Wall clock time and date at job start Mon Mar 30 2020 01:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47059 * 2 1 4 4 H 1.09001 * 109.46900 * 55.00399 * 3 2 1 5 5 C 1.52996 * 109.47491 * 295.00571 * 3 2 1 6 6 C 1.53003 * 109.47080 * 175.00035 * 3 2 1 7 7 N 1.46897 * 109.46985 * 184.94503 * 6 3 2 8 8 C 1.46910 * 110.99806 * 199.59625 * 7 6 3 9 9 C 1.46894 * 111.00164 * 75.64108 * 7 6 3 10 10 C 1.50703 * 109.47274 * 189.99481 * 9 7 6 11 11 C 1.38297 * 119.93263 * 269.72758 * 10 9 7 12 12 C 1.38107 * 120.06743 * 179.72328 * 11 10 9 13 13 C 1.38880 * 119.92886 * 0.57201 * 12 11 10 14 14 O 1.35746 * 120.06843 * 179.68439 * 13 12 11 15 15 C 1.34829 * 117.00123 * 185.89708 * 14 13 12 16 16 H 1.07999 * 119.99561 * 5.39277 * 15 14 13 17 17 C 1.38648 * 120.00375 * 185.39909 * 15 14 13 18 18 N 1.31559 * 119.99824 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00404 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46742 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47340 * 119.99521 * 19 17 15 22 22 H 1.48502 * 109.47033 * 239.99637 * 19 17 15 23 23 C 1.38879 * 119.86142 * 359.70237 * 13 12 11 24 24 C 1.38101 * 119.92981 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47023 * 299.99702 * 1 2 3 27 27 H 1.09000 * 109.47586 * 59.99612 * 1 2 3 28 28 H 1.09007 * 109.46893 * 240.00824 * 2 1 3 29 29 H 1.09000 * 109.47586 * 120.00388 * 2 1 3 30 30 H 1.09007 * 109.47133 * 295.25903 * 5 3 2 31 31 H 1.08998 * 109.47444 * 55.25497 * 5 3 2 32 32 H 1.08997 * 109.47291 * 175.25852 * 5 3 2 33 33 H 1.09004 * 109.46676 * 64.94443 * 6 3 2 34 34 H 1.09000 * 109.47534 * 304.94819 * 6 3 2 35 35 H 1.09003 * 109.46445 * 290.84004 * 8 7 6 36 36 H 1.08997 * 109.46856 * 50.83837 * 8 7 6 37 37 H 1.08997 * 109.47131 * 170.84408 * 8 7 6 38 38 H 1.08993 * 109.47302 * 309.99767 * 9 7 6 39 39 H 1.09000 * 109.46929 * 69.99783 * 9 7 6 40 40 H 1.07998 * 119.96955 * 359.97438 * 11 10 9 41 41 H 1.08001 * 120.03275 * 180.27289 * 12 11 10 42 42 H 0.96993 * 120.00088 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03451 * 179.97438 * 23 13 12 44 44 H 1.08004 * 119.96202 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1267 -1.3072 6 6 3.5648 1.4444 0.1257 7 7 4.0446 2.8277 0.2448 8 6 5.4709 2.9212 -0.0947 9 6 3.7874 3.3602 1.5894 10 6 4.0632 4.8417 1.6043 11 6 5.3274 5.3052 1.9197 12 6 5.5846 6.6621 1.9285 13 6 4.5691 7.5618 1.6319 14 8 4.8172 8.8963 1.6460 15 6 3.7621 9.7170 1.4697 16 1 2.7639 9.3086 1.4130 17 6 3.9584 11.0852 1.3610 18 7 5.1743 11.5828 1.4304 19 14 2.4967 12.2221 1.1159 20 1 1.2478 11.4199 1.0711 21 1 2.4256 13.1869 2.2426 22 1 2.6546 12.9632 -0.1612 23 6 3.2992 7.0934 1.3211 24 6 3.0498 5.7351 1.3085 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.1371 1.6392 -2.1431 31 1 0.5556 2.0512 -1.4377 32 1 1.9243 3.1770 -1.2723 33 1 4.0028 0.9827 -0.7593 34 1 3.8571 0.8809 1.0118 35 1 6.0610 2.4259 0.6764 36 1 5.6482 2.4372 -1.0550 37 1 5.7615 3.9699 -0.1570 38 1 2.7463 3.1817 1.8579 39 1 4.4385 2.8623 2.3080 40 1 6.1154 4.6053 2.1553 41 1 6.5732 7.0233 2.1706 42 1 5.3118 12.5398 1.3540 43 1 2.5073 7.7905 1.0904 44 1 2.0625 5.3702 1.0665 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732205963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:14 Heat of formation + Delta-G solvation = -17.182361 kcal Electronic energy + Delta-G solvation = -21302.720680 eV Core-core repulsion = 18220.190350 eV Total energy + Delta-G solvation = -3082.530330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.23352 -38.23593 -36.57208 -35.04201 -32.29229 -30.43812 -30.20169 -29.49893 -27.08487 -26.22664 -25.09093 -23.97522 -21.93428 -21.61461 -20.39973 -19.67727 -17.95432 -16.92311 -15.77485 -15.39503 -15.23444 -14.83925 -14.55291 -14.45208 -13.92412 -13.58237 -13.49278 -13.39000 -13.17294 -12.70353 -12.61914 -12.40982 -12.07595 -11.96974 -11.72665 -11.65235 -11.50430 -11.35097 -11.23664 -10.83409 -10.71772 -10.66052 -10.59832 -10.47759 -10.37082 -10.34252 -9.31881 -8.80982 -8.18973 -8.09553 -7.13111 -6.43046 -4.01505 2.25885 2.33691 3.13649 3.15353 3.20933 3.98699 4.04604 4.60652 4.75441 4.82666 4.93156 5.13009 5.13793 5.23318 5.30286 5.38002 5.42188 5.44922 5.52365 5.57641 5.64708 5.69529 5.73693 5.78508 5.84588 5.91186 5.92580 5.95472 6.00513 6.11324 6.15063 6.25866 6.32528 6.45971 6.48341 6.74254 6.94788 7.08874 7.15306 7.22356 7.33117 7.46504 7.48656 7.87398 8.02557 9.03064 9.74048 10.75305 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024535 B = 0.003437 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.941800 B = 8145.385566 C = 8939.720185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.088 4.088 4 H 0.070 0.930 5 C -0.138 4.138 6 C 0.058 3.942 7 N -0.534 5.534 8 C 0.026 3.974 9 C 0.112 3.888 10 C -0.177 4.177 11 C -0.068 4.068 12 C -0.194 4.194 13 C 0.155 3.845 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.234 4.234 24 C -0.050 4.050 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.019 0.981 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 -19.684 -2.431 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.089 0.911 5 C -0.195 4.195 6 C -0.070 4.070 7 N -0.257 5.257 8 C -0.122 4.122 9 C -0.014 4.014 10 C -0.178 4.178 11 C -0.087 4.087 12 C -0.213 4.213 13 C 0.101 3.899 14 O -0.083 6.083 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.254 4.254 24 C -0.069 4.069 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.370 -19.033 -2.746 19.966 hybrid contribution -0.245 0.097 0.401 0.480 sum -5.614 -18.935 -2.345 19.889 Atomic orbital electron populations 1.21812 0.95879 1.01229 1.02095 1.21553 0.95971 0.96640 1.01577 1.21160 0.94691 0.95382 0.99418 0.91142 1.21743 0.99919 1.01881 0.95980 1.22196 0.95412 0.89218 1.00149 1.61999 1.17271 1.18792 1.27686 1.22407 0.87530 1.02971 0.99296 1.20850 1.00354 0.92267 0.87960 1.19067 0.94495 0.93473 1.10767 1.20475 0.95492 0.94076 0.98667 1.20160 0.98684 0.91914 1.10590 1.19398 0.92826 0.85369 0.92278 1.83988 1.35684 1.10643 1.77986 1.21364 0.86330 0.87280 1.51618 0.89066 1.25285 0.98165 0.96487 0.96636 1.70048 1.20310 1.13371 1.46168 0.85656 0.79850 0.79705 0.78282 1.19079 1.20172 1.20160 1.21161 0.97909 0.95693 1.10610 1.20546 0.97587 0.92326 0.96439 0.93124 0.92788 0.92342 0.92186 0.92404 0.93488 0.93384 0.91289 0.91321 0.95218 0.96215 0.92200 0.90419 0.90925 0.95191 0.87619 0.86714 0.92113 0.85670 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -0.98 5.40 -26.73 -0.14 -1.12 16 3 C -0.09 -0.86 2.44 -90.62 -0.22 -1.09 16 4 H 0.07 0.76 6.66 -51.93 -0.35 0.42 16 5 C -0.14 -1.44 8.88 37.16 0.33 -1.11 16 6 C 0.06 0.62 4.39 -3.82 -0.02 0.60 16 7 N -0.53 -6.90 4.22 -244.37 -1.03 -7.93 16 8 C 0.03 0.33 9.02 60.07 0.54 0.87 16 9 C 0.11 1.56 4.94 -4.98 -0.02 1.53 16 10 C -0.18 -3.03 4.88 -104.58 -0.51 -3.54 16 11 C -0.07 -1.22 8.10 -39.61 -0.32 -1.54 16 12 C -0.19 -4.13 9.99 -39.39 -0.39 -4.53 16 13 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 14 O -0.18 -5.18 9.76 0.06 0.00 -5.18 16 15 C -0.39 -10.99 9.44 30.88 0.29 -10.70 16 16 H 0.09 2.39 5.30 -52.49 -0.28 2.12 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 19 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 C -0.23 -5.16 9.13 -39.39 -0.36 -5.52 16 24 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.06 0.45 6.47 -51.93 -0.34 0.12 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.46 6.35 -51.93 -0.33 0.13 16 32 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 33 H 0.07 0.69 7.75 -51.93 -0.40 0.28 16 34 H 0.03 0.31 8.00 -51.93 -0.42 -0.11 16 35 H 0.02 0.23 8.08 -51.93 -0.42 -0.19 16 36 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 37 H 0.08 1.12 6.52 -51.93 -0.34 0.78 16 38 H 0.07 0.96 6.50 -51.93 -0.34 0.62 16 39 H 0.03 0.40 8.01 -51.93 -0.42 -0.02 16 40 H 0.11 1.61 8.04 -52.49 -0.42 1.19 16 41 H 0.11 2.37 8.06 -52.49 -0.42 1.94 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.13 2.78 5.72 -52.49 -0.30 2.48 16 44 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -29.82 350.93 -8.47 -38.29 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.25 Total: 2.45 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -1.21 Total: -23.80 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: -0.27 Total: -32.71 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.82 -8.47 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732205963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.103 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds