Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 C 1.38237 * 119.99747 * 59.72563 * 4 2 1 6 6 C 1.38240 * 119.99788 * 179.81066 * 5 4 2 7 7 C 1.38236 * 119.99657 * 0.39831 * 6 5 4 8 8 C 1.38230 * 120.00403 * 359.85459 * 7 6 5 9 9 C 1.38232 * 120.00112 * 240.00114 * 4 2 1 10 10 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 11 11 H 1.08992 * 109.47399 * 300.00166 * 10 2 1 12 12 C 1.53002 * 109.47233 * 179.97438 * 10 2 1 13 13 O 1.42903 * 109.47251 * 305.00398 * 12 10 2 14 14 N 1.46901 * 109.46769 * 60.00469 * 10 2 1 15 15 C 1.46900 * 110.99890 * 204.99887 * 14 10 2 16 16 C 1.52999 * 109.47165 * 180.02562 * 15 14 10 17 17 C 1.53004 * 109.47208 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47255 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99915 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99807 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00116 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99656 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47193 * 60.00442 * 22 20 18 24 24 H 1.48503 * 109.46755 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47361 * 299.99859 * 22 20 18 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.08003 * 120.00234 * 0.02562 * 5 4 2 30 30 H 1.07995 * 119.99993 * 180.23158 * 6 5 4 31 31 H 1.08005 * 119.99783 * 179.83592 * 7 6 5 32 32 H 1.08000 * 120.00473 * 179.97438 * 8 7 6 33 33 H 1.08005 * 119.99991 * 359.97438 * 9 4 2 34 34 H 1.09002 * 109.46816 * 65.00060 * 12 10 2 35 35 H 1.08996 * 109.47073 * 185.00312 * 12 10 2 36 36 H 0.96694 * 114.00531 * 179.97438 * 13 12 10 37 37 H 1.00902 * 111.00452 * 328.95177 * 14 10 2 38 38 H 1.09005 * 109.46934 * 299.99673 * 15 14 10 39 39 H 1.09002 * 109.47391 * 59.99776 * 15 14 10 40 40 H 1.08994 * 109.47309 * 299.99521 * 16 15 14 41 41 H 1.08995 * 109.47559 * 60.00157 * 16 15 14 42 42 H 1.09004 * 109.47010 * 300.00545 * 17 16 15 43 43 H 1.09004 * 109.46733 * 59.99626 * 17 16 15 44 44 H 0.97001 * 119.99910 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6936 -2.0322 1.4521 6 6 2.1576 -2.6850 2.5788 7 6 2.9535 -2.0136 3.4881 8 6 3.2878 -0.6903 3.2691 9 6 2.8270 -0.0386 2.1405 10 6 2.0401 -0.7213 -1.2492 11 1 1.6768 -1.7489 -1.2492 12 6 3.5701 -0.7208 -1.2495 13 8 4.0460 0.6216 -1.1324 14 7 1.5504 -0.0288 -2.4486 15 6 1.4877 -0.9439 -3.5961 16 6 0.9752 -0.1881 -4.8237 17 6 0.9104 -1.1410 -6.0190 18 6 0.4050 -0.3968 -7.2280 19 1 0.1546 0.6509 -7.1514 20 6 0.2613 -1.0538 -8.4316 21 7 0.5657 -2.3298 -8.5247 22 14 -0.3659 -0.1314 -9.9300 23 1 0.5552 0.9909 -10.2418 24 1 -0.4298 -1.0566 -11.0898 25 1 -1.7221 0.4045 -9.6497 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.0694 -2.5559 0.7432 30 1 1.8961 -3.7187 2.7501 31 1 3.3138 -2.5228 4.3697 32 1 3.9092 -0.1656 3.9797 33 1 3.0883 0.9953 1.9693 34 1 3.9337 -1.3099 -0.4076 35 1 3.9333 -1.1551 -2.1809 36 1 5.0099 0.6980 -1.1255 37 1 0.6528 0.3993 -2.2780 38 1 2.4831 -1.3376 -3.8017 39 1 0.8113 -1.7675 -3.3675 40 1 -0.0201 0.2059 -4.6185 41 1 1.6519 0.6352 -5.0522 42 1 1.9059 -1.5348 -6.2241 43 1 0.2339 -1.9647 -5.7907 44 1 0.4642 -2.7921 -9.3714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613390025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = -46.454558 kcal Electronic energy + Delta-G solvation = -21258.459759 eV Core-core repulsion = 18174.660091 eV Total energy + Delta-G solvation = -3083.799668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.96244 -37.85723 -35.71429 -34.55637 -32.96170 -31.10071 -30.99542 -29.30500 -28.32063 -25.76102 -24.01541 -22.86280 -22.68375 -21.37934 -20.29349 -19.42611 -17.44661 -16.85246 -16.32813 -16.02387 -15.48293 -15.06883 -14.66066 -14.38871 -14.27704 -13.95337 -13.59066 -13.42417 -13.17350 -13.01537 -12.68267 -12.31692 -12.30505 -12.08823 -11.68155 -11.48461 -11.32897 -10.93161 -10.87757 -10.78213 -10.60220 -10.51667 -10.40223 -9.82089 -9.63977 -9.29268 -9.07581 -9.03532 -8.81257 -8.31187 -8.05536 -5.96618 -3.98521 1.20400 1.24879 3.36033 3.39798 3.42901 3.62358 4.25174 4.44925 4.50316 4.61068 4.70976 4.84168 4.89175 4.96125 5.02935 5.28732 5.34330 5.38133 5.39073 5.48916 5.58399 5.61711 5.67901 5.79670 5.85042 5.89388 5.89938 5.96628 6.04934 6.15732 6.33092 6.35224 6.36778 6.57880 6.76826 6.83157 6.85692 7.18338 7.40904 7.69885 7.72493 7.79293 7.87662 8.04089 8.47709 9.08571 9.65228 11.14871 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036132 B = 0.002865 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.743360 B = 9771.504108 C = 9883.680585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.052 4.052 3 H 0.096 0.904 4 C -0.064 4.064 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.129 4.129 8 C -0.121 4.121 9 C -0.110 4.110 10 C 0.098 3.902 11 H 0.053 0.947 12 C 0.091 3.909 13 O -0.554 6.554 14 N -0.678 5.678 15 C 0.059 3.941 16 C -0.106 4.106 17 C 0.023 3.977 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.368 0.632 37 H 0.339 0.661 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 1.333 24.663 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.071 4.071 3 H 0.115 0.885 4 C -0.064 4.064 5 C -0.137 4.137 6 C -0.138 4.138 7 C -0.148 4.148 8 C -0.140 4.140 9 C -0.128 4.128 10 C -0.013 4.013 11 H 0.070 0.930 12 C 0.012 3.988 13 O -0.357 6.357 14 N -0.312 5.312 15 C -0.070 4.070 16 C -0.144 4.144 17 C -0.015 4.015 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.214 0.786 37 H 0.159 0.841 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.100 1.557 24.364 24.940 hybrid contribution -0.462 -0.437 -0.685 0.935 sum 4.638 1.119 23.678 24.154 Atomic orbital electron populations 1.21942 0.94539 1.02104 1.02246 1.20245 0.95268 1.00707 0.90832 0.88541 1.19831 0.96821 0.93982 0.95776 1.21061 1.00367 0.94535 0.97719 1.21125 0.98184 0.99799 0.94690 1.21113 0.99177 0.94976 0.99487 1.21139 1.00201 0.94954 0.97660 1.21106 0.97564 1.00094 0.94033 1.21583 0.93843 0.96000 0.89824 0.92969 1.22131 0.94205 0.83751 0.98708 1.86544 1.25427 1.26792 1.96986 1.60567 1.33510 1.33551 1.03541 1.22186 1.00229 0.93677 0.90884 1.21607 0.99264 0.99471 0.94061 1.19057 0.97017 0.94202 0.91197 1.21232 1.43473 0.96397 0.94583 0.92710 1.25030 0.95668 0.94890 0.98948 1.69958 1.48959 1.09009 1.25783 0.86653 0.79437 0.79612 0.82274 1.20210 1.21333 1.20273 0.92603 0.92190 0.91728 0.86257 0.86286 0.86444 0.86326 0.85962 0.94250 0.93773 0.78643 0.84058 0.91736 0.95943 0.93713 0.92501 0.96662 0.96882 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.77 37.16 0.33 -1.22 16 2 C -0.05 -0.58 2.09 -91.77 -0.19 -0.77 16 3 H 0.10 1.20 7.29 -51.93 -0.38 0.82 16 4 C -0.06 -0.67 3.61 -104.62 -0.38 -1.05 16 5 C -0.12 -1.20 8.71 -39.58 -0.34 -1.55 16 6 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 7 C -0.13 -1.12 10.05 -39.58 -0.40 -1.51 16 8 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 9 C -0.11 -1.09 9.67 -39.58 -0.38 -1.47 16 10 C 0.10 1.26 1.85 -67.71 -0.13 1.13 16 11 H 0.05 0.68 7.06 -51.93 -0.37 0.31 16 12 C 0.09 1.13 6.46 37.16 0.24 1.37 16 13 O -0.55 -6.91 12.73 -35.23 -0.45 -7.36 16 14 N -0.68 -10.36 6.26 -106.72 -0.67 -11.03 16 15 C 0.06 1.05 5.48 -3.82 -0.02 1.02 16 16 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 19 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 22 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H 0.05 0.56 7.38 -51.93 -0.38 0.17 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.68 6.21 -51.93 -0.32 0.35 16 29 H 0.12 1.14 7.10 -52.48 -0.37 0.77 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 1.13 7.95 -52.48 -0.42 0.71 16 34 H 0.04 0.45 7.40 -51.93 -0.38 0.07 16 35 H 0.04 0.59 7.35 -51.93 -0.38 0.21 16 36 H 0.37 3.10 9.12 45.56 0.42 3.51 16 37 H 0.34 4.89 6.17 -39.29 -0.24 4.65 16 38 H 0.06 1.18 7.36 -51.93 -0.38 0.80 16 39 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -32.08 354.25 -9.39 -41.46 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.56 Total: 4.03 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -2.77 Total: -22.78 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.07 Total: -37.71 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.45 Total: -7.36 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.08 -9.39 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613390025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.991 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds