Wall clock time and date at job start Mon Mar 30 2020 01:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47649 * 2 1 4 4 H 1.09004 * 109.46751 * 305.55736 * 3 2 1 5 5 C 1.50694 * 109.47317 * 185.55620 * 3 2 1 6 6 H 1.08004 * 120.00024 * 244.27669 * 5 3 2 7 7 C 1.37878 * 120.00137 * 64.27446 * 5 3 2 8 8 N 1.31509 * 119.99770 * 8.05609 * 7 5 3 9 9 Si 1.86795 * 119.99967 * 188.04980 * 7 5 3 10 10 H 1.48500 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47187 * 119.99920 * 9 7 5 12 12 H 1.48504 * 109.47556 * 240.00214 * 9 7 5 13 13 N 1.46896 * 109.47013 * 65.55059 * 3 2 1 14 14 C 1.46897 * 111.00446 * 206.07619 * 13 3 2 15 15 H 1.09002 * 109.47024 * 326.70897 * 14 13 3 16 16 C 1.53002 * 109.46805 * 86.70527 * 14 13 3 17 17 C 1.52994 * 109.47461 * 206.70394 * 14 13 3 18 18 H 1.08997 * 109.47289 * 55.00636 * 17 14 13 19 19 O 1.42896 * 109.47115 * 295.00171 * 17 14 13 20 20 C 1.42908 * 113.99756 * 150.00331 * 19 17 14 21 21 C 1.50703 * 109.46827 * 175.00099 * 17 14 13 22 22 C 1.38235 * 120.00063 * 84.73117 * 21 17 14 23 23 C 1.38234 * 120.00097 * 179.80489 * 22 21 17 24 24 C 1.38235 * 119.99849 * 0.40037 * 23 22 21 25 25 C 1.38231 * 120.00170 * 359.85251 * 24 23 22 26 26 C 1.38234 * 119.99770 * 359.95618 * 25 24 23 27 27 H 1.08998 * 109.46763 * 302.02207 * 1 2 3 28 28 H 1.08999 * 109.46938 * 62.01822 * 1 2 3 29 29 H 1.08996 * 109.47674 * 182.02053 * 1 2 3 30 30 H 1.08999 * 109.47024 * 239.99870 * 2 1 3 31 31 H 1.08998 * 109.47124 * 120.00174 * 2 1 3 32 32 H 0.96998 * 120.00725 * 2.50223 * 8 7 5 33 33 H 1.00903 * 111.00188 * 330.03610 * 13 3 2 34 34 H 1.08999 * 109.47160 * 185.35774 * 16 14 13 35 35 H 1.09005 * 109.47251 * 305.35567 * 16 14 13 36 36 H 1.08992 * 109.47297 * 65.35641 * 16 14 13 37 37 H 1.08997 * 109.46689 * 180.02562 * 20 19 17 38 38 H 1.09000 * 109.46510 * 299.99469 * 20 19 17 39 39 H 1.08996 * 109.47045 * 59.99969 * 20 19 17 40 40 H 1.07999 * 119.99946 * 359.97438 * 22 21 17 41 41 H 1.07999 * 120.00494 * 180.22476 * 23 22 21 42 42 H 1.08007 * 120.00018 * 179.83436 * 24 23 22 43 43 H 1.07998 * 120.00444 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.99791 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1376 6 1 4.1561 1.8239 0.6649 7 6 4.1283 0.9623 -1.2879 8 7 3.3831 0.6486 -2.3251 9 14 5.9827 0.7546 -1.3730 10 1 6.5876 1.1746 -0.0835 11 1 6.3098 -0.6707 -1.6317 12 1 6.5250 1.5941 -2.4714 13 7 1.6629 2.0952 1.2608 14 6 1.5578 3.5503 1.0894 15 1 2.2895 3.8833 0.3533 16 6 0.1503 3.9066 0.6067 17 6 1.8286 4.2423 2.4268 18 1 2.7949 3.9191 2.8141 19 8 0.8020 3.8962 3.3586 20 6 1.2347 3.8800 4.7206 21 6 1.8421 5.7358 2.2259 22 6 0.6565 6.4463 2.2434 23 6 0.6692 7.8168 2.0632 24 6 1.8669 8.4757 1.8572 25 6 3.0520 7.7645 1.8346 26 6 3.0396 6.3946 2.0188 27 1 -0.3633 0.5449 0.8713 28 1 -0.3633 0.4822 -0.9075 29 1 -0.3634 -1.0270 0.0362 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.4241 0.7906 -2.2940 33 1 0.8036 1.7108 1.6240 34 1 0.1002 4.9733 0.3886 35 1 -0.0785 3.3400 -0.2960 36 1 -0.5734 3.6602 1.3835 37 1 0.3981 3.6082 5.3642 38 1 2.0356 3.1501 4.8386 39 1 1.6004 4.8687 4.9974 40 1 -0.2796 5.9310 2.4005 41 1 -0.2567 8.3724 2.0804 42 1 1.8766 9.5461 1.7137 43 1 3.9877 8.2792 1.6733 44 1 3.9656 5.8390 2.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602611909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:16 Heat of formation + Delta-G solvation = -32.227325 kcal Electronic energy + Delta-G solvation = -22466.539398 eV Core-core repulsion = 19383.356670 eV Total energy + Delta-G solvation = -3083.182729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.69495 -37.66334 -36.44544 -33.66182 -31.81332 -30.99633 -30.77522 -28.47004 -26.87594 -25.69436 -25.27000 -22.98181 -22.38407 -21.61712 -19.91354 -19.76258 -17.05773 -16.59433 -16.15162 -15.52105 -15.32759 -14.77593 -14.35855 -14.31721 -13.93919 -13.71404 -13.31009 -13.07904 -12.95546 -12.65874 -12.43067 -12.24198 -11.96410 -11.88221 -11.43394 -11.19472 -11.06682 -11.00358 -10.70656 -10.56674 -10.44648 -10.39788 -10.09174 -9.98272 -9.83867 -9.31504 -8.79487 -8.71409 -8.53740 -8.29872 -7.20921 -6.25969 -3.96522 1.43564 1.51437 3.47079 3.50015 3.64404 3.86213 4.07484 4.56707 4.82276 5.02383 5.06975 5.20350 5.33487 5.40526 5.45785 5.51663 5.57892 5.65940 5.68403 5.74366 5.83412 5.94076 5.98862 6.01151 6.03639 6.06938 6.16132 6.21329 6.37087 6.49728 6.57570 6.59179 6.67603 6.69261 6.71085 6.87703 6.95419 7.10718 7.23077 7.45003 7.49883 8.10863 8.20937 8.53944 8.74807 8.99872 9.73060 11.08681 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.005596 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.681843 B = 5002.318499 C = 5851.268866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.208 3.792 4 H -0.006 1.006 5 C -0.575 4.575 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 1.069 2.931 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.672 5.672 14 C 0.104 3.896 15 H 0.091 0.909 16 C -0.176 4.176 17 C 0.141 3.859 18 H 0.076 0.924 19 O -0.373 6.373 20 C 0.034 3.966 21 C -0.101 4.101 22 C -0.094 4.094 23 C -0.129 4.129 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.110 4.110 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.269 0.731 33 H 0.323 0.677 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.033 0.967 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 11.173 10.313 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C 0.100 3.900 4 H 0.011 0.989 5 C -0.614 4.614 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.217 1.217 13 N -0.303 5.303 14 C -0.007 4.007 15 H 0.109 0.891 16 C -0.235 4.235 17 C 0.082 3.918 18 H 0.094 0.906 19 O -0.292 6.292 20 C -0.063 4.063 21 C -0.102 4.102 22 C -0.112 4.112 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.128 4.128 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.458 10.611 9.511 14.663 hybrid contribution -1.812 0.716 0.544 2.023 sum -5.270 11.328 10.055 16.037 Atomic orbital electron populations 1.21893 0.98895 0.99953 1.00261 1.21820 0.92017 1.00646 1.02147 1.19283 0.96191 0.89280 0.85258 0.98852 1.22010 0.90883 1.44645 1.03814 0.92723 1.25723 1.06590 0.94185 0.92234 1.70737 1.07821 1.46187 1.30689 0.83548 0.74755 0.76695 0.75141 1.21568 1.21433 1.21710 1.60584 1.37102 1.01168 1.31437 1.21424 0.96127 0.90121 0.93039 0.89129 1.22464 0.98786 1.01259 1.00994 1.21150 0.91700 0.88029 0.90890 0.90634 1.87862 1.36037 1.89977 1.15282 1.22704 1.00356 0.99658 0.83588 1.20546 0.93405 0.96642 0.99600 1.21027 0.98224 0.93598 0.98384 1.21131 0.97814 0.94673 1.01121 1.21101 0.92833 0.99570 1.00872 1.21088 0.98066 0.94232 1.00788 1.21113 0.97829 0.94463 0.99366 0.93805 0.93853 0.94082 0.91002 0.92979 0.91938 0.85863 0.92826 0.93108 0.92225 0.90322 0.93815 0.94814 0.85654 0.86470 0.86547 0.86264 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.78 37.16 0.36 -2.52 16 2 C -0.13 -2.93 5.20 -26.73 -0.14 -3.07 16 3 C 0.21 5.07 1.44 -68.87 -0.10 4.97 16 4 H -0.01 -0.16 6.60 -51.93 -0.34 -0.50 16 5 C -0.57 -15.84 8.50 -34.44 -0.29 -16.14 16 6 H 0.05 1.55 7.83 -52.48 -0.41 1.14 16 7 C 0.02 0.45 5.17 -17.82 -0.09 0.36 16 8 N -0.92 -27.15 12.85 55.43 0.71 -26.44 16 9 Si 1.07 25.34 29.91 -169.99 -5.08 20.25 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.67 -14.17 6.00 -100.96 -0.61 -14.78 16 14 C 0.10 1.97 2.25 -67.72 -0.15 1.82 16 15 H 0.09 1.98 7.66 -51.93 -0.40 1.58 16 16 C -0.18 -3.02 8.15 37.16 0.30 -2.71 16 17 C 0.14 2.31 2.29 -27.89 -0.06 2.25 16 18 H 0.08 1.31 7.70 -51.93 -0.40 0.91 16 19 O -0.37 -5.78 8.48 -35.23 -0.30 -6.07 16 20 C 0.03 0.43 10.81 101.05 1.09 1.52 16 21 C -0.10 -1.51 4.69 -104.62 -0.49 -2.00 16 22 C -0.09 -1.30 7.48 -39.58 -0.30 -1.59 16 23 C -0.13 -1.57 10.05 -39.58 -0.40 -1.96 16 24 C -0.13 -1.47 10.05 -39.59 -0.40 -1.86 16 25 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 26 C -0.11 -1.56 9.68 -39.58 -0.38 -1.94 16 27 H 0.04 0.77 6.40 -51.93 -0.33 0.43 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.84 6.26 -51.93 -0.33 1.51 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.27 7.95 6.17 -40.82 -0.25 7.70 16 33 H 0.32 6.43 6.20 -39.29 -0.24 6.19 16 34 H 0.05 0.86 6.34 -51.93 -0.33 0.53 16 35 H 0.05 0.93 7.52 -51.93 -0.39 0.54 16 36 H 0.06 0.97 7.38 -51.93 -0.38 0.59 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.13 1.70 7.23 -52.49 -0.38 1.32 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -29.47 348.45 -8.68 -38.15 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.21 Total: 8.45 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -1.44 Total: -24.81 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.11 Total: -41.21 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.30 Total: -6.07 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.47 -8.68 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602611909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.919 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds