Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00161 * 179.78869 * 5 4 2 7 7 C 1.38232 * 119.99682 * 0.44033 * 6 5 4 8 8 C 1.38237 * 120.00245 * 359.80853 * 7 6 5 9 9 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 10 10 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 11 11 H 1.09001 * 109.47630 * 185.00216 * 10 2 1 12 12 O 1.42907 * 109.47171 * 305.00201 * 10 2 1 13 13 C 1.53004 * 109.47236 * 65.00086 * 10 2 1 14 14 N 1.46901 * 109.47251 * 180.02562 * 13 10 2 15 15 C 1.46904 * 110.99756 * 180.02562 * 14 13 10 16 16 C 1.53000 * 109.46670 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46999 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47548 * 179.97438 * 17 16 15 19 19 H 1.08013 * 119.99646 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00504 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99860 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00240 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47544 * 89.99509 * 22 20 18 24 24 H 1.48505 * 109.46976 * 210.00122 * 22 20 18 25 25 H 1.48504 * 109.46869 * 329.99133 * 22 20 18 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 30 30 H 1.08001 * 120.00058 * 180.27375 * 6 5 4 31 31 H 1.07998 * 119.99940 * 179.83577 * 7 6 5 32 32 H 1.08002 * 120.00238 * 179.97438 * 8 7 6 33 33 H 1.07991 * 120.00120 * 359.97438 * 9 4 2 34 34 H 0.96707 * 113.99746 * 60.00107 * 12 10 2 35 35 H 1.09001 * 109.46917 * 300.00567 * 13 10 2 36 36 H 1.09004 * 109.46741 * 59.99889 * 13 10 2 37 37 H 1.00898 * 111.00315 * 56.04456 * 14 13 10 38 38 H 1.08996 * 109.46840 * 299.99325 * 15 14 13 39 39 H 1.08996 * 109.47271 * 59.99446 * 15 14 13 40 40 H 1.09004 * 109.47213 * 299.99203 * 16 15 14 41 41 H 1.08996 * 109.47764 * 59.99701 * 16 15 14 42 42 H 1.09001 * 109.46943 * 300.00217 * 17 16 15 43 43 H 1.09006 * 109.46958 * 59.99387 * 17 16 15 44 44 H 0.96993 * 120.00439 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6937 -2.0322 1.4521 6 6 2.1580 -2.6852 2.5786 7 6 2.9535 -2.0136 3.4880 8 6 3.2879 -0.6903 3.2690 9 6 2.8271 -0.0386 2.1403 10 6 2.0400 -0.7213 -1.2492 11 1 3.1263 -0.7996 -1.2056 12 8 1.4701 -2.0304 -1.3094 13 6 1.6352 0.0689 -2.4953 14 7 2.1244 -0.6240 -3.6948 15 6 1.7539 0.1080 -4.9134 16 6 2.2788 -0.6429 -6.1387 17 6 1.8925 0.1191 -7.4080 18 6 2.4100 -0.6201 -8.6149 19 1 2.9600 -1.5411 -8.4892 20 6 2.1824 -0.1202 -9.8796 21 7 1.5132 1.0016 -10.0326 22 14 2.8234 -1.0368 -11.3756 23 1 1.7962 -2.0023 -11.8422 24 1 3.1205 -0.0672 -12.4605 25 1 4.0633 -1.7695 -11.0135 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.0688 -2.5556 0.7436 30 1 1.8971 -3.7191 2.7495 31 1 3.3141 -2.5229 4.3694 32 1 3.9091 -0.1655 3.9798 33 1 3.0883 0.9952 1.9692 34 1 0.5039 -2.0373 -1.3504 35 1 0.5489 0.1472 -2.5389 36 1 2.0699 1.0674 -2.4494 37 1 1.7865 -1.5742 -3.7266 38 1 0.6685 0.1872 -4.9738 39 1 2.1900 1.1065 -4.8842 40 1 3.3643 -0.7225 -6.0786 41 1 1.8424 -1.6412 -6.1677 42 1 0.8070 0.1984 -7.4679 43 1 2.3286 1.1177 -7.3792 44 1 1.3528 1.3531 -10.9222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582415316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = -52.634355 kcal Electronic energy + Delta-G solvation = -20685.898987 eV Core-core repulsion = 17601.831343 eV Total energy + Delta-G solvation = -3084.067644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10128 -38.17588 -35.82355 -33.88504 -33.37952 -31.35127 -31.05646 -29.79160 -28.03617 -25.92254 -24.23341 -22.80327 -22.34798 -21.70172 -20.38499 -19.95199 -17.24689 -16.70666 -16.30777 -16.11641 -15.69868 -15.27491 -14.67761 -14.64646 -14.47471 -14.19325 -13.58113 -13.49152 -13.39992 -12.87860 -12.64882 -12.38001 -12.25056 -12.00847 -11.74712 -11.58105 -11.40546 -11.32738 -11.15354 -10.88579 -10.76056 -10.54943 -10.51934 -9.99824 -9.66888 -9.30842 -9.08181 -9.03613 -8.83898 -8.32196 -8.13345 -5.97366 -3.99231 1.16269 1.24032 3.34118 3.40022 3.44287 3.58531 4.02350 4.40449 4.43048 4.49775 4.58145 4.80596 4.84090 4.91661 4.99826 5.02791 5.11933 5.20256 5.34078 5.38199 5.38424 5.49182 5.61372 5.67706 5.75087 5.82291 5.83777 5.88544 5.92749 6.08952 6.28512 6.33843 6.34874 6.46825 6.74425 6.78304 6.83317 7.16633 7.34015 7.45838 7.68586 7.71468 7.86192 8.03216 8.46836 9.07992 9.64622 11.14138 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.043756 B = 0.002353 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.759195 B =11897.107505 C =12098.220600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.087 0.913 4 C -0.074 4.074 5 C -0.099 4.099 6 C -0.124 4.124 7 C -0.126 4.126 8 C -0.125 4.125 9 C -0.119 4.119 10 C 0.118 3.882 11 H 0.107 0.893 12 O -0.552 6.552 13 C 0.026 3.974 14 N -0.687 5.687 15 C 0.059 3.941 16 C -0.107 4.107 17 C 0.022 3.978 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.367 0.633 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.344 0.656 38 H 0.022 0.978 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -2.755 27.799 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.105 0.895 4 C -0.074 4.074 5 C -0.117 4.117 6 C -0.142 4.142 7 C -0.144 4.144 8 C -0.143 4.143 9 C -0.137 4.137 10 C 0.059 3.941 11 H 0.125 0.875 12 O -0.358 6.358 13 C -0.104 4.104 14 N -0.319 5.319 15 C -0.069 4.069 16 C -0.145 4.145 17 C -0.016 4.016 18 C -0.556 4.556 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.215 0.785 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.162 0.838 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.546 -2.521 27.713 27.832 hybrid contribution -1.163 -0.297 -0.913 1.508 sum -1.709 -2.817 26.800 27.001 Atomic orbital electron populations 1.21919 0.94131 1.02273 1.02604 1.20837 0.96545 0.99889 0.93136 0.89457 1.19730 0.97762 0.94464 0.95482 1.21237 0.99649 0.94069 0.96716 1.21186 0.98371 0.99847 0.94829 1.21137 0.98881 0.94923 0.99495 1.21094 1.00383 0.95045 0.97735 1.21085 0.98227 0.99815 0.94549 1.22002 0.99055 0.82166 0.90872 0.87504 1.86650 1.24791 1.28024 1.96303 1.22676 0.97635 0.98809 0.91266 1.60443 1.64014 1.06138 1.01311 1.22131 0.97303 0.98108 0.89358 1.21620 1.00436 0.98552 0.93885 1.19068 0.96530 0.95458 0.90510 1.21267 1.34833 1.08373 0.91144 0.92650 1.25037 0.95366 0.95059 0.99144 1.69964 1.40920 1.20206 1.22594 0.86585 0.79296 0.79534 0.82545 1.20708 1.21254 1.19839 0.91688 0.92209 0.92041 0.85082 0.86303 0.86465 0.86346 0.86300 0.78537 0.95097 0.90439 0.83768 0.95952 0.91622 0.92542 0.93640 0.96862 0.96610 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.33 37.16 0.31 -0.76 16 2 C -0.08 -0.70 2.47 -91.77 -0.23 -0.93 16 3 H 0.09 0.68 7.88 -51.93 -0.41 0.27 16 4 C -0.07 -0.69 4.78 -104.62 -0.50 -1.19 16 5 C -0.10 -0.93 8.43 -39.58 -0.33 -1.26 16 6 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 7 C -0.13 -1.07 10.05 -39.58 -0.40 -1.46 16 8 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 9 C -0.12 -1.06 9.67 -39.58 -0.38 -1.44 16 10 C 0.12 1.18 2.96 -26.73 -0.08 1.10 16 11 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 12 O -0.55 -5.55 10.03 -35.23 -0.35 -5.90 16 13 C 0.03 0.30 5.15 -3.82 -0.02 0.28 16 14 N -0.69 -10.17 6.50 -113.77 -0.74 -10.91 16 15 C 0.06 1.04 5.69 -3.82 -0.02 1.02 16 16 C -0.11 -2.27 5.41 -26.73 -0.14 -2.42 16 17 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 18 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 19 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 20 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 22 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 27 H 0.06 0.38 5.95 -51.93 -0.31 0.07 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.13 1.15 5.74 -52.48 -0.30 0.85 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.12 0.88 7.95 -52.49 -0.42 0.46 16 34 H 0.37 2.68 7.13 45.56 0.32 3.01 16 35 H 0.03 0.33 6.56 -51.93 -0.34 -0.01 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.34 4.99 8.12 -39.29 -0.32 4.67 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -31.68 352.64 -9.93 -41.62 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.73 Total: 2.90 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -3.14 Total: -23.40 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.00 Total: -37.54 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.35 Total: -5.90 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.68 -9.93 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582415316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.018 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds