Wall clock time and date at job start Mon Mar 30 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46947 * 2 1 4 4 H 1.08999 * 109.47033 * 304.99452 * 3 2 1 5 5 C 1.52995 * 109.47052 * 65.00465 * 3 2 1 6 6 C 1.53010 * 109.46791 * 185.00003 * 3 2 1 7 7 H 1.08998 * 109.47173 * 60.00056 * 6 3 2 8 8 C 1.52996 * 109.46690 * 180.02562 * 6 3 2 9 9 N 1.46498 * 109.46975 * 184.25551 * 8 6 3 10 10 C 1.39687 * 120.00351 * 179.19239 * 9 8 6 11 11 C 1.39342 * 119.94909 * 359.73157 * 10 9 8 12 12 C 1.38472 * 120.42402 * 179.72178 * 11 10 9 13 13 C 1.37695 * 120.32498 * 0.54916 * 12 11 10 14 14 C 1.40754 * 119.88854 * 359.72141 * 13 12 11 15 15 C 1.41416 * 120.20311 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99430 * 152.35457 * 15 14 13 17 17 C 1.39930 * 120.00309 * 332.35751 * 15 14 13 18 18 N 1.30828 * 119.99804 * 160.44420 * 17 15 14 19 19 Si 1.86803 * 119.99935 * 340.44816 * 17 15 14 20 20 H 1.48498 * 109.46841 * 93.88050 * 19 17 15 21 21 H 1.48495 * 109.46836 * 213.87763 * 19 17 15 22 22 H 1.48501 * 109.47001 * 333.88023 * 19 17 15 23 23 C 1.38274 * 119.95235 * 179.97438 * 10 9 8 24 24 O 1.42900 * 109.47023 * 299.99695 * 6 3 2 25 25 C 1.42908 * 113.99806 * 116.05299 * 24 6 3 26 26 H 1.09005 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47556 * 300.00167 * 1 2 3 28 28 H 1.08998 * 109.46945 * 59.99918 * 1 2 3 29 29 H 1.08994 * 109.47409 * 239.99916 * 2 1 3 30 30 H 1.09004 * 109.47475 * 119.99643 * 2 1 3 31 31 H 1.09004 * 109.47045 * 299.99111 * 5 3 2 32 32 H 1.08999 * 109.48029 * 59.99596 * 5 3 2 33 33 H 1.09005 * 109.46873 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.47369 * 304.25439 * 8 6 3 35 35 H 1.09003 * 109.47502 * 64.26002 * 8 6 3 36 36 H 0.97007 * 120.00250 * 359.19255 * 9 8 6 37 37 H 1.08004 * 119.78573 * 359.97438 * 11 10 9 38 38 H 1.07996 * 119.84052 * 180.27432 * 12 11 10 39 39 H 1.07996 * 120.05909 * 179.74705 * 13 12 11 40 40 H 0.97001 * 119.99612 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.16649 * 359.97438 * 23 10 9 42 42 H 1.08997 * 109.46792 * 63.29545 * 25 24 6 43 43 H 1.09006 * 109.46854 * 303.29878 * 25 24 6 44 44 H 1.09000 * 109.47231 * 183.29528 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 1 3.8532 0.9570 -1.0571 8 6 4.0748 2.8868 -0.1251 9 7 5.5228 2.8929 -0.3472 10 6 6.2156 4.1045 -0.4046 11 6 5.5275 5.3070 -0.2560 12 6 6.2053 6.5135 -0.3054 13 6 7.5662 6.5384 -0.5135 14 6 8.2739 5.3319 -0.6709 15 6 9.6717 5.3496 -0.8843 16 1 10.2764 4.5111 -0.5716 17 6 10.2715 6.4535 -1.5006 18 7 11.5560 6.6610 -1.3641 19 14 9.2381 7.6310 -2.5180 20 1 8.7961 8.7643 -1.6663 21 1 10.0478 8.1488 -3.6499 22 1 8.0488 6.9157 -3.0466 23 6 7.5825 4.1090 -0.6138 24 8 4.1346 0.7377 0.9779 25 6 4.8422 -0.4471 0.6066 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.5489 2.1253 1.3969 32 1 2.0698 1.5875 2.1492 33 1 1.9982 3.1544 1.3071 34 1 3.5829 3.4465 -0.9206 35 1 3.8528 3.3503 0.8362 36 1 6.0006 2.0555 -0.4545 37 1 4.4593 5.2978 -0.0971 38 1 5.6633 7.4397 -0.1847 39 1 8.0899 7.4819 -0.5553 40 1 11.9718 7.4260 -1.7916 41 1 8.1164 3.1777 -0.7326 42 1 5.6949 -0.1803 -0.0177 43 1 4.1774 -1.1081 0.0505 44 1 5.1940 -0.9564 1.5038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602681776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:34 Heat of formation + Delta-G solvation = -62.410787 kcal Electronic energy + Delta-G solvation = -21502.707780 eV Core-core repulsion = 18418.216198 eV Total energy + Delta-G solvation = -3084.491582 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.38098 -39.48514 -36.54043 -36.36000 -35.03641 -32.13806 -32.03307 -30.08627 -28.17871 -27.08262 -27.01540 -25.88539 -23.15029 -22.78557 -21.71471 -20.81193 -19.31042 -17.79652 -17.58682 -17.21397 -16.80647 -16.36373 -16.07116 -15.61680 -15.41903 -15.02428 -14.77320 -14.52790 -14.34960 -14.19689 -14.12332 -13.68231 -13.47693 -13.22873 -12.87635 -12.70720 -12.64940 -12.54950 -12.51788 -12.27490 -11.93918 -11.85770 -11.58869 -11.44593 -11.38159 -11.30537 -11.04402 -10.54614 -10.39559 -9.48702 -8.88729 -8.07470 -6.49247 0.86865 1.10729 1.30004 1.44957 1.53937 2.17495 2.64510 2.68897 2.83835 3.63311 3.71784 3.91812 3.98479 4.19793 4.29886 4.36995 4.49947 4.54082 4.59261 4.61222 4.65843 4.71275 4.74836 4.76503 4.82632 4.87435 4.89622 5.01194 5.09478 5.12344 5.18572 5.22379 5.24156 5.26418 5.52578 5.54780 5.55558 5.78109 5.87396 6.00385 6.10378 6.28414 6.38359 6.70233 6.83315 6.89735 7.08053 8.20176 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033860 B = 0.003517 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.740340 B = 7959.021077 C = 8438.272460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.095 4.095 4 H 0.090 0.910 5 C -0.144 4.144 6 C 0.088 3.912 7 H 0.074 0.926 8 C 0.123 3.877 9 N -0.748 5.748 10 C 0.244 3.756 11 C -0.293 4.293 12 C -0.046 4.046 13 C -0.300 4.300 14 C 0.108 3.892 15 C -0.489 4.489 16 H 0.051 0.949 17 C 0.048 3.952 18 N -0.851 5.851 19 Si 0.975 3.025 20 H -0.259 1.259 21 H -0.279 1.279 22 H -0.256 1.256 23 C -0.300 4.300 24 O -0.391 6.391 25 C 0.025 3.975 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.393 0.607 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.293 0.707 41 H 0.091 0.909 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.162 -11.136 0.524 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.114 4.114 4 H 0.108 0.892 5 C -0.201 4.201 6 C 0.030 3.970 7 H 0.092 0.908 8 C -0.002 4.002 9 N -0.379 5.379 10 C 0.141 3.859 11 C -0.315 4.315 12 C -0.064 4.064 13 C -0.320 4.320 14 C 0.105 3.895 15 C -0.518 4.518 16 H 0.069 0.931 17 C -0.166 4.166 18 N -0.478 5.478 19 Si 0.799 3.201 20 H -0.184 1.184 21 H -0.206 1.206 22 H -0.180 1.180 23 C -0.325 4.325 24 O -0.310 6.310 25 C -0.071 4.071 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.227 0.773 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.123 -10.942 0.725 23.800 hybrid contribution 0.917 -0.025 -0.482 1.036 sum -20.206 -10.967 0.242 22.992 Atomic orbital electron populations 1.21802 0.94914 1.01956 1.02170 1.21485 0.96605 0.95188 1.01853 1.21460 0.92362 0.97863 0.99722 0.89211 1.21811 1.01461 0.99971 0.96858 1.22426 0.93874 0.90876 0.89860 0.90825 1.21697 0.80472 0.97107 1.00882 1.44491 1.07122 1.04628 1.81640 1.17631 0.90308 0.86670 0.91261 1.20315 0.99131 0.90765 1.21327 1.20753 0.93194 0.97655 0.94816 1.20984 0.95697 0.96556 1.18772 1.17589 0.92304 0.92073 0.87568 1.19460 0.92171 1.03193 1.37010 0.93072 1.26851 0.96090 0.98147 0.95497 1.69744 1.13455 1.28288 1.36271 0.85384 0.78712 0.78325 0.77725 1.18424 1.20612 1.17972 1.20460 0.92717 0.96805 1.22489 1.87936 1.71479 1.39136 1.32468 1.22985 0.95439 0.86837 1.01882 0.92343 0.92375 0.92369 0.92000 0.92190 0.91427 0.93148 0.93079 0.91154 0.92479 0.77302 0.85873 0.85582 0.88882 0.89636 0.89117 0.94502 0.92475 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 71.98 0.70 -1.06 16 2 C -0.11 -1.58 5.05 30.59 0.15 -1.42 16 3 C -0.10 -1.53 2.28 -10.79 -0.02 -1.55 16 4 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.14 -2.47 8.45 71.98 0.61 -1.86 16 6 C 0.09 1.77 2.02 30.60 0.06 1.83 16 7 H 0.07 1.37 7.61 -2.39 -0.02 1.35 16 8 C 0.12 3.15 4.09 86.38 0.35 3.50 16 9 N -0.75 -24.61 5.67 -339.58 -1.92 -26.54 16 10 C 0.24 10.24 6.64 38.16 0.25 10.50 16 11 C -0.29 -11.78 9.32 22.59 0.21 -11.57 16 12 C -0.05 -1.95 10.02 22.20 0.22 -1.73 16 13 C -0.30 -15.00 7.25 22.76 0.16 -14.84 16 14 C 0.11 5.86 5.15 -21.31 -0.11 5.75 16 15 C -0.49 -28.97 9.57 23.46 0.22 -28.75 16 16 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 17 C 0.05 2.72 5.40 85.25 0.46 3.18 16 18 N -0.85 -48.48 13.93 21.82 0.30 -48.17 16 19 Si 0.97 45.12 24.51 68.60 1.68 46.80 16 20 H -0.26 -11.34 6.59 99.48 0.66 -10.68 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.26 -12.14 6.94 99.48 0.69 -11.45 16 23 C -0.30 -14.81 9.63 22.85 0.22 -14.59 16 24 O -0.39 -8.82 9.00 -148.98 -1.34 -10.16 16 25 C 0.02 0.44 10.70 113.37 1.21 1.65 16 26 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.06 0.68 6.57 -2.39 -0.02 0.66 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.94 7.84 -2.39 -0.02 0.92 16 31 H 0.07 0.96 6.57 -2.38 -0.02 0.94 16 32 H 0.05 1.00 7.68 -2.39 -0.02 0.98 16 33 H 0.05 0.94 6.53 -2.38 -0.02 0.93 16 34 H 0.07 1.71 7.89 -2.39 -0.02 1.69 16 35 H 0.06 1.58 6.51 -2.39 -0.02 1.56 16 36 H 0.39 12.19 8.08 -92.70 -0.75 11.44 16 37 H 0.12 4.17 6.70 -2.91 -0.02 4.15 16 38 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.09 4.66 4.48 -2.91 -0.01 4.65 16 40 H 0.29 14.94 8.30 -92.71 -0.77 14.18 16 41 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.04 0.67 7.76 -2.39 -0.02 0.65 16 43 H 0.06 0.79 8.01 -2.38 -0.02 0.77 16 44 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -64.45 344.37 3.59 -60.86 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.16 Total: 28.17 kcal Atomic # 6 Polarization: -55.67 SS G_CDS: 4.71 Total: -50.97 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.62 Total: -74.71 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.34 Total: -10.16 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.68 Total: 46.80 kcal Total: -64.45 3.59 -60.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602681776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.551 kcal (2) G-P(sol) polarization free energy of solvation -64.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds