Wall clock time and date at job start Mon Mar 30 2020 02:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47323 * 2 1 4 4 N 1.46497 * 109.46786 * 120.00329 * 2 1 3 5 5 C 1.46505 * 120.00068 * 120.54176 * 4 2 1 6 6 C 1.50699 * 109.47153 * 270.00062 * 5 4 2 7 7 H 1.08003 * 119.99887 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99846 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00137 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99869 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47292 * 89.99559 * 10 8 6 12 12 H 1.48506 * 109.47023 * 209.99824 * 10 8 6 13 13 H 1.48504 * 109.47206 * 329.99726 * 10 8 6 14 14 C 1.34782 * 120.00164 * 300.53887 * 4 2 1 15 15 O 1.21280 * 119.99915 * 5.61936 * 14 4 2 16 16 C 1.50698 * 119.99838 * 185.61874 * 14 4 2 17 17 H 1.08998 * 109.47270 * 40.48083 * 16 14 4 18 18 C 1.55816 * 108.92023 * 279.46210 * 16 14 4 19 19 C 1.53442 * 108.97315 * 239.51710 * 18 16 14 20 20 H 1.08998 * 110.70904 * 178.13061 * 19 18 16 21 21 C 1.52186 * 107.80199 * 56.88144 * 19 18 16 22 22 C 1.33223 * 113.68681 * 301.83687 * 21 19 18 23 23 C 1.52222 * 113.66089 * 358.43629 * 22 21 19 24 24 H 1.09000 * 110.72226 * 181.31062 * 23 22 21 25 25 C 1.53449 * 108.43136 * 302.95158 * 23 22 21 26 26 C 1.53083 * 109.48985 * 55.45405 * 25 23 22 27 27 H 1.09001 * 109.47225 * 297.65451 * 1 2 3 28 28 H 1.09004 * 109.47216 * 57.65032 * 1 2 3 29 29 H 1.08996 * 109.47289 * 177.65572 * 1 2 3 30 30 H 1.08999 * 109.46892 * 240.00299 * 2 1 3 31 31 H 1.09001 * 109.47388 * 183.42018 * 3 2 1 32 32 H 1.08996 * 109.47513 * 303.41875 * 3 2 1 33 33 H 1.09003 * 109.47368 * 63.42064 * 3 2 1 34 34 H 1.09000 * 109.46972 * 30.00095 * 5 4 2 35 35 H 1.08996 * 109.47227 * 149.99413 * 5 4 2 36 36 H 0.97005 * 120.00327 * 180.02562 * 9 8 6 37 37 H 1.09000 * 108.88886 * 120.16733 * 18 16 14 38 38 H 1.09004 * 110.56047 * 359.87026 * 18 16 14 39 39 H 1.08003 * 123.15522 * 121.56526 * 21 19 18 40 40 H 1.08002 * 123.16503 * 179.70866 * 22 21 19 41 41 H 1.08996 * 109.46992 * 295.44421 * 25 23 22 42 42 H 1.09008 * 109.46249 * 175.45812 * 25 23 22 43 43 H 1.08997 * 109.46816 * 239.99006 * 26 25 23 44 44 H 1.09005 * 109.46536 * 120.00102 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8703 -1.8749 1.0617 6 6 2.0087 -3.1101 1.0078 7 1 0.9340 -3.0219 1.0680 8 6 2.5925 -4.3529 0.8826 9 7 3.9012 -4.4603 0.8097 10 14 1.5246 -5.8841 0.8164 11 1 1.1728 -6.1816 -0.5953 12 1 2.2691 -7.0321 1.3936 13 1 0.2829 -5.6558 1.5984 14 6 1.6837 -0.2367 2.4203 15 8 0.8976 0.6799 2.5331 16 6 2.2864 -0.8680 3.6487 17 1 3.3409 -1.0776 3.4694 18 6 1.5141 -2.1821 3.9721 19 6 0.9093 -2.0722 5.3780 20 1 0.3336 -2.9653 5.6208 21 6 0.0228 -0.8355 5.4077 22 6 0.6661 0.2915 5.1062 23 6 2.1511 0.0938 4.8366 24 1 2.6336 1.0465 4.6182 25 6 2.7845 -0.5651 6.0692 26 6 2.0404 -1.8630 6.3935 27 1 -0.3634 0.4770 0.9103 28 1 -0.3634 0.5499 -0.8682 29 1 -0.3633 -1.0268 -0.0420 30 1 1.8933 -0.5138 -0.8900 31 1 3.1283 1.4430 -0.0613 32 1 1.6276 1.9737 -0.8577 33 1 1.7277 1.9383 0.9191 34 1 3.4552 -1.7995 0.1450 35 1 3.5425 -1.9378 1.9174 36 1 4.3120 -5.3346 0.7212 37 1 2.2124 -3.0185 3.9414 38 1 0.7180 -2.3468 3.2460 39 1 -1.0300 -0.8690 5.6464 40 1 0.1838 1.2574 5.0771 41 1 2.7176 0.1141 6.9190 42 1 3.8316 -0.7882 5.8640 43 1 1.6203 -1.7998 7.3973 44 1 2.7343 -2.7021 6.3424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593444677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:52 Heat of formation + Delta-G solvation = -32.500084 kcal Electronic energy + Delta-G solvation = -23559.796841 eV Core-core repulsion = 20476.602284 eV Total energy + Delta-G solvation = -3083.194556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50305 -38.41774 -35.20682 -33.25662 -31.79453 -30.59691 -30.38602 -29.73356 -26.94434 -26.57133 -23.43411 -22.73288 -21.90175 -21.18205 -20.64688 -18.01956 -16.68089 -16.36093 -16.16689 -15.62533 -15.29453 -14.73112 -14.38444 -13.95557 -13.85751 -12.97850 -12.73038 -12.50776 -12.50084 -12.27088 -11.89522 -11.74637 -11.72302 -11.70508 -11.60946 -11.36353 -11.14342 -11.00338 -10.93458 -10.85246 -10.61963 -10.33631 -10.22558 -9.89923 -9.74043 -9.59112 -9.40734 -8.70336 -8.50733 -8.22088 -7.60044 -6.15307 -4.20814 2.76728 3.22906 3.30609 3.33638 3.55201 4.00545 4.35708 4.96412 5.05633 5.07678 5.17823 5.40632 5.51362 5.56676 5.64736 5.70173 5.73863 5.78201 5.86238 5.91066 5.92481 5.99687 6.13923 6.18035 6.22887 6.28120 6.36443 6.40456 6.46783 6.48826 6.52840 6.56930 6.73963 6.78925 6.85861 6.93529 6.98972 7.12401 7.24471 7.43954 7.68371 7.81482 8.10606 8.47077 8.85262 9.17421 9.46061 10.91247 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.008851 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.567451 B = 3162.629509 C = 4458.032625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 C -0.164 4.164 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.525 4.525 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.524 3.476 15 O -0.562 6.562 16 C -0.093 4.093 17 H 0.092 0.908 18 C -0.083 4.083 19 C -0.062 4.062 20 H 0.073 0.927 21 C -0.188 4.188 22 C -0.111 4.111 23 C -0.045 4.045 24 H 0.074 0.926 25 C -0.109 4.109 26 C -0.110 4.110 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 6.544 6.525 9.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.325 5.325 5 C 0.117 3.883 6 C -0.564 4.564 7 H 0.078 0.922 8 C -0.137 4.137 9 N -0.531 5.531 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.313 3.687 15 O -0.443 6.443 16 C -0.115 4.115 17 H 0.110 0.890 18 C -0.121 4.121 19 C -0.081 4.081 20 H 0.092 0.908 21 C -0.206 4.206 22 C -0.129 4.129 23 C -0.064 4.064 24 H 0.092 0.908 25 C -0.147 4.147 26 C -0.147 4.147 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.394 6.854 6.532 9.766 hybrid contribution -0.487 -1.127 -0.364 1.280 sum -2.881 5.728 6.168 8.897 Atomic orbital electron populations 1.22193 0.95816 1.01878 1.02473 1.20777 0.94189 0.92087 0.88439 1.22165 1.00399 0.97086 1.02558 1.48297 1.50303 1.29678 1.04190 1.19453 0.89665 0.81015 0.98159 1.21449 0.93583 0.90673 1.50711 0.92177 1.24891 0.94886 0.98891 0.95043 1.69917 1.08904 1.24516 1.49772 0.86616 0.80604 0.82651 0.78364 1.20673 1.21123 1.19719 1.20369 0.81249 0.82413 0.84665 1.90493 1.35804 1.31409 1.86639 1.21890 1.01042 0.96291 0.92237 0.89029 1.21973 0.99910 0.95408 0.94768 1.20710 0.95216 0.96407 0.95740 0.90833 1.23644 0.98162 0.94679 1.04115 1.23521 0.94873 0.97658 0.96887 1.20508 0.94434 0.97674 0.93797 0.90793 1.21631 0.99186 0.96769 0.97108 1.21641 0.97232 0.97625 0.98247 0.90282 0.93419 0.92795 0.90201 0.93311 0.92751 0.91063 0.95095 0.94338 0.92655 0.90434 0.90683 0.87282 0.86945 0.92159 0.91732 0.92440 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.15 37.16 0.34 -2.68 16 2 C 0.15 2.81 3.27 -67.93 -0.22 2.58 16 3 C -0.16 -2.72 9.18 37.15 0.34 -2.38 16 4 N -0.59 -12.37 2.41 -167.47 -0.40 -12.78 16 5 C 0.24 5.52 4.82 -5.19 -0.03 5.50 16 6 C -0.53 -13.24 7.79 -34.44 -0.27 -13.50 16 7 H 0.06 1.57 7.55 -52.48 -0.40 1.17 16 8 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -24.13 13.29 55.43 0.74 -23.39 16 10 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 C 0.52 10.65 5.85 -10.98 -0.06 10.58 16 15 O -0.56 -11.87 10.78 5.56 0.06 -11.81 16 16 C -0.09 -1.71 1.83 -90.04 -0.16 -1.88 16 17 H 0.09 1.71 6.52 -51.93 -0.34 1.38 16 18 C -0.08 -1.54 4.11 -25.00 -0.10 -1.64 16 19 C -0.06 -0.98 3.52 -90.57 -0.32 -1.30 16 20 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 21 C -0.19 -2.98 9.81 -35.32 -0.35 -3.33 16 22 C -0.11 -1.81 7.76 -35.30 -0.27 -2.08 16 23 C -0.05 -0.72 2.82 -90.55 -0.26 -0.98 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 C -0.11 -1.49 5.70 -26.46 -0.15 -1.64 16 26 C -0.11 -1.51 5.70 -26.46 -0.15 -1.66 16 27 H 0.08 1.56 5.88 -51.93 -0.31 1.26 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.51 7.80 -51.93 -0.40 1.10 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.29 6.32 -51.93 -0.33 0.96 16 34 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16 35 H 0.04 0.93 5.93 -51.93 -0.31 0.62 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.07 1.60 6.84 -51.93 -0.36 1.24 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -26.78 332.86 -8.85 -35.63 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.48 Total: 4.76 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -1.76 Total: -12.80 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.33 Total: -36.17 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.06 Total: -11.81 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.78 -8.85 -35.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593444677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.127 kcal (2) G-P(sol) polarization free energy of solvation -26.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds