Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00212 * 2 1 4 4 N 1.46499 * 109.47059 * 124.99971 * 3 2 1 5 5 C 1.46501 * 120.00130 * 264.92841 * 4 3 2 6 6 C 1.50699 * 109.47022 * 275.55540 * 5 4 3 7 7 H 1.08002 * 120.00149 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00232 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00068 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00426 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46932 * 60.00220 * 10 8 6 12 12 H 1.48494 * 109.47380 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47070 * 300.00251 * 10 8 6 14 14 C 1.34774 * 119.99940 * 84.92252 * 4 3 2 15 15 O 1.21281 * 119.99825 * 5.01569 * 14 4 3 16 16 C 1.50705 * 120.00185 * 185.01174 * 14 4 3 17 17 C 1.52951 * 109.41416 * 186.41076 * 16 14 4 18 18 C 1.53171 * 109.44668 * 176.90691 * 17 16 14 19 19 C 1.53149 * 108.88630 * 56.57151 * 18 17 16 20 20 C 1.52843 * 117.67961 * 91.49138 * 19 18 17 21 21 C 1.52810 * 117.74906 * 160.37490 * 19 18 17 22 22 C 1.53144 * 115.00622 * 306.06005 * 19 18 17 23 23 C 1.52933 * 109.41114 * 66.05077 * 16 14 4 24 24 H 1.08005 * 120.00432 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.99753 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.00141 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47056 * 5.00469 * 3 2 1 28 28 H 1.08998 * 109.47431 * 245.00435 * 3 2 1 29 29 H 1.08995 * 109.47239 * 35.55818 * 5 4 3 30 30 H 1.09004 * 109.46878 * 155.55599 * 5 4 3 31 31 H 0.96998 * 120.00524 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.35017 * 306.22868 * 16 14 4 33 33 H 1.09003 * 109.47578 * 56.90863 * 17 16 14 34 34 H 1.09000 * 109.47267 * 296.89826 * 17 16 14 35 35 H 1.09000 * 109.57224 * 296.74704 * 18 17 16 36 36 H 1.09004 * 109.56827 * 176.39111 * 18 17 16 37 37 H 1.09007 * 117.49932 * 0.27260 * 20 19 18 38 38 H 1.09000 * 117.50642 * 215.22729 * 20 19 18 39 39 H 1.09002 * 117.50345 * 144.89161 * 21 19 18 40 40 H 1.08997 * 117.52747 * 359.83977 * 21 19 18 41 41 H 1.08998 * 109.57273 * 173.75359 * 22 19 18 42 42 H 1.09004 * 109.57248 * 294.11283 * 22 19 18 43 43 H 1.09000 * 109.47716 * 303.08762 * 23 16 14 44 44 H 1.08999 * 109.47502 * 63.09647 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5967 1.9651 2.3914 6 6 2.8577 3.4472 2.3127 7 1 3.2770 3.8748 1.4139 8 6 2.5603 4.2576 3.3877 9 7 2.0493 3.7372 4.4821 10 14 2.8845 6.0947 3.2905 11 1 2.0984 6.6776 2.1736 12 1 2.4820 6.7367 4.5676 13 1 4.3314 6.3302 3.0533 14 6 4.2148 0.7737 1.0132 15 8 4.5780 0.3305 -0.0557 16 6 5.1289 0.7004 2.2092 17 6 6.4968 0.1741 1.7721 18 6 7.4495 0.1721 2.9715 19 6 6.8299 -0.6637 4.0953 20 6 7.1805 -2.1503 4.1505 21 6 7.7604 -1.1870 5.1887 22 6 5.4123 -0.2515 4.5025 23 6 4.5229 -0.2361 3.2554 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.5349 1.7919 2.5663 30 1 3.1744 1.5374 3.2109 31 1 1.8403 4.3072 5.2386 32 1 5.2438 1.6962 2.6374 33 1 6.8999 0.8160 0.9888 34 1 6.3905 -0.8415 1.3908 35 1 7.6021 1.1942 3.3182 36 1 8.4052 -0.2622 2.6779 37 1 7.8576 -2.5364 3.3885 38 1 6.4031 -2.8389 4.4816 39 1 7.3646 -1.2420 6.2028 40 1 8.8191 -0.9399 5.1100 41 1 5.0171 -0.9666 5.2239 42 1 5.4348 0.7435 4.9470 43 1 3.5265 0.1150 3.5239 44 1 4.4548 -1.2437 2.8452 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597683618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = -9.774744 kcal Electronic energy + Delta-G solvation = -22579.548879 eV Core-core repulsion = 19497.339767 eV Total energy + Delta-G solvation = -3082.209112 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.89996 -38.37592 -35.48458 -34.48550 -33.26609 -32.11858 -30.59660 -28.03052 -27.39740 -25.26809 -23.11880 -22.50992 -22.40010 -21.18969 -19.71066 -18.56884 -17.99472 -16.66305 -16.09174 -15.65210 -15.19388 -15.01765 -14.50058 -14.31978 -14.29732 -13.34756 -13.27696 -12.89234 -12.74226 -12.44919 -12.14852 -11.99923 -11.68912 -11.59696 -11.41007 -11.36170 -11.25045 -10.99821 -10.87186 -10.82618 -10.55296 -10.34337 -10.19096 -9.90320 -9.81846 -9.57008 -9.43560 -9.13800 -8.77775 -8.48334 -7.69085 -6.17778 -4.24576 2.58896 3.23992 3.29033 3.31242 3.46763 3.88069 4.10529 4.34791 4.75121 4.89206 5.01526 5.12664 5.15422 5.28553 5.38319 5.47900 5.54642 5.59493 5.63894 5.70831 5.81926 5.84481 5.96000 5.96565 6.05844 6.17669 6.20679 6.24598 6.29801 6.33446 6.36611 6.39383 6.49916 6.51584 6.69420 6.78139 6.86624 6.94718 7.09433 7.25580 7.59474 7.76811 8.07552 8.39940 8.79950 9.06748 9.42878 10.88639 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012109 B = 0.006855 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.833523 B = 4083.503221 C = 5490.631079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.143 3.857 4 N -0.591 5.591 5 C 0.226 3.774 6 C -0.538 4.538 7 H 0.059 0.941 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.520 3.480 15 O -0.576 6.576 16 C -0.100 4.100 17 C -0.092 4.092 18 C -0.081 4.081 19 C -0.116 4.116 20 C -0.177 4.177 21 C -0.180 4.180 22 C -0.078 4.078 23 C -0.111 4.111 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.265 0.735 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.291 -8.328 -0.073 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.321 5.321 5 C 0.106 3.894 6 C -0.577 4.577 7 H 0.077 0.923 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.309 3.691 15 O -0.458 6.458 16 C -0.121 4.121 17 C -0.129 4.129 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.213 4.213 21 C -0.217 4.217 22 C -0.115 4.115 23 C -0.149 4.149 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.390 -8.480 -0.418 10.057 hybrid contribution 0.004 1.086 0.151 1.096 sum 5.394 -7.394 -0.267 9.157 Atomic orbital electron populations 1.23757 0.95782 1.01480 1.02244 1.23396 0.96036 0.99380 0.98392 1.20380 0.92291 0.94620 0.90722 1.48206 1.13342 1.55119 1.15415 1.19743 0.96955 0.92541 0.80137 1.21473 1.43143 0.92402 1.00696 0.92257 1.24911 0.94762 0.98879 0.95133 1.69907 1.42774 1.35947 1.04251 0.86602 0.78888 0.84910 0.77358 1.20179 1.21138 1.20108 1.20569 0.82089 0.76910 0.89571 1.90568 1.75383 1.50283 1.29525 1.21180 0.94282 1.02176 0.94497 1.21273 0.93367 1.01738 0.96572 1.21168 0.97387 0.99472 0.93775 1.21549 0.96241 0.95313 0.98453 1.22984 1.03445 0.92829 1.02089 1.22966 0.98875 1.04809 0.95059 1.21121 0.91439 1.01900 0.97044 1.21667 1.00028 0.98735 0.94431 0.88984 0.88472 0.87934 0.89826 0.90509 0.95025 0.92452 0.92502 0.87729 0.91681 0.91722 0.91337 0.92124 0.89219 0.89150 0.89070 0.89209 0.91984 0.90745 0.89497 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 14.32 29.02 0.42 -2.46 16 2 C -0.15 -2.59 9.80 -36.03 -0.35 -2.94 16 3 C 0.14 2.74 5.86 -5.19 -0.03 2.71 16 4 N -0.59 -12.52 2.45 -176.43 -0.43 -12.95 16 5 C 0.23 5.27 4.53 -5.19 -0.02 5.25 16 6 C -0.54 -13.91 9.38 -34.44 -0.32 -14.23 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -24.08 13.29 55.43 0.74 -23.34 16 10 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 14 C 0.52 10.88 6.93 -10.98 -0.08 10.80 16 15 O -0.58 -13.07 15.63 5.56 0.09 -12.99 16 16 C -0.10 -1.82 1.61 -91.83 -0.15 -1.97 16 17 C -0.09 -1.47 4.50 -26.67 -0.12 -1.59 16 18 C -0.08 -1.09 5.67 -26.57 -0.15 -1.25 16 19 C -0.12 -1.52 1.97 -154.54 -0.31 -1.83 16 20 C -0.18 -2.06 9.93 -26.79 -0.27 -2.32 16 21 C -0.18 -2.04 9.99 -26.81 -0.27 -2.31 16 22 C -0.08 -1.13 5.67 -26.56 -0.15 -1.28 16 23 C -0.11 -1.84 4.78 -26.67 -0.13 -1.97 16 24 H 0.09 1.18 8.06 -52.48 -0.42 0.75 16 25 H 0.10 1.39 7.84 -52.48 -0.41 0.98 16 26 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 27 H 0.08 1.59 7.68 -51.93 -0.40 1.19 16 28 H 0.08 1.49 7.51 -51.93 -0.39 1.10 16 29 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.06 1.34 4.01 -51.93 -0.21 1.13 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.10 2.08 7.69 -51.93 -0.40 1.68 16 33 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.06 1.06 8.11 -51.93 -0.42 0.64 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.59 5.34 -51.93 -0.28 1.31 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -27.69 352.45 -8.88 -36.58 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.54 Total: 5.72 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.02 Total: -13.76 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.30 Total: -36.29 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.69 -8.88 -36.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597683618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.802 kcal (2) G-P(sol) polarization free energy of solvation -27.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds