Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46687 * 2 1 4 4 O 1.42905 * 109.46911 * 179.97438 * 3 2 1 5 5 C 1.36006 * 117.00044 * 179.97438 * 4 3 2 6 6 C 1.38505 * 120.07912 * 0.02562 * 5 4 3 7 7 C 1.38285 * 120.01992 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.17968 * 359.97438 * 7 6 5 9 9 C 1.38221 * 120.15675 * 0.02562 * 8 7 6 10 10 C 1.38728 * 119.98329 * 359.97438 * 9 8 7 11 11 N 1.39965 * 120.09000 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99960 * 0.02863 * 11 10 9 13 13 C 1.53005 * 109.46930 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46906 * 54.99739 * 13 12 11 15 15 C 1.52991 * 109.46983 * 294.99775 * 13 12 11 16 16 C 1.52998 * 109.46673 * 174.99424 * 13 12 11 17 17 C 1.50701 * 109.46860 * 184.99650 * 16 13 12 18 18 H 1.08003 * 120.00232 * 0.02562 * 17 16 13 19 19 C 1.37874 * 120.00071 * 179.97438 * 17 16 13 20 20 N 1.31521 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99913 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47361 * 89.99694 * 21 19 17 23 23 H 1.48503 * 109.46875 * 209.99786 * 21 19 17 24 24 H 1.48493 * 109.47010 * 329.99382 * 21 19 17 25 25 H 1.08994 * 109.47748 * 299.99852 * 1 2 3 26 26 H 1.08998 * 109.47109 * 60.00384 * 1 2 3 27 27 H 1.09004 * 109.46465 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47440 * 239.99720 * 2 1 3 29 29 H 1.09006 * 109.46955 * 119.99333 * 2 1 3 30 30 H 1.09004 * 109.47260 * 59.99975 * 3 2 1 31 31 H 1.08998 * 109.47032 * 299.99663 * 3 2 1 32 32 H 1.08003 * 119.99374 * 359.95667 * 6 5 4 33 33 H 1.07997 * 119.91569 * 179.72137 * 7 6 5 34 34 H 1.07999 * 119.91890 * 179.97438 * 8 7 6 35 35 H 1.08003 * 120.01014 * 179.97438 * 9 8 7 36 36 H 0.96997 * 120.00166 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.46831 * 299.99300 * 12 11 10 38 38 H 1.08997 * 109.47467 * 59.99351 * 12 11 10 39 39 H 1.09000 * 109.47487 * 60.00290 * 15 13 12 40 40 H 1.09003 * 109.47352 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.47271 * 299.99741 * 15 13 12 42 42 H 1.08996 * 109.47465 * 304.99908 * 16 13 12 43 43 H 1.08998 * 109.46921 * 65.00450 * 16 13 12 44 44 H 0.96996 * 119.99801 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0864 2.6545 0.0001 6 6 3.3336 3.8171 -0.0003 7 6 3.9626 5.0486 -0.0003 8 6 5.3432 5.1239 0.0008 9 6 6.1016 3.9683 0.0013 10 6 5.4775 2.7294 0.0012 11 7 6.2433 1.5579 0.0012 12 6 7.7061 1.6389 0.0018 13 6 8.2951 0.2268 0.0022 14 1 7.8913 -0.3356 -0.8397 15 6 7.9283 -0.4783 1.3095 16 6 9.8178 0.3094 -0.1230 17 6 10.3877 -1.0802 -0.2460 18 1 9.7298 -1.9366 -0.2363 19 6 11.7491 -1.2583 -0.3720 20 7 12.2465 -2.4710 -0.4798 21 14 12.8871 0.2230 -0.3895 22 1 13.3077 0.5405 0.9988 23 1 14.0851 -0.0830 -1.2119 24 1 12.1732 1.3888 -0.9693 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 2.2550 3.7619 -0.0010 33 1 3.3740 5.9540 -0.0052 34 1 5.8301 6.0879 0.0004 35 1 7.1799 4.0299 0.0017 36 1 5.8056 0.6923 0.0007 37 1 8.0408 2.1723 -0.8879 38 1 8.0401 2.1719 0.8920 39 1 6.8436 -0.5372 1.3986 40 1 8.3483 -1.4842 1.3100 41 1 8.3322 0.0840 2.1514 42 1 10.0786 0.8889 -1.0085 43 1 10.2293 0.7938 0.7625 44 1 13.2043 -2.5963 -0.5681 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602487697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = -37.670997 kcal Electronic energy + Delta-G solvation = -21106.703805 eV Core-core repulsion = 18023.285021 eV Total energy + Delta-G solvation = -3083.418784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19687 -37.85293 -36.57224 -34.19060 -33.86613 -32.07267 -29.98194 -29.08833 -27.35702 -26.65751 -25.73510 -23.06066 -22.10448 -21.92906 -20.76654 -19.33348 -18.09768 -16.98256 -16.65849 -16.40075 -15.88610 -14.96004 -14.75751 -14.43566 -14.20258 -14.16164 -13.98278 -13.41979 -13.12977 -12.91191 -12.68439 -12.38692 -12.33467 -12.18851 -11.77407 -11.61234 -11.49213 -11.30526 -11.06900 -10.91937 -10.86355 -10.75348 -10.52012 -10.06253 -9.78004 -9.72180 -9.57247 -9.11642 -8.54155 -8.46863 -6.98563 -6.04429 -4.02158 1.47923 1.69108 3.12279 3.30576 3.38310 3.41360 3.75642 3.94126 4.44907 4.61081 4.62341 4.90748 4.94331 5.02518 5.11435 5.13725 5.28856 5.31639 5.37186 5.42601 5.57578 5.62522 5.64829 5.68793 5.78673 5.81004 5.88458 5.94396 6.13631 6.22147 6.32177 6.37790 6.41763 6.67194 6.70886 6.84982 6.87555 7.02590 7.21694 7.24840 7.39331 7.67798 7.79236 8.04853 8.53419 9.00277 9.57902 11.08871 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.003615 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.138266 B = 7744.150729 C = 9033.783492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.065 3.935 4 O -0.320 6.320 5 C 0.047 3.953 6 C -0.163 4.163 7 C -0.155 4.155 8 C -0.103 4.103 9 C -0.174 4.174 10 C 0.206 3.794 11 N -0.735 5.735 12 C 0.125 3.875 13 C -0.087 4.087 14 H 0.068 0.932 15 C -0.133 4.133 16 C -0.006 4.006 17 C -0.515 4.515 18 H 0.074 0.926 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.404 0.596 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.017 0.983 43 H 0.014 0.986 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.498 12.013 1.530 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.011 4.011 4 O -0.234 6.234 5 C -0.001 4.001 6 C -0.183 4.183 7 C -0.175 4.175 8 C -0.122 4.122 9 C -0.198 4.198 10 C 0.101 3.899 11 N -0.365 5.365 12 C 0.001 3.999 13 C -0.106 4.106 14 H 0.086 0.914 15 C -0.191 4.191 16 C -0.044 4.044 17 C -0.553 4.553 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.706 3.294 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.239 0.761 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.025 11.725 1.509 24.121 hybrid contribution 0.408 0.569 -0.016 0.700 sum -20.617 12.293 1.493 24.051 Atomic orbital electron populations 1.21682 0.94440 1.02451 1.02030 1.21488 0.95842 0.95092 1.03854 1.22745 0.78967 0.98425 1.00924 1.85967 1.20726 1.26807 1.89926 1.18406 0.90352 0.84667 1.06644 1.20918 0.99167 0.92033 1.06170 1.20596 0.94507 0.96497 1.05924 1.20784 0.93641 0.97591 1.00209 1.20550 1.00041 0.90197 1.09001 1.17312 0.87078 0.88257 0.97296 1.44840 1.05376 1.05314 1.80933 1.21627 0.78565 0.99347 1.00336 1.21230 0.98437 0.92525 0.98360 0.91374 1.21726 0.98530 1.02014 0.96809 1.19567 0.90204 0.98263 0.96351 1.21095 0.92568 0.91724 1.49947 0.90827 1.25024 0.98263 0.95570 0.94670 1.69913 1.12802 1.20863 1.50731 0.86799 0.80473 0.83833 0.78310 1.20331 1.21451 1.18992 0.92476 0.92474 0.91778 0.90776 0.90793 0.92490 0.92473 0.86104 0.86639 0.86344 0.85406 0.76050 0.92688 0.92720 0.94730 0.91305 0.93584 0.96475 0.96809 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.13 -1.03 6.30 -26.73 -0.17 -1.20 16 3 C 0.06 0.62 4.74 37.16 0.18 0.80 16 4 O -0.32 -4.22 9.38 -19.76 -0.19 -4.40 16 5 C 0.05 0.66 6.70 -39.08 -0.26 0.39 16 6 C -0.16 -1.94 9.04 -39.47 -0.36 -2.30 16 7 C -0.15 -1.75 10.04 -39.56 -0.40 -2.15 16 8 C -0.10 -1.23 10.04 -39.58 -0.40 -1.63 16 9 C -0.17 -2.39 9.31 -39.41 -0.37 -2.76 16 10 C 0.21 3.06 6.67 -83.56 -0.56 2.50 16 11 N -0.74 -11.35 5.46 -58.49 -0.32 -11.67 16 12 C 0.13 2.05 4.31 -4.04 -0.02 2.04 16 13 C -0.09 -1.66 2.37 -90.62 -0.22 -1.88 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -2.46 8.88 37.15 0.33 -2.13 16 16 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 17 C -0.52 -14.36 8.96 -34.44 -0.31 -14.67 16 18 H 0.07 2.20 7.30 -52.48 -0.38 1.82 16 19 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 20 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 21 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 31 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 32 H 0.12 1.16 6.30 -52.48 -0.33 0.83 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.69 6.74 -52.48 -0.35 1.33 16 36 H 0.40 6.23 7.02 -40.82 -0.29 5.94 16 37 H 0.05 0.90 7.95 -51.93 -0.41 0.49 16 38 H 0.05 0.88 7.95 -51.93 -0.41 0.47 16 39 H 0.03 0.55 7.18 -51.93 -0.37 0.18 16 40 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 43 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -30.43 352.19 -8.91 -39.34 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.45 Total: 3.46 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -2.37 Total: -21.97 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.45 Total: -38.65 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.19 Total: -4.40 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.43 -8.91 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602487697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.665 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds