Wall clock time and date at job start Mon Mar 30 2020 01:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46979 * 2 1 4 4 H 1.09001 * 109.47077 * 53.90878 * 3 2 1 5 5 C 1.53001 * 109.47262 * 293.90911 * 3 2 1 6 6 C 1.52999 * 109.46866 * 173.90470 * 3 2 1 7 7 H 1.09001 * 109.47501 * 306.18008 * 6 3 2 8 8 C 1.53001 * 109.47152 * 186.17616 * 6 3 2 9 9 N 1.46495 * 109.47288 * 180.02562 * 8 6 3 10 10 C 1.38859 * 120.00180 * 180.02562 * 9 8 6 11 11 C 1.39569 * 119.84174 * 359.73292 * 10 9 8 12 12 C 1.36333 * 120.16072 * 179.71591 * 11 10 9 13 13 C 1.40883 * 119.83660 * 0.55370 * 12 11 10 14 14 C 1.41138 * 120.15772 * 179.69700 * 13 12 11 15 15 H 1.08002 * 120.00425 * 160.96393 * 14 13 12 16 16 C 1.39864 * 119.99937 * 340.96629 * 14 13 12 17 17 N 1.30903 * 119.99988 * 332.08977 * 16 14 13 18 18 Si 1.86805 * 120.00217 * 152.09160 * 16 14 13 19 19 H 1.48492 * 109.46947 * 94.99237 * 18 16 14 20 20 H 1.48497 * 109.47062 * 214.99659 * 18 16 14 21 21 H 1.48503 * 109.47082 * 334.99435 * 18 16 14 22 22 C 1.40885 * 119.69142 * 359.71853 * 13 12 11 23 23 C 1.36339 * 119.83567 * 0.02562 * 22 13 12 24 24 O 1.42908 * 109.47134 * 66.18110 * 6 3 2 25 25 C 1.42890 * 114.00019 * 261.09484 * 24 6 3 26 26 H 1.09006 * 109.47428 * 59.99641 * 1 2 3 27 27 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47104 * 299.99779 * 1 2 3 29 29 H 1.09000 * 109.47104 * 240.00221 * 2 1 3 30 30 H 1.08994 * 109.47095 * 120.00209 * 2 1 3 31 31 H 1.08997 * 109.46965 * 59.99837 * 5 3 2 32 32 H 1.09001 * 109.47048 * 299.99985 * 5 3 2 33 33 H 1.08998 * 109.46900 * 180.02562 * 5 3 2 34 34 H 1.08998 * 109.47631 * 300.00886 * 8 6 3 35 35 H 1.09001 * 109.46632 * 60.00323 * 8 6 3 36 36 H 0.96998 * 120.00303 * 0.02562 * 9 8 6 37 37 H 1.07999 * 119.91705 * 359.97236 * 11 10 9 38 38 H 1.08003 * 120.08391 * 180.27167 * 12 11 10 39 39 H 0.97002 * 120.00155 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.08647 * 179.97438 * 22 13 12 41 41 H 1.08000 * 119.92312 * 179.97438 * 23 22 13 42 42 H 1.09003 * 109.47411 * 185.00175 * 25 24 6 43 43 H 1.08997 * 109.47654 * 305.00378 * 25 24 6 44 44 H 1.09002 * 109.47228 * 65.00734 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5903 1.9869 0.8304 5 6 1.6588 2.1183 -1.3187 6 6 3.5623 1.4452 0.1532 7 1 3.8397 0.8690 1.0358 8 6 4.0567 2.8848 0.3078 9 7 5.5144 2.8875 0.4538 10 6 6.1944 4.0881 0.6101 11 6 5.4863 5.2908 0.6220 12 6 6.1467 6.4729 0.7808 13 6 7.5485 6.4793 0.9214 14 6 8.2397 7.6996 1.0798 15 1 9.2398 7.7049 1.4876 16 6 7.6295 8.9021 0.7087 17 7 6.7249 8.9124 -0.2374 18 14 8.1055 10.4937 1.5630 19 1 9.1497 11.1889 0.7684 20 1 6.9109 11.3676 1.6829 21 1 8.6344 10.1897 2.9170 22 6 8.2573 5.2618 0.9028 23 6 7.5832 4.0868 0.7484 24 8 4.1586 0.8587 -1.0055 25 6 4.5304 -0.5108 -0.8377 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.5743 2.1163 -1.4277 32 1 2.1084 1.5739 -2.1492 33 1 2.0225 3.1458 -1.3188 34 1 3.7793 3.4612 -0.5748 35 1 3.6019 3.3322 1.1916 36 1 6.0046 2.0506 0.4414 37 1 4.4123 5.2847 0.5092 38 1 5.5971 7.4025 0.7941 39 1 6.3014 9.7463 -0.4945 40 1 9.3320 5.2593 1.0096 41 1 8.1251 3.1527 0.7335 42 1 5.0549 -0.8567 -1.7284 43 1 5.1843 -0.6063 0.0291 44 1 3.6354 -1.1143 -0.6859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602612068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:28 Heat of formation + Delta-G solvation = -56.828465 kcal Electronic energy + Delta-G solvation = -21422.207836 eV Core-core repulsion = 18337.958322 eV Total energy + Delta-G solvation = -3084.249514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.35327 -39.44318 -36.55033 -36.23789 -34.78668 -32.03319 -31.33137 -30.41426 -28.63330 -27.27564 -26.49230 -25.39009 -23.39441 -22.48925 -21.52885 -20.88959 -19.16899 -18.01226 -17.47611 -16.98738 -16.75140 -16.36816 -15.76872 -15.54068 -15.27191 -14.84857 -14.54818 -14.47901 -14.24921 -14.17905 -13.84802 -13.66413 -13.27722 -13.16881 -12.75774 -12.72992 -12.64477 -12.60094 -12.49321 -12.24539 -12.11672 -11.76876 -11.62695 -11.38943 -11.34654 -11.18922 -10.95152 -10.35244 -10.28538 -9.40283 -8.66070 -8.18314 -5.95040 1.11461 1.18068 1.40081 1.52090 1.62287 2.26420 2.77498 2.85142 2.90725 3.75417 3.86083 3.92191 3.98540 4.21858 4.31067 4.44529 4.50255 4.52201 4.56089 4.60335 4.68438 4.71975 4.75027 4.79320 4.90113 4.93218 5.03865 5.09141 5.15513 5.18765 5.22536 5.27145 5.28288 5.45422 5.49695 5.52808 5.68811 5.80465 5.95708 6.18798 6.32811 6.39579 6.66764 6.87791 7.07170 7.15909 7.33751 8.40609 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.003337 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.236576 B = 8389.612853 C = 9003.490017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.105 4.105 4 H 0.084 0.916 5 C -0.141 4.141 6 C 0.093 3.907 7 H 0.076 0.924 8 C 0.135 3.865 9 N -0.747 5.747 10 C 0.103 3.897 11 C -0.169 4.169 12 C -0.157 4.157 13 C 0.040 3.960 14 C -0.511 4.511 15 H 0.069 0.931 16 C 0.040 3.960 17 N -0.826 5.826 18 Si 0.971 3.029 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.261 1.261 22 C -0.204 4.204 23 C -0.160 4.160 24 O -0.393 6.393 25 C 0.020 3.980 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.394 0.606 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.241 -16.450 0.724 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.124 4.124 4 H 0.102 0.898 5 C -0.198 4.198 6 C 0.035 3.965 7 H 0.094 0.906 8 C 0.010 3.990 9 N -0.382 5.382 10 C 0.004 3.996 11 C -0.191 4.191 12 C -0.178 4.178 13 C 0.037 3.963 14 C -0.541 4.541 15 H 0.087 0.913 16 C -0.174 4.174 17 N -0.452 5.452 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.224 4.224 23 C -0.182 4.182 24 O -0.312 6.312 25 C -0.076 4.076 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.228 0.772 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.553 -16.142 0.383 19.855 hybrid contribution 0.512 0.572 0.267 0.813 sum -11.041 -15.570 0.650 19.099 Atomic orbital electron populations 1.21806 0.94986 1.02054 1.02055 1.21614 0.96705 0.94932 1.02089 1.21584 0.93496 0.97992 0.99335 0.89771 1.21760 1.01274 0.99742 0.97069 1.22351 0.93022 0.92495 0.88617 0.90611 1.21355 0.81478 0.96412 0.99783 1.43722 1.05154 1.04588 1.84705 1.17433 0.91042 0.86281 1.04886 1.20199 0.98076 0.91953 1.08894 1.20770 0.94461 0.96339 1.06184 1.17791 0.92395 0.93163 0.92925 1.19555 1.02384 0.91811 1.40349 0.91279 1.26648 0.93788 1.04085 0.92916 1.69981 1.23349 1.30421 1.21475 0.85382 0.78921 0.76731 0.79770 1.18803 1.19098 1.18496 1.20683 0.97900 0.92794 1.11064 1.20078 0.92373 0.97377 1.08366 1.87961 1.80415 1.26345 1.36500 1.23082 0.99880 0.82091 1.02553 0.92585 0.92015 0.92540 0.91705 0.91520 0.91540 0.92867 0.93980 0.94078 0.92289 0.77245 0.87976 0.88617 0.90440 0.88562 0.86711 0.89342 0.93547 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.69 71.98 0.70 -1.25 16 2 C -0.12 -1.70 4.34 30.59 0.13 -1.56 16 3 C -0.10 -1.95 2.20 -10.79 -0.02 -1.97 16 4 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 5 C -0.14 -2.93 8.53 71.98 0.61 -2.31 16 6 C 0.09 2.07 2.03 30.59 0.06 2.14 16 7 H 0.08 1.49 7.62 -2.39 -0.02 1.47 16 8 C 0.13 4.01 4.36 86.38 0.38 4.39 16 9 N -0.75 -26.09 5.59 -338.99 -1.90 -27.99 16 10 C 0.10 4.57 6.67 38.67 0.26 4.83 16 11 C -0.17 -8.24 9.23 22.15 0.20 -8.04 16 12 C -0.16 -8.73 8.71 22.47 0.20 -8.54 16 13 C 0.04 2.30 5.61 -21.27 -0.12 2.18 16 14 C -0.51 -29.22 8.99 23.38 0.21 -29.01 16 15 H 0.07 3.84 7.98 -2.91 -0.02 3.82 16 16 C 0.04 2.14 4.94 85.23 0.42 2.56 16 17 N -0.83 -45.50 11.25 21.82 0.25 -45.25 16 18 Si 0.97 40.16 29.64 68.60 2.03 42.19 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 22 C -0.20 -10.56 9.74 22.47 0.22 -10.34 16 23 C -0.16 -7.29 9.82 22.15 0.22 -7.08 16 24 O -0.39 -9.41 9.00 -148.98 -1.34 -10.75 16 25 C 0.02 0.34 10.49 113.37 1.19 1.52 16 26 H 0.06 0.74 6.60 -2.38 -0.02 0.73 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.99 6.44 -2.39 -0.02 0.97 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.16 6.60 -2.39 -0.02 1.14 16 32 H 0.05 1.19 7.53 -2.39 -0.02 1.18 16 33 H 0.04 1.00 6.60 -2.39 -0.02 0.99 16 34 H 0.04 1.38 6.38 -2.39 -0.02 1.37 16 35 H 0.06 1.74 7.94 -2.39 -0.02 1.72 16 36 H 0.39 12.26 8.34 -92.71 -0.77 11.48 16 37 H 0.10 4.53 6.68 -2.91 -0.02 4.51 16 38 H 0.10 5.54 6.14 -2.91 -0.02 5.52 16 39 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 40 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.05 0.71 8.00 -2.39 -0.02 0.69 16 44 H 0.06 0.78 5.78 -2.39 -0.01 0.77 16 Total: -1.00 -63.72 345.90 3.90 -59.82 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.21 Total: 34.47 kcal Atomic # 6 Polarization: -57.15 SS G_CDS: 4.65 Total: -52.49 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.65 Total: -73.24 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -1.34 Total: -10.75 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -63.72 3.90 -59.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602612068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.988 kcal (2) G-P(sol) polarization free energy of solvation -63.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds