Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46947 * 2 1 4 4 H 1.08999 * 109.47033 * 304.99452 * 3 2 1 5 5 C 1.52995 * 109.47052 * 65.00465 * 3 2 1 6 6 C 1.53010 * 109.46791 * 185.00003 * 3 2 1 7 7 H 1.08998 * 109.47173 * 60.00056 * 6 3 2 8 8 C 1.52996 * 109.46690 * 180.02562 * 6 3 2 9 9 N 1.46498 * 109.46975 * 184.25551 * 8 6 3 10 10 C 1.39687 * 120.00351 * 179.19239 * 9 8 6 11 11 C 1.39342 * 119.94909 * 359.73157 * 10 9 8 12 12 C 1.38472 * 120.42402 * 179.72178 * 11 10 9 13 13 C 1.37695 * 120.32498 * 0.54916 * 12 11 10 14 14 C 1.40754 * 119.88854 * 359.72141 * 13 12 11 15 15 C 1.41416 * 120.20311 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99430 * 152.35457 * 15 14 13 17 17 C 1.39930 * 120.00309 * 332.35751 * 15 14 13 18 18 N 1.30828 * 119.99804 * 160.44420 * 17 15 14 19 19 Si 1.86803 * 119.99935 * 340.44816 * 17 15 14 20 20 H 1.48498 * 109.46841 * 93.88050 * 19 17 15 21 21 H 1.48495 * 109.46836 * 213.87763 * 19 17 15 22 22 H 1.48501 * 109.47001 * 333.88023 * 19 17 15 23 23 C 1.38274 * 119.95235 * 179.97438 * 10 9 8 24 24 O 1.42900 * 109.47023 * 299.99695 * 6 3 2 25 25 C 1.42908 * 113.99806 * 116.05299 * 24 6 3 26 26 H 1.09005 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47556 * 300.00167 * 1 2 3 28 28 H 1.08998 * 109.46945 * 59.99918 * 1 2 3 29 29 H 1.08994 * 109.47409 * 239.99916 * 2 1 3 30 30 H 1.09004 * 109.47475 * 119.99643 * 2 1 3 31 31 H 1.09004 * 109.47045 * 299.99111 * 5 3 2 32 32 H 1.08999 * 109.48029 * 59.99596 * 5 3 2 33 33 H 1.09005 * 109.46873 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.47369 * 304.25439 * 8 6 3 35 35 H 1.09003 * 109.47502 * 64.26002 * 8 6 3 36 36 H 0.97007 * 120.00250 * 359.19255 * 9 8 6 37 37 H 1.08004 * 119.78573 * 359.97438 * 11 10 9 38 38 H 1.07996 * 119.84052 * 180.27432 * 12 11 10 39 39 H 1.07996 * 120.05909 * 179.74705 * 13 12 11 40 40 H 0.97001 * 119.99612 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.16649 * 359.97438 * 23 10 9 42 42 H 1.08997 * 109.46792 * 63.29545 * 25 24 6 43 43 H 1.09006 * 109.46854 * 303.29878 * 25 24 6 44 44 H 1.09000 * 109.47231 * 183.29528 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 1 3.8532 0.9570 -1.0571 8 6 4.0748 2.8868 -0.1251 9 7 5.5228 2.8929 -0.3472 10 6 6.2156 4.1045 -0.4046 11 6 5.5275 5.3070 -0.2560 12 6 6.2053 6.5135 -0.3054 13 6 7.5662 6.5384 -0.5135 14 6 8.2739 5.3319 -0.6709 15 6 9.6717 5.3496 -0.8843 16 1 10.2764 4.5111 -0.5716 17 6 10.2715 6.4535 -1.5006 18 7 11.5560 6.6610 -1.3641 19 14 9.2381 7.6310 -2.5180 20 1 8.7961 8.7643 -1.6663 21 1 10.0478 8.1488 -3.6499 22 1 8.0488 6.9157 -3.0466 23 6 7.5825 4.1090 -0.6138 24 8 4.1346 0.7377 0.9779 25 6 4.8422 -0.4471 0.6066 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.5489 2.1253 1.3969 32 1 2.0698 1.5875 2.1492 33 1 1.9982 3.1544 1.3071 34 1 3.5829 3.4465 -0.9206 35 1 3.8528 3.3503 0.8362 36 1 6.0006 2.0555 -0.4545 37 1 4.4593 5.2978 -0.0971 38 1 5.6633 7.4397 -0.1847 39 1 8.0899 7.4819 -0.5553 40 1 11.9718 7.4260 -1.7916 41 1 8.1164 3.1777 -0.7326 42 1 5.6949 -0.1803 -0.0177 43 1 4.1774 -1.1081 0.0505 44 1 5.1940 -0.9564 1.5038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602681776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = -45.191671 kcal Electronic energy + Delta-G solvation = -21501.961103 eV Core-core repulsion = 18418.216198 eV Total energy + Delta-G solvation = -3083.744905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.33702 -37.83811 -35.61362 -34.91744 -33.17293 -31.08559 -30.13546 -28.82242 -27.14261 -26.19257 -25.16347 -24.79605 -22.02427 -21.06585 -20.05791 -19.95462 -17.48839 -16.70722 -15.99630 -15.91454 -15.65957 -15.03037 -14.51506 -14.38394 -14.22891 -13.95940 -13.59970 -13.32747 -13.10849 -12.75958 -12.50191 -12.40051 -12.11763 -11.92408 -11.86222 -11.72395 -11.45784 -11.21346 -11.09106 -10.84027 -10.73362 -10.69007 -10.54265 -10.37758 -9.70356 -9.53079 -9.43242 -9.18369 -8.83059 -7.55723 -6.86688 -6.39856 -4.40186 2.75096 2.97898 3.21021 3.31150 3.42882 3.68437 4.01186 4.08855 4.57201 4.64191 4.73019 4.73999 4.97568 5.08307 5.23141 5.30137 5.32144 5.37000 5.49739 5.51951 5.57515 5.60365 5.74367 5.79203 5.85676 5.87819 5.91781 6.03982 6.10489 6.19511 6.29665 6.38997 6.63752 6.85014 6.91498 7.03988 7.13316 7.37305 7.63270 7.75285 7.85828 8.04302 8.40249 8.49024 8.56015 8.83691 8.96088 10.16153 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033860 B = 0.003517 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.740340 B = 7959.021077 C = 8438.272460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.099 4.099 4 H 0.079 0.921 5 C -0.146 4.146 6 C 0.083 3.917 7 H 0.065 0.935 8 C 0.127 3.873 9 N -0.757 5.757 10 C 0.238 3.762 11 C -0.302 4.302 12 C -0.046 4.046 13 C -0.277 4.277 14 C 0.126 3.874 15 C -0.450 4.450 16 H 0.087 0.913 17 C 0.085 3.915 18 N -0.812 5.812 19 Si 0.918 3.082 20 H -0.271 1.271 21 H -0.296 1.296 22 H -0.246 1.246 23 C -0.280 4.280 24 O -0.372 6.372 25 C 0.030 3.970 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.387 0.613 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.283 0.717 41 H 0.095 0.905 42 H 0.041 0.959 43 H 0.039 0.961 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.648 -11.091 1.007 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.118 4.118 4 H 0.097 0.903 5 C -0.203 4.203 6 C 0.024 3.976 7 H 0.083 0.917 8 C 0.002 3.998 9 N -0.389 5.389 10 C 0.138 3.862 11 C -0.325 4.325 12 C -0.065 4.065 13 C -0.297 4.297 14 C 0.122 3.878 15 C -0.479 4.479 16 H 0.105 0.895 17 C -0.133 4.133 18 N -0.436 5.436 19 Si 0.745 3.255 20 H -0.198 1.198 21 H -0.224 1.224 22 H -0.169 1.169 23 C -0.304 4.304 24 O -0.291 6.291 25 C -0.067 4.067 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.220 0.780 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.590 -10.857 1.197 20.705 hybrid contribution 0.011 0.139 -0.738 0.751 sum -17.580 -10.718 0.458 20.594 Atomic orbital electron populations 1.21814 0.95844 1.01384 1.01948 1.21528 0.95848 0.96162 1.01965 1.21462 0.93906 0.96883 0.99557 0.90295 1.21838 1.00602 1.00721 0.97156 1.22446 0.92750 0.92735 0.89626 0.91672 1.21458 0.82746 0.94663 1.00947 1.44363 1.05652 1.05769 1.83166 1.17540 0.91022 0.84736 0.92879 1.19883 0.97538 0.91371 1.23729 1.20352 0.94074 0.95656 0.96457 1.20906 0.94364 0.97309 1.17122 1.17432 0.92759 0.90519 0.87057 1.19459 0.91170 1.03160 1.34089 0.89458 1.26162 0.95109 0.96960 0.95068 1.69722 1.12254 1.26916 1.34741 0.86258 0.80490 0.80063 0.78692 1.19760 1.22357 1.16881 1.20353 0.91237 0.97452 1.21399 1.87957 1.71153 1.38217 1.31768 1.22850 0.95348 0.87252 1.01252 0.93005 0.92348 0.92865 0.92554 0.91398 0.92849 0.91814 0.92297 0.92206 0.91918 0.77952 0.89113 0.89095 0.88507 0.90620 0.88706 0.94058 0.94286 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.12 -0.98 5.05 -26.73 -0.13 -1.12 16 3 C -0.10 -0.94 2.28 -90.61 -0.21 -1.15 16 4 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.15 -1.43 8.45 37.16 0.31 -1.12 16 6 C 0.08 0.94 2.02 -26.73 -0.05 0.89 16 7 H 0.07 0.70 7.61 -51.93 -0.40 0.31 16 8 C 0.13 1.82 4.09 -4.05 -0.02 1.80 16 9 N -0.76 -13.24 5.67 -58.69 -0.33 -13.57 16 10 C 0.24 5.20 6.64 -83.86 -0.56 4.64 16 11 C -0.30 -6.58 9.32 -39.08 -0.36 -6.94 16 12 C -0.05 -1.06 10.02 -39.69 -0.40 -1.46 16 13 C -0.28 -7.03 7.25 -38.83 -0.28 -7.31 16 14 C 0.13 3.35 5.15 -106.85 -0.55 2.80 16 15 C -0.45 -12.66 9.57 -37.74 -0.36 -13.02 16 16 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 17 C 0.09 2.32 5.40 -17.35 -0.09 2.23 16 18 N -0.81 -22.29 13.93 55.55 0.77 -21.52 16 19 Si 0.92 21.74 24.51 -169.99 -4.17 17.58 16 20 H -0.27 -6.26 6.59 56.52 0.37 -5.88 16 21 H -0.30 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.25 -5.98 6.94 56.52 0.39 -5.59 16 23 C -0.28 -6.83 9.63 -38.68 -0.37 -7.21 16 24 O -0.37 -4.56 9.00 -35.23 -0.32 -4.88 16 25 C 0.03 0.29 10.70 101.05 1.08 1.37 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 31 H 0.05 0.45 6.57 -51.93 -0.34 0.11 16 32 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 33 H 0.06 0.62 6.53 -51.93 -0.34 0.28 16 34 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 35 H 0.06 0.96 6.51 -51.93 -0.34 0.62 16 36 H 0.39 6.30 8.08 -40.82 -0.33 5.97 16 37 H 0.09 1.75 6.70 -52.48 -0.35 1.40 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.10 2.46 4.48 -52.49 -0.24 2.22 16 40 H 0.28 7.04 8.30 -40.82 -0.34 6.71 16 41 H 0.09 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.04 0.41 7.76 -51.93 -0.40 0.00 16 43 H 0.04 0.32 8.01 -51.93 -0.42 -0.10 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -29.24 344.37 -7.75 -36.99 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.26 Total: 6.55 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -1.64 Total: -26.34 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.44 Total: -35.09 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.32 Total: -4.88 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.17 Total: 17.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.24 -7.75 -36.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602681776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.202 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds