 -29.52254 -27.27577 -25.72661 -24.06467 -22.84260 -22.54082 -21.33956 -20.16313 -19.39223 -17.02420 -16.40754 -16.13215 -15.54380 -14.98905 -14.74064 -14.62005 -14.18558 -14.15766 -13.61424 -13.42211 -13.32600 -12.79376 -12.61521 -12.42914 -12.12515 -12.02047 -11.83948 -11.49960 -11.24868 -11.11418 -10.93768 -10.87613 -10.82640 -10.59389 -10.34226 -10.00373 -9.94257 -9.63806 -9.27546 -9.02148 -8.91605 -8.59453 -8.33227 -7.12944 -5.95245 -3.99109 1.37886 1.40427 3.31776 3.39990 3.45262 3.78414 4.45425 4.55865 4.69796 4.88898 4.96473 4.99147 5.08875 5.25542 5.33323 5.41686 5.48940 5.52916 5.56183 5.67822 5.82750 5.91059 5.96993 6.02314 6.08715 6.10560 6.17000 6.18033 6.37763 6.42711 6.47215 6.49553 6.57832 6.70627 6.85748 7.00845 7.09240 7.20957 7.51050 7.79814 7.93963 8.11495 8.34222 8.42890 8.79505 9.09689 9.65962 11.10055 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.003984 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.283631 B = 7026.082532 C = 7699.272551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H -0.001 1.001 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.677 5.677 14 C 0.036 3.964 15 C 0.122 3.878 16 H 0.088 0.912 17 O -0.545 6.545 18 C -0.089 4.089 19 H 0.081 0.919 20 C -0.145 4.145 21 C -0.054 4.054 22 C -0.112 4.112 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.117 4.117 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.258 0.742 33 H 0.315 0.685 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.370 0.630 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 13.033 10.485 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.308 5.308 14 C -0.095 4.095 15 C 0.062 3.938 16 H 0.106 0.894 17 O -0.349 6.349 18 C -0.108 4.108 19 H 0.099 0.901 20 C -0.202 4.202 21 C -0.054 4.054 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.135 4.135 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.216 0.784 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.404 12.648 10.904 18.267 hybrid contribution 0.544 0.304 -1.080 1.247 sum -6.859 12.952 9.824 17.644 Atomic orbital electron populations 1.21877 0.99663 0.99696 0.99456 1.21766 0.91187 1.00416 1.03077 1.19161 0.95486 0.89983 0.84236 0.98345 1.21263 0.91321 1.36126 1.04157 0.92004 1.24966 0.98055 0.95718 0.95914 1.69884 1.34536 1.39616 1.09713 0.86508 0.85892 0.77633 0.77765 1.19774 1.21148 1.21315 1.60570 1.36047 1.01511 1.32659 1.22598 1.00806 0.91376 0.94680 1.21929 0.90007 0.90627 0.91202 0.89395 1.86569 1.18549 1.81897 1.47854 1.20978 0.99934 0.97315 0.92557 0.90107 1.21869 0.97064 1.01689 0.99572 1.19743 0.94527 0.95383 0.95769 1.20971 0.97615 0.99757 0.94680 1.21097 0.99560 0.96930 0.96130 1.21074 0.95785 0.98294 0.99801 1.21087 0.97724 1.00080 0.94913 1.21049 0.99273 0.96864 0.96358 0.93975 0.94397 0.94633 0.88276 0.94015 0.93201 0.86777 0.90652 0.95739 0.78410 0.92472 0.92597 0.91329 0.86338 0.86392 0.86542 0.86430 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.65 37.16 0.36 -2.54 16 2 C -0.13 -2.98 5.36 -26.73 -0.14 -3.13 16 3 C 0.22 5.40 2.02 -68.87 -0.14 5.26 16 4 H 0.00 -0.03 7.85 -51.93 -0.41 -0.44 16 5 C -0.49 -13.45 8.55 -34.44 -0.29 -13.75 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.49 11.28 55.43 0.63 -24.86 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.68 -14.25 6.22 -107.96 -0.67 -14.93 16 14 C 0.04 0.64 4.88 -3.83 -0.02 0.62 16 15 C 0.12 1.81 2.59 -26.73 -0.07 1.75 16 16 H 0.09 1.32 7.41 -51.93 -0.38 0.94 16 17 O -0.54 -9.02 12.91 -35.23 -0.45 -9.48 16 18 C -0.09 -1.09 2.34 -91.77 -0.21 -1.30 16 19 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 20 C -0.14 -1.62 8.66 37.16 0.32 -1.30 16 21 C -0.05 -0.66 4.43 -104.62 -0.46 -1.13 16 22 C -0.11 -1.34 8.71 -39.58 -0.34 -1.68 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 26 C -0.12 -1.35 9.67 -39.58 -0.38 -1.73 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.62 6.65 -51.93 -0.35 0.27 16 30 H 0.10 2.64 5.93 -51.93 -0.31 2.33 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.32 6.18 6.65 -39.29 -0.26 5.92 16 34 H 0.08 1.46 7.92 -51.93 -0.41 1.05 16 35 H 0.02 0.42 6.17 -51.93 -0.32 0.10 16 36 H 0.37 5.29 9.05 45.56 0.41 5.70 16 37 H 0.06 0.61 7.38 -51.93 -0.38 0.22 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.81 6.32 -51.93 -0.33 0.48 16 40 H 0.12 1.31 7.11 -52.48 -0.37 0.94 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.12 1.19 7.94 -52.49 -0.42 0.78 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -29.93 350.66 -9.36 -39.29 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.44 Total: 10.93 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.68 Total: -22.67 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.05 Total: -39.79 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.45 Total: -9.48 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.93 -9.36 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580343399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.387 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds