Wall clock time and date at job start Mon Mar 30 2020 01:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46840 * 2 1 4 4 H 1.08996 * 109.47554 * 55.57290 * 3 2 1 5 5 O 1.42892 * 109.47139 * 295.56682 * 3 2 1 6 6 C 1.42903 * 114.00171 * 151.17485 * 5 3 2 7 7 C 1.52994 * 109.47781 * 176.69320 * 6 5 3 8 8 N 1.46502 * 109.47323 * 64.99711 * 7 6 5 9 9 C 1.36935 * 120.00187 * 270.00901 * 8 7 6 10 10 H 1.07995 * 120.00568 * 145.27916 * 9 8 7 11 11 C 1.38815 * 119.99648 * 325.27271 * 9 8 7 12 12 N 1.31616 * 120.00443 * 337.49194 * 11 9 8 13 13 Si 1.86807 * 119.99877 * 157.49163 * 11 9 8 14 14 H 1.48503 * 109.47015 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47061 * 119.99964 * 13 11 9 16 16 H 1.48497 * 109.46955 * 240.00006 * 13 11 9 17 17 C 1.46500 * 119.99535 * 89.99974 * 8 7 6 18 18 C 1.53001 * 109.46858 * 87.78632 * 17 8 7 19 19 C 1.50704 * 109.46609 * 175.57094 * 3 2 1 20 20 C 1.38231 * 120.00192 * 84.72666 * 19 3 2 21 21 C 1.38231 * 120.00017 * 179.78491 * 20 19 3 22 22 C 1.38236 * 120.00077 * 0.44399 * 21 20 19 23 23 C 1.38228 * 119.99745 * 359.80945 * 22 21 20 24 24 C 1.38231 * 120.00095 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46857 * 305.52866 * 1 2 3 26 26 H 1.09004 * 109.47677 * 65.52627 * 1 2 3 27 27 H 1.08999 * 109.47549 * 185.53407 * 1 2 3 28 28 H 1.09001 * 109.46824 * 240.00390 * 2 1 3 29 29 H 1.08999 * 109.47060 * 120.00002 * 2 1 3 30 30 H 1.09007 * 109.46840 * 56.69083 * 6 5 3 31 31 H 1.09001 * 109.46768 * 296.69480 * 6 5 3 32 32 H 1.08992 * 109.47665 * 185.00542 * 7 6 5 33 33 H 1.09008 * 109.46660 * 304.99911 * 7 6 5 34 34 H 0.97000 * 120.00366 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.46652 * 207.77975 * 17 8 7 36 36 H 1.08990 * 109.47441 * 327.78475 * 17 8 7 37 37 H 1.08996 * 109.47077 * 299.99884 * 18 17 8 38 38 H 1.09003 * 109.47003 * 59.99615 * 18 17 8 39 39 H 1.08994 * 109.47366 * 179.97438 * 18 17 8 40 40 H 1.08004 * 119.99880 * 359.97438 * 20 19 3 41 41 H 1.08010 * 120.00166 * 180.26996 * 21 20 19 42 42 H 1.08001 * 119.99535 * 179.83087 * 22 21 20 43 43 H 1.08006 * 119.99675 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.99980 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6133 1.9788 0.8476 5 8 1.6505 2.0854 -1.2153 6 6 1.4713 3.4979 -1.0941 7 6 1.1382 4.0894 -2.4652 8 7 -0.1552 3.5722 -2.9191 9 6 -0.2110 2.4200 -3.6570 10 1 -1.0419 1.7408 -3.5358 11 6 0.8003 2.1251 -4.5610 12 7 1.5539 3.0903 -5.0435 13 14 1.0917 0.3582 -5.0928 14 1 0.1168 -0.5310 -4.4115 15 1 0.9171 0.2487 -6.5634 16 1 2.4725 -0.0475 -4.7267 17 6 -1.3887 4.2876 -2.5833 18 6 -1.6713 5.3460 -3.6513 19 6 3.5430 1.4439 0.1097 20 6 4.3190 1.3038 -1.0256 21 6 5.6977 1.3095 -0.9254 22 6 6.3003 1.4461 0.3111 23 6 5.5242 1.5809 1.4470 24 6 4.1456 1.5796 1.3463 25 1 -0.3633 0.5972 0.8364 26 1 -0.3634 0.4257 -0.9353 27 1 -0.3634 -1.0228 0.0991 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.3889 3.9495 -0.7168 31 1 0.6544 3.7024 -0.4020 32 1 1.0891 5.1756 -2.3902 33 1 1.9125 3.8092 -3.1795 34 1 2.2603 2.8843 -5.6754 35 1 -2.2184 3.5818 -2.5427 36 1 -1.2755 4.7714 -1.6132 37 1 -0.8416 6.0517 -3.6920 38 1 -1.7844 4.8620 -4.6214 39 1 -2.5892 5.8780 -3.4018 40 1 3.8482 1.1930 -1.9913 41 1 6.3041 1.2045 -1.8130 42 1 7.3775 1.4478 0.3896 43 1 5.9951 1.6871 2.4132 44 1 3.5393 1.6854 2.2338 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593007473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:17 Heat of formation + Delta-G solvation = -10.420910 kcal Electronic energy + Delta-G solvation = -22651.728079 eV Core-core repulsion = 19569.490948 eV Total energy + Delta-G solvation = -3082.237132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.35405 -37.27929 -35.66120 -33.16593 -31.64033 -30.75840 -30.63168 -29.59066 -27.43937 -25.50068 -23.74853 -22.47378 -22.02493 -21.79970 -20.28333 -19.69781 -16.88473 -16.59380 -16.07413 -15.31374 -14.67791 -14.48385 -14.24464 -13.94420 -13.77975 -13.57413 -13.24002 -13.15095 -12.86619 -12.60872 -12.14483 -12.03695 -11.68477 -11.51939 -11.21613 -11.03522 -10.93796 -10.79891 -10.65974 -10.62673 -10.52838 -10.25446 -10.16540 -9.84484 -9.68531 -9.58482 -8.77637 -8.69617 -8.49984 -8.32104 -6.45571 -5.61263 -3.13130 1.54306 1.63199 3.47548 3.55490 3.58902 3.99627 4.43545 4.65203 4.96443 5.09802 5.16287 5.35408 5.44568 5.46438 5.51003 5.59749 5.67559 5.73425 5.85931 5.97128 6.10562 6.16831 6.17560 6.23252 6.27691 6.30107 6.30923 6.44506 6.54075 6.57070 6.63410 6.67981 6.75466 6.76649 6.78835 6.86168 6.94206 7.03388 7.23449 7.31155 7.79050 7.97160 8.15627 8.67909 9.34254 9.99939 10.54588 11.40297 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.006327 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.955548 B = 4424.254104 C = 4769.277607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.121 3.879 4 H 0.057 0.943 5 O -0.331 6.331 6 C 0.050 3.950 7 C 0.141 3.859 8 N -0.578 5.578 9 C -0.230 4.230 10 H 0.056 0.944 11 C 0.016 3.984 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.278 1.278 15 H -0.297 1.297 16 H -0.289 1.289 17 C 0.142 3.858 18 C -0.163 4.163 19 C -0.103 4.103 20 C -0.087 4.087 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.119 4.119 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.025 0.975 32 H 0.036 0.964 33 H 0.108 0.892 34 H 0.250 0.750 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.028 0.972 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 -2.052 12.136 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C 0.062 3.938 4 H 0.075 0.925 5 O -0.249 6.249 6 C -0.029 4.029 7 C 0.014 3.986 8 N -0.299 5.299 9 C -0.360 4.360 10 H 0.074 0.926 11 C -0.183 4.183 12 N -0.538 5.538 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.225 1.225 16 H -0.216 1.216 17 C 0.016 3.984 18 C -0.223 4.223 19 C -0.103 4.103 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.137 4.137 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.536 -2.162 11.839 12.861 hybrid contribution 0.467 -0.662 0.001 0.810 sum 5.003 -2.824 11.840 13.160 Atomic orbital electron populations 1.21708 0.94985 1.00614 1.03214 1.21505 0.96742 0.94516 1.01882 1.20961 0.88367 0.94647 0.89808 0.92541 1.88285 1.87849 1.20144 1.28582 1.23426 0.96228 0.81603 1.01639 1.21020 0.91852 0.93248 0.92432 1.43761 0.99756 1.26302 1.60042 1.18888 1.07876 0.95286 1.13929 0.92623 1.24895 1.00616 0.96639 0.96153 1.69957 1.22800 1.29982 1.31037 0.86416 0.77986 0.86253 0.77219 1.20289 1.22457 1.21578 1.20853 0.90374 0.93004 0.94214 1.22300 0.98411 0.99639 1.01911 1.20670 0.97200 0.99179 0.93278 1.21189 0.93199 0.96810 0.99327 1.21200 0.95040 1.00509 0.97432 1.21084 0.99393 1.01157 0.92910 1.21012 0.93829 1.01650 0.98196 1.20978 0.94722 1.01068 0.96907 0.93606 0.90433 0.93493 0.91218 0.91886 0.95923 0.95641 0.94622 0.87494 0.94025 0.93989 0.95425 0.93974 0.92675 0.95288 0.84986 0.86320 0.86636 0.86599 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.74 37.16 0.36 -1.94 16 2 C -0.11 -1.72 5.63 -26.73 -0.15 -1.87 16 3 C 0.12 2.05 2.32 -27.88 -0.06 1.99 16 4 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 5 O -0.33 -6.91 8.24 -35.23 -0.29 -7.20 16 6 C 0.05 1.02 6.05 37.15 0.22 1.25 16 7 C 0.14 3.30 5.73 -4.04 -0.02 3.28 16 8 N -0.58 -14.18 2.43 -173.25 -0.42 -14.60 16 9 C -0.23 -6.22 8.97 -15.06 -0.14 -6.36 16 10 H 0.06 1.54 7.92 -52.49 -0.42 1.12 16 11 C 0.02 0.43 4.96 -17.43 -0.09 0.35 16 12 N -0.89 -25.69 11.34 55.49 0.63 -25.06 16 13 Si 0.89 22.22 29.61 -169.99 -5.03 17.19 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 C 0.14 3.01 6.39 -4.04 -0.03 2.98 16 18 C -0.16 -3.28 10.24 37.16 0.38 -2.90 16 19 C -0.10 -1.67 4.91 -104.62 -0.51 -2.18 16 20 C -0.09 -1.50 9.35 -39.59 -0.37 -1.87 16 21 C -0.12 -1.84 10.05 -39.58 -0.40 -2.23 16 22 C -0.13 -1.65 10.05 -39.59 -0.40 -2.05 16 23 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 24 C -0.12 -1.64 9.68 -39.59 -0.38 -2.02 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.46 7.96 -51.93 -0.41 1.05 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.11 2.88 5.35 -51.92 -0.28 2.60 16 34 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.04 0.88 8.02 -51.93 -0.42 0.46 16 36 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.13 2.60 7.64 -52.48 -0.40 2.20 16 41 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -29.07 361.61 -9.44 -38.51 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.80 Total: 1.34 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.98 Total: -15.61 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.21 Total: -39.66 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.29 Total: -7.20 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.07 -9.44 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593007473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.086 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds