Wall clock time and date at job start Mon Mar 30 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.62876 * 2 1 4 4 C 1.53006 * 109.63044 * 239.40590 * 2 1 3 5 5 C 1.50107 * 110.07120 * 190.34056 * 4 2 1 6 6 C 1.31544 * 123.78825 * 17.65438 * 5 4 2 7 7 C 1.47108 * 118.10349 * 179.30414 * 6 5 4 8 8 O 1.21618 * 119.99732 * 324.56070 * 7 6 5 9 9 N 1.34769 * 120.00248 * 144.56202 * 7 6 5 10 10 C 1.46964 * 120.65481 * 353.61711 * 9 7 6 11 11 C 1.53192 * 108.88661 * 233.53668 * 10 9 7 12 12 C 1.53042 * 109.31176 * 305.43620 * 11 10 9 13 13 C 1.53041 * 109.53637 * 61.36994 * 12 11 10 14 14 H 1.08998 * 109.49990 * 58.58136 * 13 12 11 15 15 C 1.50693 * 109.52549 * 178.66765 * 13 12 11 16 16 H 1.07997 * 120.00339 * 32.62884 * 15 13 12 17 17 C 1.37879 * 120.00146 * 212.63311 * 15 13 12 18 18 N 1.31513 * 120.00108 * 180.08492 * 17 15 13 19 19 Si 1.86798 * 119.99908 * 0.08385 * 17 15 13 20 20 H 1.48510 * 109.47173 * 95.38520 * 19 17 15 21 21 H 1.48498 * 109.47451 * 215.38490 * 19 17 15 22 22 H 1.48495 * 109.47244 * 335.38711 * 19 17 15 23 23 C 1.46928 * 120.63438 * 173.79547 * 9 7 6 24 24 C 1.50090 * 123.79380 * 359.02665 * 6 5 4 25 25 C 1.53004 * 110.13445 * 17.44551 * 24 6 5 26 26 H 1.08996 * 109.47704 * 299.60860 * 1 2 3 27 27 H 1.08999 * 109.47454 * 59.61209 * 1 2 3 28 28 H 1.09010 * 109.47252 * 179.60732 * 1 2 3 29 29 H 1.09002 * 109.36375 * 310.74442 * 4 2 1 30 30 H 1.08998 * 109.36343 * 70.48169 * 4 2 1 31 31 H 1.08003 * 118.10483 * 197.37782 * 5 4 2 32 32 H 1.08998 * 109.46856 * 113.74717 * 10 9 7 33 33 H 1.09002 * 109.71219 * 353.46297 * 10 9 7 34 34 H 1.09005 * 109.49641 * 185.49098 * 11 10 9 35 35 H 1.09000 * 109.52737 * 65.40555 * 11 10 9 36 36 H 1.08997 * 109.46122 * 301.34950 * 12 11 10 37 37 H 1.08999 * 109.45923 * 181.38316 * 12 11 10 38 38 H 0.97001 * 120.00117 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.58310 * 6.60364 * 23 9 7 40 40 H 1.08991 * 109.58850 * 246.32310 * 23 9 7 41 41 H 1.09005 * 109.36199 * 137.65249 * 24 6 5 42 42 H 1.09002 * 109.36075 * 257.24255 * 24 6 5 43 43 H 1.09003 * 109.63071 * 69.96038 * 25 24 6 44 44 H 1.08997 * 109.63274 * 190.54645 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0440 -0.7335 -1.2405 5 6 3.5235 -0.9611 -1.1283 6 6 4.1910 -0.8890 0.0029 7 6 5.6382 -1.1507 -0.0286 8 8 6.0885 -1.9870 -0.7882 9 7 6.4651 -0.4639 0.7843 10 6 5.9583 0.6444 1.6057 11 6 6.8080 1.8902 1.3363 12 6 8.2832 1.5573 1.5713 13 6 8.7199 0.4561 0.6024 14 1 8.5611 0.7897 -0.4231 15 6 10.1808 0.1514 0.8116 16 1 10.6146 0.2374 1.7969 17 6 10.9636 -0.2372 -0.2547 18 7 12.2382 -0.5048 -0.0718 19 14 10.2139 -0.3837 -1.9594 20 1 10.4481 0.8744 -2.7130 21 1 10.8440 -1.5179 -2.6816 22 1 8.7534 -0.6237 -1.8388 23 6 7.8918 -0.8060 0.8634 24 6 3.5625 -0.5494 1.3229 25 6 2.0452 -0.7308 1.2461 26 1 -0.3634 0.5077 0.8934 27 1 -0.3634 0.5198 -0.8865 28 1 -0.3634 -1.0277 -0.0070 29 1 1.5332 -1.6921 -1.3311 30 1 1.8418 -0.1311 -2.1262 31 1 4.0708 -1.2022 -2.0276 32 1 6.0269 0.3761 2.6599 33 1 4.9191 0.8480 1.3475 34 1 6.5039 2.6908 2.0108 35 1 6.6673 2.2110 0.3041 36 1 8.4190 1.2136 2.5967 37 1 8.8877 2.4487 1.4041 38 1 12.7890 -0.7778 -0.8221 39 1 8.1288 -1.5603 0.1130 40 1 8.1200 -1.1940 1.8560 41 1 3.9662 -1.2048 2.0947 42 1 3.7902 0.4862 1.5757 43 1 1.8065 -1.7919 1.1732 44 1 1.5803 -0.3083 2.1368 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597901110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:34 Heat of formation + Delta-G solvation = -50.987926 kcal Electronic energy + Delta-G solvation = -22516.698016 eV Core-core repulsion = 19432.701767 eV Total energy + Delta-G solvation = -3083.996249 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60202 -39.29229 -38.38789 -35.42729 -34.06772 -33.29057 -32.26648 -31.59303 -28.26493 -27.10876 -26.13239 -24.33394 -23.21539 -22.60259 -21.35434 -20.31441 -19.33033 -18.95300 -17.78102 -17.17015 -16.60102 -16.06399 -15.69645 -15.44773 -15.30315 -14.99681 -14.90667 -14.63186 -14.24209 -14.03222 -13.87210 -13.79077 -13.59646 -13.34260 -13.09331 -13.07937 -12.67112 -12.58283 -12.25150 -12.06001 -11.72860 -11.70763 -11.60969 -11.35288 -11.19198 -11.11505 -11.03736 -10.80405 -10.55585 -9.98242 -9.52516 -8.39229 -6.41215 0.53654 1.19271 1.27465 1.41696 1.94235 2.21142 2.24790 2.99601 3.47197 3.71352 3.84379 3.98657 4.09374 4.13427 4.16509 4.28198 4.30047 4.43816 4.50765 4.59573 4.63467 4.75328 4.75469 4.82787 4.89899 4.94045 4.98135 4.98860 5.03125 5.09742 5.13201 5.15334 5.23594 5.28490 5.38305 5.42389 5.55752 5.56542 5.60147 5.61984 5.67043 5.79744 6.24980 6.54106 6.67829 7.16550 7.25735 8.77241 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028181 B = 0.004844 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.355925 B = 5778.647322 C = 6311.431916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.084 4.084 5 C -0.080 4.080 6 C -0.173 4.173 7 C 0.528 3.472 8 O -0.608 6.608 9 N -0.603 5.603 10 C 0.076 3.924 11 C -0.130 4.130 12 C -0.102 4.102 13 C 0.005 3.995 14 H 0.019 0.981 15 C -0.510 4.510 16 H 0.046 0.954 17 C 0.025 3.975 18 N -0.941 5.941 19 Si 0.927 3.073 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.265 1.265 23 C 0.122 3.878 24 C -0.089 4.089 25 C -0.110 4.110 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.266 0.734 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.059 0.941 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.597 5.246 3.415 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.176 4.176 7 C 0.320 3.680 8 O -0.491 6.491 9 N -0.333 5.333 10 C -0.044 4.044 11 C -0.168 4.168 12 C -0.140 4.140 13 C -0.015 4.015 14 H 0.037 0.963 15 C -0.548 4.548 16 H 0.064 0.936 17 C -0.173 4.173 18 N -0.581 5.581 19 Si 0.753 3.247 20 H -0.189 1.189 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.001 4.001 24 C -0.125 4.125 25 C -0.148 4.148 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.155 0.845 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -27.174 4.774 2.972 27.750 hybrid contribution 1.278 -0.754 -1.197 1.906 sum -25.897 4.020 1.775 26.267 Atomic orbital electron populations 1.21789 0.93517 1.02192 1.02518 1.21237 0.96588 0.99648 0.93629 0.90212 1.20696 0.89120 1.02103 1.00111 1.22914 0.97929 0.92852 0.96251 1.20798 0.90235 1.07743 0.98851 1.19624 0.88817 0.80578 0.79004 1.90736 1.79110 1.37730 1.41572 1.48406 1.08750 1.33670 1.42478 1.22998 1.00985 0.84961 0.95499 1.21991 0.94428 0.98051 1.02325 1.21468 0.95910 0.97764 0.98826 1.19442 0.92986 0.92962 0.96106 0.96270 1.21242 0.93374 1.44753 0.95450 0.93569 1.25728 0.94938 0.94446 1.02232 1.70005 1.07070 1.48136 1.32871 0.86032 0.79319 0.78161 0.81189 1.18935 1.21488 1.18962 1.21896 0.78998 0.99064 1.00160 1.21046 0.96375 1.03264 0.91777 1.21710 0.93095 1.00979 0.98998 0.91540 0.92179 0.92558 0.89077 0.89113 0.89410 0.89644 0.84488 0.87271 0.92905 0.92323 0.92836 0.92431 0.94120 0.92048 0.90798 0.86570 0.92183 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.19 71.98 0.66 -0.53 16 2 C -0.09 -1.07 2.77 -10.67 -0.03 -1.10 16 3 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 4 C -0.08 -1.27 5.43 29.66 0.16 -1.11 16 5 C -0.08 -1.95 9.35 24.94 0.23 -1.72 16 6 C -0.17 -4.62 5.17 -18.28 -0.09 -4.72 16 7 C 0.53 20.37 7.26 86.57 0.63 21.00 16 8 O -0.61 -29.96 15.92 -4.09 -0.07 -30.03 16 9 N -0.60 -22.19 2.98 -823.08 -2.45 -24.64 16 10 C 0.08 1.88 5.33 86.36 0.46 2.34 16 11 C -0.13 -3.46 6.08 30.67 0.19 -3.28 16 12 C -0.10 -3.77 5.15 30.62 0.16 -3.61 16 13 C 0.00 0.23 1.78 -11.46 -0.02 0.21 16 14 H 0.02 0.97 5.45 -2.39 -0.01 0.95 16 15 C -0.51 -29.40 8.87 25.60 0.23 -29.17 16 16 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 17 C 0.02 1.50 5.47 84.66 0.46 1.96 16 18 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 19 Si 0.93 48.76 26.69 68.60 1.83 50.59 16 20 H -0.26 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 22 H -0.27 -14.37 6.03 99.48 0.60 -13.77 16 23 C 0.12 5.58 5.53 86.36 0.48 6.06 16 24 C -0.09 -1.53 4.27 29.66 0.13 -1.41 16 25 C -0.11 -1.37 5.29 30.72 0.16 -1.21 16 26 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.09 1.27 8.11 -2.39 -0.02 1.25 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 2.62 7.62 -2.91 -0.02 2.60 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.14 2.51 3.24 -2.39 -0.01 2.50 16 34 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 39 H 0.04 2.17 6.08 -2.39 -0.01 2.16 16 40 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.12 1.51 5.02 -2.39 -0.01 1.50 16 43 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -77.58 332.56 4.27 -73.31 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.86 Total: 6.80 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 3.80 Total: -16.28 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.15 Total: -84.40 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.07 Total: -30.03 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.83 Total: 50.59 kcal Total: -77.58 4.27 -73.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.318 kcal (2) G-P(sol) polarization free energy of solvation -77.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds