Wall clock time and date at job start Mon Mar 30 2020 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47018 * 2 1 4 4 C 1.52991 * 109.47460 * 120.00246 * 2 1 3 5 5 O 1.42903 * 109.47443 * 174.90456 * 4 2 1 6 6 C 1.53001 * 109.46973 * 240.00564 * 2 1 3 7 7 H 1.09007 * 109.46695 * 180.91185 * 6 2 1 8 8 C 1.52993 * 109.47117 * 300.90831 * 6 2 1 9 9 N 1.46900 * 109.47516 * 294.17769 * 8 6 2 10 10 C 1.46898 * 111.00489 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47084 * 180.02562 * 10 9 8 12 12 H 1.07991 * 120.00440 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99899 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00259 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99767 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47088 * 90.00140 * 15 13 11 17 17 H 1.48502 * 109.46589 * 210.00127 * 15 13 11 18 18 H 1.48495 * 109.46977 * 329.99695 * 15 13 11 19 19 C 1.50700 * 109.47663 * 60.91123 * 6 2 1 20 20 C 1.38233 * 119.99895 * 285.54758 * 19 6 2 21 21 C 1.38229 * 120.00098 * 179.80527 * 20 19 6 22 22 C 1.38236 * 120.00101 * 0.39423 * 21 20 19 23 23 C 1.38240 * 119.99922 * 359.85653 * 22 21 20 24 24 C 1.38236 * 119.99745 * 359.95195 * 23 22 21 25 25 H 1.08998 * 109.46941 * 295.14065 * 1 2 3 26 26 H 1.09002 * 109.47354 * 55.14323 * 1 2 3 27 27 H 1.08996 * 109.47037 * 175.14133 * 1 2 3 28 28 H 1.09003 * 109.47063 * 185.18918 * 3 2 1 29 29 H 1.08998 * 109.47336 * 305.19469 * 3 2 1 30 30 H 1.09003 * 109.46933 * 65.19641 * 3 2 1 31 31 H 1.09005 * 109.47656 * 294.90571 * 4 2 1 32 32 H 1.09001 * 109.47028 * 54.90319 * 4 2 1 33 33 H 0.96701 * 114.00318 * 179.97438 * 5 4 2 34 34 H 1.09004 * 109.47371 * 54.17538 * 8 6 2 35 35 H 1.09001 * 109.47297 * 174.17707 * 8 6 2 36 36 H 1.00907 * 110.99909 * 303.95416 * 9 8 6 37 37 H 1.08992 * 109.47025 * 300.00303 * 10 9 8 38 38 H 1.09001 * 109.46985 * 60.00096 * 10 9 8 39 39 H 0.97001 * 120.00293 * 180.02562 * 14 13 11 40 40 H 1.07998 * 119.99870 * 359.97438 * 20 19 6 41 41 H 1.08005 * 120.00168 * 180.22238 * 21 20 19 42 42 H 1.08000 * 120.00325 * 179.83409 * 22 21 20 43 43 H 1.08001 * 120.00174 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.99896 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 8 3.4640 -0.8258 1.1908 6 6 2.0399 -0.7211 -1.2493 7 1 3.1299 -0.7353 -1.2411 8 6 1.5113 -2.1568 -1.2609 9 7 2.0944 -2.9025 -0.1375 10 6 1.6078 -4.2884 -0.1164 11 6 2.2257 -5.0200 1.0472 12 1 2.9115 -4.5069 1.7050 13 6 1.9162 -6.3447 1.2714 14 7 2.4550 -6.9831 2.2872 15 14 0.7316 -7.2328 0.1323 16 1 1.4898 -7.8562 -0.9820 17 1 0.0112 -8.2865 0.8914 18 1 -0.2481 -6.2618 -0.4177 19 6 1.5562 0.0022 -2.4797 20 6 0.2342 -0.1047 -2.8693 21 6 -0.2105 0.5620 -3.9956 22 6 0.6686 1.3292 -4.7369 23 6 1.9919 1.4319 -4.3502 24 6 2.4356 0.7684 -3.2216 25 1 -0.3633 0.4366 0.9303 26 1 -0.3634 0.5873 -0.8433 27 1 -0.3633 -1.0239 -0.0870 28 1 3.1260 1.4440 -0.0929 29 1 1.6027 1.9826 -0.8398 30 1 1.7546 1.9288 0.9329 31 1 1.7532 -0.1575 2.1369 32 1 1.6041 -1.7192 1.2959 33 1 3.8571 -1.2731 1.9527 34 1 0.4256 -2.1451 -1.1647 35 1 1.7878 -2.6382 -2.1990 36 1 3.1025 -2.8732 -0.1685 37 1 0.5229 -4.2910 -0.0121 38 1 1.8846 -4.7848 -1.0465 39 1 2.2375 -7.9152 2.4447 40 1 -0.4518 -0.7069 -2.2922 41 1 -1.2442 0.4814 -4.2980 42 1 0.3218 1.8479 -5.6184 43 1 2.6788 2.0309 -4.9296 44 1 3.4695 0.8483 -2.9198 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591756863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:24 Heat of formation + Delta-G solvation = -27.351770 kcal Electronic energy + Delta-G solvation = -22575.730390 eV Core-core repulsion = 19492.759081 eV Total energy + Delta-G solvation = -3082.971309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16255 -37.82959 -35.24861 -34.46752 -32.35315 -31.35888 -30.94618 -28.69089 -27.13118 -26.04116 -25.33419 -22.94320 -22.20208 -21.06892 -21.01188 -18.37507 -16.84189 -16.72882 -16.45585 -15.73745 -15.27095 -14.96867 -14.45439 -14.28149 -13.83961 -13.71012 -13.40460 -13.23601 -12.89071 -12.59584 -12.54949 -12.26805 -12.06420 -11.87285 -11.78718 -11.53257 -11.41957 -11.12101 -10.85639 -10.76710 -10.59163 -10.29261 -10.20140 -9.85081 -9.70832 -9.39450 -9.22657 -8.85014 -8.60675 -8.54187 -7.19832 -6.07865 -4.05509 1.41929 1.43839 3.27281 3.35031 3.37463 3.82914 4.40634 4.72378 4.73884 4.90723 4.99982 5.08802 5.13678 5.23685 5.26068 5.33450 5.44836 5.55935 5.65041 5.74755 5.80276 5.87437 5.89641 6.02925 6.06126 6.06862 6.09886 6.19064 6.28309 6.31701 6.43271 6.49733 6.53544 6.55408 6.63742 6.78810 6.84729 6.97049 7.05853 7.09738 7.60947 7.88989 8.29002 8.38500 8.63237 8.99720 9.54900 11.05295 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.005027 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.078085 B = 5568.425296 C = 6371.458899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.038 4.038 3 C -0.136 4.136 4 C 0.071 3.929 5 O -0.573 6.573 6 C -0.035 4.035 7 H 0.086 0.914 8 C 0.059 3.941 9 N -0.667 5.667 10 C 0.159 3.841 11 C -0.513 4.513 12 H 0.079 0.921 13 C 0.069 3.931 14 N -0.901 5.901 15 Si 0.877 3.123 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.267 1.267 19 C -0.060 4.060 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.123 4.123 24 C -0.116 4.116 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.015 0.985 32 H 0.112 0.888 33 H 0.375 0.625 34 H 0.068 0.932 35 H 0.019 0.981 36 H 0.342 0.658 37 H 0.024 0.976 38 H -0.022 1.022 39 H 0.263 0.737 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 17.204 -9.716 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.038 4.038 3 C -0.193 4.193 4 C -0.006 4.006 5 O -0.378 6.378 6 C -0.053 4.053 7 H 0.104 0.896 8 C -0.071 4.071 9 N -0.298 5.298 10 C 0.031 3.969 11 C -0.551 4.551 12 H 0.097 0.903 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.704 3.296 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.060 4.060 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.130 0.870 33 H 0.221 0.779 34 H 0.087 0.913 35 H 0.037 0.963 36 H 0.161 0.839 37 H 0.042 0.958 38 H -0.004 1.004 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.983 17.547 -9.736 20.459 hybrid contribution -0.094 -1.213 -0.824 1.469 sum -4.077 16.334 -10.560 19.873 Atomic orbital electron populations 1.22114 0.94843 1.02412 1.01506 1.20314 0.94739 0.94453 0.94333 1.21849 1.01341 0.95586 1.00561 1.22731 0.81597 1.02685 0.93620 1.86268 1.20869 1.82002 1.48685 1.20198 1.01015 0.93671 0.90449 0.89601 1.22084 0.99743 0.92300 0.92957 1.60693 1.13135 1.15005 1.40966 1.20049 0.96213 0.84875 0.95764 1.21032 1.27474 0.95331 1.11285 0.90288 1.24898 0.95877 0.97364 0.95150 1.69891 1.44128 1.10848 1.29095 0.86840 0.81877 0.79751 0.81098 1.20430 1.21246 1.19224 1.19961 0.93533 0.96509 0.96020 1.21215 0.95763 0.99768 0.96681 1.21124 0.99484 0.97853 0.95632 1.21061 0.93886 1.00076 1.00009 1.21088 0.95860 0.99985 0.97126 1.21086 0.99554 0.97550 0.95252 0.93027 0.92033 0.91588 0.92385 0.93383 0.93479 0.96654 0.87017 0.77904 0.91336 0.96282 0.83931 0.95784 1.00443 0.92683 0.85679 0.86470 0.86664 0.86530 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 6.91 37.16 0.26 -1.69 16 2 C -0.04 -0.53 0.41 -154.51 -0.06 -0.59 16 3 C -0.14 -1.75 7.86 37.16 0.29 -1.46 16 4 C 0.07 1.09 5.04 37.15 0.19 1.28 16 5 O -0.57 -8.75 11.41 -35.23 -0.40 -9.15 16 6 C -0.03 -0.49 1.59 -91.77 -0.15 -0.64 16 7 H 0.09 1.33 7.33 -51.92 -0.38 0.95 16 8 C 0.06 0.97 4.29 -3.83 -0.02 0.95 16 9 N -0.67 -12.84 2.72 -115.07 -0.31 -13.15 16 10 C 0.16 3.72 4.51 -4.98 -0.02 3.70 16 11 C -0.51 -14.12 9.87 -34.44 -0.34 -14.46 16 12 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 15 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 19 C -0.06 -0.78 3.57 -104.62 -0.37 -1.15 16 20 C -0.12 -1.44 6.98 -39.59 -0.28 -1.72 16 21 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 22 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 23 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.12 -1.42 9.34 -39.58 -0.37 -1.79 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 27 H 0.07 0.90 5.89 -51.93 -0.31 0.60 16 28 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 29 H 0.05 0.60 7.21 -51.93 -0.37 0.22 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.11 2.01 5.50 -51.93 -0.29 1.72 16 33 H 0.37 4.93 9.12 45.56 0.42 5.35 16 34 H 0.07 1.11 4.93 -51.93 -0.26 0.85 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.34 6.71 7.99 -39.29 -0.31 6.39 16 37 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 38 H -0.02 -0.53 7.57 -51.93 -0.39 -0.92 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.13 1.51 5.49 -52.49 -0.29 1.22 16 41 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.12 1.35 8.00 -52.49 -0.42 0.93 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -29.58 335.23 -7.95 -37.53 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.23 Total: 10.39 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.16 Total: -20.99 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.46 Total: -39.59 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.40 Total: -9.15 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.58 -7.95 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.178 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds