Wall clock time and date at job start Mon Mar 30 2020 02:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46674 * 2 1 4 4 C 1.50694 * 109.47185 * 120.00305 * 2 1 3 5 5 C 1.38236 * 119.99844 * 59.72406 * 4 2 1 6 6 C 1.38236 * 120.00022 * 179.78401 * 5 4 2 7 7 C 1.38240 * 119.99885 * 0.44737 * 6 5 4 8 8 C 1.38237 * 119.99827 * 359.80737 * 7 6 5 9 9 C 1.38232 * 119.99953 * 359.97438 * 8 7 6 10 10 C 1.52996 * 109.46567 * 240.00486 * 2 1 3 11 11 H 1.09003 * 109.47377 * 299.99969 * 10 2 1 12 12 O 1.42901 * 109.47002 * 179.97438 * 10 2 1 13 13 C 1.53004 * 109.47522 * 59.99965 * 10 2 1 14 14 N 1.46895 * 109.47035 * 184.99817 * 13 10 2 15 15 C 1.46906 * 110.99789 * 179.97438 * 14 13 10 16 16 C 1.53002 * 109.47053 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.46891 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46946 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00275 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99908 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99697 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99899 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47158 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47233 * 119.99727 * 22 20 18 25 25 H 1.48498 * 109.47163 * 239.99655 * 22 20 18 26 26 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46729 * 299.99537 * 1 2 3 28 28 H 1.08997 * 109.47706 * 59.99161 * 1 2 3 29 29 H 1.08000 * 120.00293 * 0.02562 * 5 4 2 30 30 H 1.08002 * 120.00372 * 180.27925 * 6 5 4 31 31 H 1.07998 * 120.00263 * 179.83797 * 7 6 5 32 32 H 1.07999 * 120.00289 * 180.02562 * 8 7 6 33 33 H 1.07997 * 120.00177 * 179.97438 * 9 8 7 34 34 H 0.96703 * 113.99992 * 300.00273 * 12 10 2 35 35 H 1.08996 * 109.46863 * 64.99659 * 13 10 2 36 36 H 1.09002 * 109.46661 * 304.99836 * 13 10 2 37 37 H 1.00899 * 111.00672 * 56.04786 * 14 13 10 38 38 H 1.08992 * 109.47459 * 299.99826 * 15 14 13 39 39 H 1.09004 * 109.47040 * 59.99976 * 15 14 13 40 40 H 1.09001 * 109.47142 * 300.00160 * 16 15 14 41 41 H 1.09004 * 109.47006 * 60.00213 * 16 15 14 42 42 H 1.09001 * 109.47372 * 300.00036 * 17 16 15 43 43 H 1.09004 * 109.47108 * 60.00292 * 17 16 15 44 44 H 0.97007 * 119.99539 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6937 -2.0322 1.4519 6 6 2.1581 -2.6853 2.5783 7 6 2.9537 -2.0138 3.4878 8 6 3.2880 -0.6905 3.2689 9 6 2.8272 -0.0388 2.1403 10 6 2.0399 -0.7212 -1.2493 11 1 1.6765 -1.7488 -1.2494 12 8 3.4689 -0.7207 -1.2497 13 6 1.5298 0.0002 -2.4985 14 7 1.9184 -0.7585 -3.6949 15 6 1.4439 -0.0944 -4.9164 16 6 1.8673 -0.9118 -6.1386 17 6 1.3726 -0.2205 -7.4107 18 6 1.7891 -1.0260 -8.6144 19 1 2.3501 -1.9397 -8.4850 20 6 1.4539 -0.5963 -9.8810 21 7 0.7703 0.5161 -10.0385 22 14 1.9695 -1.5950 -11.3730 23 1 2.7228 -2.7953 -10.9290 24 1 0.7620 -2.0186 -12.1265 25 1 2.8340 -0.7648 -12.2496 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.0694 -2.5559 0.7430 30 1 1.8973 -3.7193 2.7491 31 1 3.3144 -2.5232 4.3692 32 1 3.9098 -0.1659 3.9792 33 1 3.0880 0.9952 1.9694 34 1 3.8619 0.1629 -1.2498 35 1 1.9645 0.9987 -2.5444 36 1 0.4435 0.0784 -2.4548 37 1 1.5816 -1.7083 -3.6461 38 1 0.3571 -0.0172 -4.8893 39 1 1.8776 0.9037 -4.9793 40 1 2.9543 -0.9886 -6.1655 41 1 1.4340 -1.9100 -6.0759 42 1 0.2856 -0.1441 -7.3835 43 1 1.8056 0.7778 -7.4735 44 1 0.5342 0.8182 -10.9295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582415313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:17 Heat of formation + Delta-G solvation = -73.077894 kcal Electronic energy + Delta-G solvation = -20626.825236 eV Core-core repulsion = 17541.871094 eV Total energy + Delta-G solvation = -3084.954142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67681 -38.87868 -37.15654 -35.31109 -34.92150 -33.08312 -31.74787 -30.69800 -28.98241 -27.12015 -25.26310 -23.98968 -23.60951 -22.69120 -21.88374 -21.03513 -18.49752 -18.03541 -17.55567 -16.70233 -16.54598 -16.50608 -16.00067 -15.72225 -15.46791 -15.19167 -14.74558 -14.43792 -14.30406 -14.13992 -13.74746 -13.63983 -13.38187 -13.23778 -13.04834 -12.85230 -12.55937 -12.47084 -12.41129 -12.23971 -11.94631 -11.79228 -11.55734 -11.48218 -11.42433 -11.18399 -10.69393 -10.56489 -9.75807 -9.51129 -9.28838 -8.21028 -6.31831 0.51781 0.56170 1.39581 1.40036 1.53802 2.40615 2.88384 3.11960 3.16086 3.57583 3.68489 3.89152 4.07381 4.19259 4.20564 4.23168 4.29001 4.32701 4.36526 4.47587 4.51983 4.65056 4.69041 4.72583 4.73956 4.93324 4.94732 4.98836 5.10241 5.13073 5.20570 5.22910 5.23491 5.34315 5.51702 5.63413 5.68031 5.74392 5.77690 5.85306 6.06076 6.18690 6.27134 6.45780 6.85071 6.94163 7.37318 8.91067 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.043868 B = 0.002354 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.123660 B =11892.592454 C =12096.631159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 H 0.091 0.909 4 C -0.071 4.071 5 C -0.129 4.129 6 C -0.130 4.130 7 C -0.137 4.137 8 C -0.128 4.128 9 C -0.128 4.128 10 C 0.129 3.871 11 H 0.088 0.912 12 O -0.563 6.563 13 C 0.025 3.975 14 N -0.688 5.688 15 C 0.073 3.927 16 C -0.093 4.093 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.058 0.942 20 C -0.003 4.003 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.277 1.277 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.381 0.619 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.341 0.659 38 H 0.024 0.976 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.049 0.951 42 H -0.008 1.008 43 H -0.008 1.008 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -1.588 28.891 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 H 0.110 0.890 4 C -0.071 4.071 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.146 4.146 9 C -0.146 4.146 10 C 0.069 3.931 11 H 0.106 0.894 12 O -0.369 6.369 13 C -0.104 4.104 14 N -0.319 5.319 15 C -0.056 4.056 16 C -0.131 4.131 17 C -0.013 4.013 18 C -0.581 4.581 19 H 0.076 0.924 20 C -0.200 4.200 21 N -0.574 5.574 22 Si 0.791 3.209 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.203 1.203 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.229 0.771 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.159 0.841 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.686 -1.839 28.737 28.846 hybrid contribution -0.846 0.185 -1.039 1.353 sum 0.840 -1.654 27.698 27.760 Atomic orbital electron populations 1.21884 0.93027 1.02646 1.02690 1.20818 0.97110 0.99737 0.91861 0.89032 1.19792 0.97337 0.94329 0.95689 1.21154 1.00760 0.94728 0.98048 1.21398 0.98156 1.00619 0.94666 1.21425 0.98780 0.95208 1.00091 1.21420 1.00026 0.95237 0.97883 1.21287 0.98034 1.00604 0.94669 1.21844 0.81048 0.99335 0.90838 0.89379 1.86594 1.19071 1.34418 1.96819 1.22840 0.99139 0.98294 0.90146 1.60387 1.64485 1.05829 1.01176 1.21826 0.96585 0.97877 0.89278 1.21374 1.00078 0.98271 0.93370 1.18976 0.94668 0.94905 0.92703 1.21730 1.35000 1.08870 0.92467 0.92384 1.26008 0.95101 0.96306 1.02609 1.70103 1.40223 1.23608 1.23437 0.85377 0.78180 0.78795 0.78561 1.18715 1.20204 1.20278 0.92225 0.91761 0.91426 0.86056 0.84905 0.84567 0.84463 0.84995 0.77085 0.90553 0.93229 0.84101 0.95786 0.92047 0.93183 0.93251 0.98968 0.99007 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.66 71.98 0.62 -1.38 16 2 C -0.08 -1.16 2.34 -11.54 -0.03 -1.18 16 3 H 0.09 1.20 7.88 -2.39 -0.02 1.18 16 4 C -0.07 -1.24 4.43 -19.87 -0.09 -1.32 16 5 C -0.13 -2.31 8.71 22.27 0.19 -2.12 16 6 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 7 C -0.14 -2.09 10.05 22.27 0.22 -1.87 16 8 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 9 C -0.13 -2.06 9.67 22.27 0.22 -1.85 16 10 C 0.13 2.47 2.55 30.59 0.08 2.54 16 11 H 0.09 1.81 7.40 -2.39 -0.02 1.79 16 12 O -0.56 -12.78 12.91 -148.98 -1.92 -14.70 16 13 C 0.03 0.54 5.11 86.31 0.44 0.98 16 14 N -0.69 -19.61 6.45 -513.88 -3.31 -22.92 16 15 C 0.07 2.54 5.68 86.30 0.49 3.03 16 16 C -0.09 -3.96 5.41 30.59 0.17 -3.80 16 17 C 0.03 1.36 4.97 29.85 0.15 1.51 16 18 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 19 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 20 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 21 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 22 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H 0.06 0.82 7.37 -2.39 -0.02 0.80 16 27 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.07 0.91 6.32 -2.39 -0.02 0.90 16 29 H 0.12 1.99 7.10 -2.91 -0.02 1.97 16 30 H 0.13 1.70 8.06 -2.91 -0.02 1.67 16 31 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.13 1.65 7.95 -2.91 -0.02 1.63 16 34 H 0.38 6.43 9.04 -74.06 -0.67 5.76 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 0.99 6.17 -2.39 -0.01 0.97 16 37 H 0.34 9.30 8.73 -89.69 -0.78 8.52 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 2.17 8.14 -2.38 -0.02 2.16 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 44 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -68.72 359.08 0.20 -68.52 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.48 Total: 19.63 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 3.61 Total: -40.33 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -3.03 Total: -80.21 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.92 Total: -14.70 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -68.72 0.20 -68.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582415313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.560 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds