Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47214 * 2 1 4 4 O 1.42905 * 109.46755 * 179.97438 * 3 2 1 5 5 C 1.35898 * 116.99591 * 179.97438 * 4 3 2 6 6 C 1.38815 * 120.01943 * 0.02882 * 5 4 3 7 7 C 1.38175 * 120.09472 * 179.97438 * 6 5 4 8 8 C 1.38165 * 120.12711 * 359.70027 * 7 6 5 9 9 C 1.38929 * 120.03176 * 0.55050 * 8 7 6 10 10 N 1.39671 * 120.04643 * 179.74264 * 9 8 7 11 11 C 1.46494 * 119.99574 * 359.72956 * 10 9 8 12 12 C 1.53005 * 109.46777 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47448 * 304.99480 * 12 11 10 14 14 C 1.53001 * 109.47080 * 65.00298 * 12 11 10 15 15 C 1.53002 * 109.46893 * 184.99600 * 12 11 10 16 16 C 1.50706 * 109.47153 * 174.99718 * 15 12 11 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 C 1.38575 * 120.01933 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47619 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47372 * 300.00295 * 1 2 3 27 27 H 1.09004 * 109.46690 * 60.00106 * 1 2 3 28 28 H 1.08995 * 109.47471 * 239.99403 * 2 1 3 29 29 H 1.09001 * 109.46837 * 119.99399 * 2 1 3 30 30 H 1.09000 * 109.47359 * 60.00091 * 3 2 1 31 31 H 1.09001 * 109.46728 * 299.99466 * 3 2 1 32 32 H 1.08001 * 119.95307 * 359.96927 * 6 5 4 33 33 H 1.07992 * 119.93862 * 179.97438 * 7 6 5 34 34 H 1.07997 * 119.98386 * 180.27180 * 8 7 6 35 35 H 0.96998 * 119.99603 * 179.72040 * 10 9 8 36 36 H 1.08997 * 109.47647 * 59.99729 * 11 10 9 37 37 H 1.09001 * 109.47420 * 299.99248 * 11 10 9 38 38 H 1.09001 * 109.46866 * 299.99538 * 14 12 11 39 39 H 1.09000 * 109.47309 * 59.99633 * 14 12 11 40 40 H 1.09000 * 109.46932 * 180.02562 * 14 12 11 41 41 H 1.09004 * 109.47178 * 55.00508 * 15 12 11 42 42 H 1.08993 * 109.47411 * 295.00191 * 15 12 11 43 43 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 44 44 H 1.08000 * 120.05948 * 0.04909 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0860 2.6532 0.0001 6 6 3.3304 3.8177 -0.0003 7 6 3.9561 5.0497 -0.0002 8 6 5.3356 5.1269 0.0065 9 6 6.0970 3.9648 0.0017 10 7 7.4915 4.0425 0.0030 11 6 8.1522 5.3500 0.0036 12 6 9.6697 5.1546 0.0057 13 1 9.9537 4.5239 0.8481 14 6 10.0995 4.4845 -1.3009 15 6 10.3589 6.5148 0.1319 16 6 11.8472 6.3141 0.2577 17 1 12.2602 5.3162 0.2480 18 6 12.6816 7.4043 0.3849 19 7 12.1791 8.6196 0.3913 20 14 14.5264 7.1555 0.5400 21 1 14.8901 7.0301 1.9744 22 1 14.9215 5.9188 -0.1808 23 1 15.2343 8.3199 -0.0501 24 6 5.4698 2.7262 0.0012 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8901 32 1 2.2519 3.7607 -0.0007 33 1 3.3658 5.9540 -0.0009 34 1 5.8222 6.0910 0.0110 35 1 8.0224 3.2307 0.0038 36 1 7.8566 5.9062 0.8932 37 1 7.8585 5.9060 -0.8868 38 1 9.6085 3.5155 -1.3908 39 1 9.8155 5.1153 -2.1432 40 1 11.1805 4.3449 -1.2991 41 1 9.9859 7.0304 1.0169 42 1 10.1465 7.1133 -0.7538 43 1 11.2212 8.7489 0.3105 44 1 6.0593 1.8213 0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602484639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = -63.526407 kcal Electronic energy + Delta-G solvation = -20519.285834 eV Core-core repulsion = 17434.745875 eV Total energy + Delta-G solvation = -3084.539959 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12215 -39.41818 -37.83355 -35.67112 -34.75484 -33.88179 -31.36123 -29.84191 -28.40590 -27.69425 -26.87284 -24.86139 -23.81133 -22.71959 -21.81782 -21.10753 -19.25505 -18.82032 -17.36066 -17.20929 -17.01004 -16.65116 -16.16459 -15.74563 -15.59095 -15.27390 -15.09192 -14.56744 -14.50058 -14.36195 -13.73794 -13.61977 -13.52490 -13.26772 -13.01671 -12.99248 -12.60520 -12.49510 -12.33421 -12.24234 -11.98166 -11.94206 -11.77716 -11.67639 -11.52387 -11.44237 -10.88484 -10.62591 -10.52818 -9.28655 -8.65540 -8.40616 -6.35136 0.52215 0.65847 1.52615 1.61416 1.78567 2.07501 2.56055 2.64746 2.91652 3.18364 3.88347 3.93150 3.96514 4.02769 4.05019 4.19547 4.23278 4.30852 4.35260 4.35989 4.55416 4.56646 4.61758 4.66419 4.67842 4.79444 4.82470 4.96293 5.01658 5.12393 5.15792 5.18700 5.26566 5.31265 5.34518 5.38522 5.41481 5.56546 5.59876 5.67462 6.02210 6.21752 6.31708 6.52188 6.61451 6.79013 7.45272 8.75376 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.050592 B = 0.002444 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.311304 B =11452.200291 C =11844.827019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.052 3.948 4 O -0.333 6.333 5 C 0.164 3.836 6 C -0.271 4.271 7 C -0.033 4.033 8 C -0.251 4.251 9 C 0.245 3.755 10 N -0.735 5.735 11 C 0.143 3.857 12 C -0.080 4.080 13 H 0.062 0.938 14 C -0.125 4.125 15 C 0.018 3.982 16 C -0.606 4.606 17 H 0.054 0.946 18 C -0.043 4.043 19 N -0.941 5.941 20 Si 1.118 2.882 21 H -0.274 1.274 22 H -0.269 1.269 23 H -0.285 1.285 24 C -0.250 4.250 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.119 0.881 35 H 0.404 0.596 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.047 0.953 41 H -0.012 1.012 42 H -0.008 1.008 43 H 0.255 0.745 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.639 -15.215 -1.497 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.022 4.022 4 O -0.247 6.247 5 C 0.118 3.882 6 C -0.292 4.292 7 C -0.052 4.052 8 C -0.274 4.274 9 C 0.140 3.860 10 N -0.364 5.364 11 C 0.019 3.981 12 C -0.099 4.099 13 H 0.080 0.920 14 C -0.182 4.182 15 C -0.020 4.020 16 C -0.644 4.644 17 H 0.072 0.928 18 C -0.240 4.240 19 N -0.579 5.579 20 Si 0.940 3.060 21 H -0.200 1.200 22 H -0.193 1.193 23 H -0.211 1.211 24 C -0.274 4.274 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.137 0.863 35 H 0.240 0.760 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.006 0.994 42 H 0.010 0.990 43 H 0.065 0.935 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.053 -14.431 -1.341 25.559 hybrid contribution -1.206 -0.508 -0.103 1.313 sum -22.259 -14.939 -1.445 26.846 Atomic orbital electron populations 1.21679 0.92721 1.03201 1.02732 1.21509 0.97230 0.93907 1.03338 1.23117 0.76936 0.99852 1.02303 1.86004 1.23059 1.27218 1.88426 1.18707 0.91451 0.84549 0.93480 1.21182 1.00612 0.91705 1.15669 1.20948 0.93313 0.97957 0.92994 1.20785 0.94805 0.96919 1.14897 1.17648 0.83799 0.93284 0.91282 1.44765 1.02441 1.08175 1.80983 1.21263 0.91854 0.84744 1.00280 1.21100 0.92393 0.97703 0.98677 0.91998 1.21630 1.01105 0.99478 0.95983 1.19136 0.95459 0.93155 0.94216 1.22431 0.93249 0.95061 1.53613 0.92812 1.27365 1.10986 0.92376 0.93253 1.70888 1.14649 1.23356 1.48998 0.82917 0.69534 0.75986 0.77605 1.20011 1.19343 1.21064 1.19746 0.92428 0.96593 1.18602 0.90971 0.91864 0.91833 0.91230 0.91266 0.91194 0.91142 0.83811 0.83567 0.86343 0.76011 0.93198 0.92684 0.91677 0.93908 0.93376 0.99358 0.98980 0.93509 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.44 16 2 C -0.12 -1.49 6.30 30.59 0.19 -1.29 16 3 C 0.05 0.81 4.74 71.98 0.34 1.15 16 4 O -0.33 -7.76 10.13 -92.40 -0.94 -8.69 16 5 C 0.16 4.18 6.68 22.49 0.15 4.33 16 6 C -0.27 -6.01 9.04 22.39 0.20 -5.81 16 7 C -0.03 -0.77 10.03 22.24 0.22 -0.55 16 8 C -0.25 -6.95 9.31 22.42 0.21 -6.74 16 9 C 0.25 7.10 6.65 38.20 0.25 7.35 16 10 N -0.74 -21.52 5.46 -339.48 -1.85 -23.37 16 11 C 0.14 4.80 4.30 86.38 0.37 5.17 16 12 C -0.08 -3.13 2.37 -10.79 -0.03 -3.15 16 13 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 14 C -0.12 -4.48 8.88 71.98 0.64 -3.84 16 15 C 0.02 0.91 3.76 29.85 0.11 1.02 16 16 C -0.61 -33.87 8.41 25.60 0.22 -33.65 16 17 H 0.05 2.92 7.06 -2.91 -0.02 2.90 16 18 C -0.04 -2.47 5.46 84.65 0.46 -2.01 16 19 N -0.94 -58.42 13.65 21.45 0.29 -58.12 16 20 Si 1.12 50.36 29.90 68.60 2.05 52.41 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 C -0.25 -6.89 9.83 22.49 0.22 -6.67 16 25 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 31 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 32 H 0.14 2.39 6.29 -2.91 -0.02 2.37 16 33 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 34 H 0.12 3.31 6.73 -2.91 -0.02 3.29 16 35 H 0.40 10.79 7.66 -92.71 -0.71 10.08 16 36 H 0.05 1.74 7.94 -2.39 -0.02 1.72 16 37 H 0.05 1.86 7.96 -2.39 -0.02 1.85 16 38 H 0.06 1.91 7.18 -2.39 -0.02 1.89 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 41 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 42 H -0.01 -0.44 8.00 -2.39 -0.02 -0.46 16 43 H 0.26 16.02 7.22 -92.71 -0.67 15.35 16 44 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -65.73 355.57 4.19 -61.54 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.35 Total: 21.35 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 4.28 Total: -45.12 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.56 Total: -81.49 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.94 Total: -8.69 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.41 kcal Total: -65.73 4.19 -61.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602484639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.982 kcal (2) G-P(sol) polarization free energy of solvation -65.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds