Wall clock time and date at job start Mon Mar 30 2020 02:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46687 * 2 1 4 4 O 1.42905 * 109.46911 * 179.97438 * 3 2 1 5 5 C 1.36006 * 117.00044 * 179.97438 * 4 3 2 6 6 C 1.38505 * 120.07912 * 0.02562 * 5 4 3 7 7 C 1.38285 * 120.01992 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.17968 * 359.97438 * 7 6 5 9 9 C 1.38221 * 120.15675 * 0.02562 * 8 7 6 10 10 C 1.38728 * 119.98329 * 359.97438 * 9 8 7 11 11 N 1.39965 * 120.09000 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99960 * 0.02863 * 11 10 9 13 13 C 1.53005 * 109.46930 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46906 * 54.99739 * 13 12 11 15 15 C 1.52991 * 109.46983 * 294.99775 * 13 12 11 16 16 C 1.52998 * 109.46673 * 174.99424 * 13 12 11 17 17 C 1.50701 * 109.46860 * 184.99650 * 16 13 12 18 18 H 1.08003 * 120.00232 * 0.02562 * 17 16 13 19 19 C 1.37874 * 120.00071 * 179.97438 * 17 16 13 20 20 N 1.31521 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99913 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47361 * 89.99694 * 21 19 17 23 23 H 1.48503 * 109.46875 * 209.99786 * 21 19 17 24 24 H 1.48493 * 109.47010 * 329.99382 * 21 19 17 25 25 H 1.08994 * 109.47748 * 299.99852 * 1 2 3 26 26 H 1.08998 * 109.47109 * 60.00384 * 1 2 3 27 27 H 1.09004 * 109.46465 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47440 * 239.99720 * 2 1 3 29 29 H 1.09006 * 109.46955 * 119.99333 * 2 1 3 30 30 H 1.09004 * 109.47260 * 59.99975 * 3 2 1 31 31 H 1.08998 * 109.47032 * 299.99663 * 3 2 1 32 32 H 1.08003 * 119.99374 * 359.95667 * 6 5 4 33 33 H 1.07997 * 119.91569 * 179.72137 * 7 6 5 34 34 H 1.07999 * 119.91890 * 179.97438 * 8 7 6 35 35 H 1.08003 * 120.01014 * 179.97438 * 9 8 7 36 36 H 0.96997 * 120.00166 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.46831 * 299.99300 * 12 11 10 38 38 H 1.08997 * 109.47467 * 59.99351 * 12 11 10 39 39 H 1.09000 * 109.47487 * 60.00290 * 15 13 12 40 40 H 1.09003 * 109.47352 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.47271 * 299.99741 * 15 13 12 42 42 H 1.08996 * 109.47465 * 304.99908 * 16 13 12 43 43 H 1.08998 * 109.46921 * 65.00450 * 16 13 12 44 44 H 0.96996 * 119.99801 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0864 2.6545 0.0001 6 6 3.3336 3.8171 -0.0003 7 6 3.9626 5.0486 -0.0003 8 6 5.3432 5.1239 0.0008 9 6 6.1016 3.9683 0.0013 10 6 5.4775 2.7294 0.0012 11 7 6.2433 1.5579 0.0012 12 6 7.7061 1.6389 0.0018 13 6 8.2951 0.2268 0.0022 14 1 7.8913 -0.3356 -0.8397 15 6 7.9283 -0.4783 1.3095 16 6 9.8178 0.3094 -0.1230 17 6 10.3877 -1.0802 -0.2460 18 1 9.7298 -1.9366 -0.2363 19 6 11.7491 -1.2583 -0.3720 20 7 12.2465 -2.4710 -0.4798 21 14 12.8871 0.2230 -0.3895 22 1 13.3077 0.5405 0.9988 23 1 14.0851 -0.0830 -1.2119 24 1 12.1732 1.3888 -0.9693 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 2.2550 3.7619 -0.0010 33 1 3.3740 5.9540 -0.0052 34 1 5.8301 6.0879 0.0004 35 1 7.1799 4.0299 0.0017 36 1 5.8056 0.6923 0.0007 37 1 8.0408 2.1723 -0.8879 38 1 8.0401 2.1719 0.8920 39 1 6.8436 -0.5372 1.3986 40 1 8.3483 -1.4842 1.3100 41 1 8.3322 0.0840 2.1514 42 1 10.0786 0.8889 -1.0085 43 1 10.2293 0.7938 0.7625 44 1 13.2043 -2.5963 -0.5681 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602487697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:50 Heat of formation + Delta-G solvation = -54.466433 kcal Electronic energy + Delta-G solvation = -21107.432110 eV Core-core repulsion = 18023.285021 eV Total energy + Delta-G solvation = -3084.147089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13659 -38.89676 -37.85991 -35.50191 -34.75442 -33.98744 -30.91332 -30.40441 -29.01411 -27.37179 -27.08654 -24.58176 -23.20110 -22.84847 -21.72560 -20.86988 -19.13029 -18.91214 -17.78418 -17.17845 -17.01197 -16.34115 -15.99657 -15.85869 -15.27625 -15.12818 -15.06972 -14.74002 -14.43321 -14.33832 -13.97242 -13.53349 -13.39501 -13.30663 -12.99302 -12.87068 -12.65154 -12.44507 -12.28012 -12.19304 -12.02914 -11.74850 -11.73256 -11.64442 -11.48511 -11.33604 -11.12288 -10.87736 -10.74191 -9.40746 -8.26474 -8.04562 -6.29464 0.53465 0.73625 1.37337 1.39062 1.50668 2.26949 2.38046 2.63142 2.99118 3.09008 3.87769 3.96835 3.99712 4.07707 4.14161 4.23659 4.26970 4.30765 4.36054 4.56058 4.57093 4.59211 4.71488 4.74003 4.79160 4.82794 4.89116 4.96674 5.03705 5.12666 5.18377 5.21445 5.29636 5.33603 5.35590 5.45849 5.51773 5.62767 5.68812 5.75107 5.96687 6.22273 6.32855 6.66731 6.77967 6.90882 7.34225 8.90231 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.003615 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.138266 B = 7744.150729 C = 9033.783492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.340 6.340 5 C 0.034 3.966 6 C -0.166 4.166 7 C -0.150 4.150 8 C -0.108 4.108 9 C -0.185 4.185 10 C 0.177 3.823 11 N -0.741 5.741 12 C 0.141 3.859 13 C -0.080 4.080 14 H 0.054 0.946 15 C -0.126 4.126 16 C -0.003 4.003 17 C -0.520 4.520 18 H 0.034 0.966 19 C 0.001 3.999 20 N -0.954 5.954 21 Si 0.948 3.052 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.244 1.244 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.401 0.599 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.955 15.215 1.788 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.015 4.015 4 O -0.255 6.255 5 C -0.014 4.014 6 C -0.185 4.185 7 C -0.170 4.170 8 C -0.127 4.127 9 C -0.208 4.208 10 C 0.073 3.927 11 N -0.372 5.372 12 C 0.017 3.983 13 C -0.099 4.099 14 H 0.073 0.927 15 C -0.183 4.183 16 C -0.041 4.041 17 C -0.559 4.559 18 H 0.053 0.947 19 C -0.195 4.195 20 N -0.595 5.595 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.167 1.167 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.146 0.854 36 H 0.236 0.764 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.041 0.959 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.524 14.956 1.769 27.095 hybrid contribution 0.720 -0.463 -0.100 0.861 sum -21.804 14.493 1.669 26.235 Atomic orbital electron populations 1.21663 0.92603 1.03088 1.02782 1.21505 0.97346 0.94319 1.03005 1.22978 0.77367 0.99334 1.01864 1.85951 1.22576 1.26984 1.89995 1.18626 0.90322 0.85535 1.06881 1.21246 1.00365 0.91616 1.05300 1.21012 0.94617 0.97388 1.03950 1.21114 0.94104 0.98005 0.99478 1.20742 1.00393 0.90534 1.09179 1.17574 0.87764 0.88230 0.99093 1.44654 1.04689 1.05638 1.82228 1.21309 0.79396 0.96841 1.00731 1.21061 0.96077 0.94598 0.98184 0.92727 1.21622 0.99839 1.00148 0.96678 1.19507 0.92702 0.95232 0.96688 1.21421 0.92392 0.93044 1.48996 0.94733 1.26003 1.00260 0.98784 0.94424 1.70074 1.13321 1.23546 1.52590 0.85688 0.78017 0.80265 0.78881 1.19235 1.21330 1.16724 0.91677 0.91735 0.91250 0.91708 0.91616 0.91394 0.91467 0.83851 0.83740 0.83971 0.85387 0.76439 0.92563 0.92055 0.92540 0.94316 0.92969 0.96042 0.95921 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.95 6.30 30.60 0.19 -1.76 16 3 C 0.06 1.05 4.74 71.98 0.34 1.39 16 4 O -0.34 -8.73 9.38 -93.62 -0.88 -9.61 16 5 C 0.03 0.91 6.70 22.59 0.15 1.06 16 6 C -0.17 -3.51 9.04 22.34 0.20 -3.30 16 7 C -0.15 -2.88 10.04 22.29 0.22 -2.65 16 8 C -0.11 -2.27 10.04 22.27 0.22 -2.05 16 9 C -0.19 -4.77 9.31 22.38 0.21 -4.56 16 10 C 0.18 5.08 6.67 38.22 0.25 5.33 16 11 N -0.74 -22.53 5.46 -338.96 -1.85 -24.38 16 12 C 0.14 4.51 4.31 86.38 0.37 4.88 16 13 C -0.08 -3.09 2.37 -10.80 -0.03 -3.12 16 14 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 15 C -0.13 -4.66 8.88 71.98 0.64 -4.03 16 16 C 0.00 -0.16 3.52 29.85 0.10 -0.05 16 17 C -0.52 -29.78 8.96 25.60 0.23 -29.55 16 18 H 0.03 2.18 7.30 -2.91 -0.02 2.16 16 19 C 0.00 0.09 5.47 84.65 0.46 0.55 16 20 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 21 Si 0.95 44.26 27.47 68.60 1.88 46.14 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.04 7.66 -2.38 -0.02 1.02 16 31 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 32 H 0.14 2.27 6.30 -2.91 -0.02 2.25 16 33 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.13 3.18 6.74 -2.91 -0.02 3.16 16 36 H 0.40 12.40 7.02 -92.71 -0.65 11.75 16 37 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 38 H 0.06 1.87 7.95 -2.39 -0.02 1.85 16 39 H 0.06 1.82 7.18 -2.39 -0.02 1.81 16 40 H 0.04 1.64 6.95 -2.39 -0.02 1.62 16 41 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 43 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 44 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -66.89 352.19 4.01 -62.89 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.26 Total: 23.69 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 4.29 Total: -38.67 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -1.55 Total: -84.43 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.88 Total: -9.61 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -66.89 4.01 -62.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602487697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.421 kcal (2) G-P(sol) polarization free energy of solvation -66.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds