Wall clock time and date at job start Mon Mar 30 2020 02:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47512 * 2 1 4 4 N 1.46903 * 109.47165 * 120.00539 * 2 1 3 5 5 C 1.46899 * 110.99769 * 275.00037 * 4 2 1 6 6 C 1.52996 * 109.47330 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47383 * 59.99930 * 6 5 4 8 8 O 1.42902 * 109.46925 * 299.99355 * 6 5 4 9 9 C 1.50701 * 109.47283 * 179.97438 * 6 5 4 10 10 H 1.08004 * 120.00091 * 359.97438 * 9 6 5 11 11 C 1.37873 * 120.00423 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99701 * 359.97438 * 11 9 6 13 13 Si 1.86796 * 120.00553 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.46866 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47434 * 119.99742 * 13 11 9 16 16 H 1.48499 * 109.47012 * 240.00157 * 13 11 9 17 17 C 1.53006 * 109.47086 * 239.99768 * 2 1 3 18 18 C 1.53007 * 109.46842 * 54.01634 * 17 2 1 19 19 C 1.52993 * 109.47405 * 294.01563 * 17 2 1 20 20 C 1.50701 * 109.46763 * 174.01308 * 17 2 1 21 21 C 1.38241 * 119.99599 * 174.06181 * 20 17 2 22 22 C 1.38235 * 119.99811 * 180.02562 * 21 20 17 23 23 C 1.38232 * 120.00151 * 359.95623 * 22 21 20 24 24 C 1.38241 * 119.99839 * 0.27890 * 23 22 21 25 25 C 1.38230 * 120.00549 * 354.03880 * 20 17 2 26 26 H 1.08996 * 109.47233 * 293.91389 * 1 2 3 27 27 H 1.09001 * 109.47098 * 53.91739 * 1 2 3 28 28 H 1.09001 * 109.47068 * 173.92045 * 1 2 3 29 29 H 1.00894 * 111.00078 * 151.04302 * 4 2 1 30 30 H 1.09007 * 109.47249 * 300.00090 * 5 4 2 31 31 H 1.09004 * 109.47299 * 59.99744 * 5 4 2 32 32 H 0.96699 * 114.00506 * 300.00552 * 8 6 5 33 33 H 0.97001 * 120.00491 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.46860 * 179.97438 * 18 17 2 35 35 H 1.08997 * 109.47194 * 299.99889 * 18 17 2 36 36 H 1.08996 * 109.46733 * 59.99872 * 18 17 2 37 37 H 1.08999 * 109.47160 * 299.99959 * 19 17 2 38 38 H 1.09006 * 109.47201 * 59.99982 * 19 17 2 39 39 H 1.09000 * 109.47377 * 179.97438 * 19 17 2 40 40 H 1.07996 * 119.99881 * 359.97427 * 21 20 17 41 41 H 1.08005 * 119.99851 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00024 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.99834 * 179.72659 * 24 23 22 44 44 H 1.08007 * 119.99446 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0824 0.2224 2.3469 6 6 2.5962 -0.5331 3.5741 7 1 3.5917 -0.9264 3.3683 8 8 1.7098 -1.6131 3.8742 9 6 2.6612 0.4058 4.7512 10 1 2.3660 1.4382 4.6354 11 6 3.0975 -0.0531 5.9759 12 7 3.4565 -1.3104 6.1171 13 14 3.1787 1.1107 7.4347 14 1 2.7244 2.4612 7.0163 15 1 2.2995 0.6064 8.5199 16 1 4.5774 1.1901 7.9272 17 6 2.0400 -0.7213 -1.2493 18 6 1.4108 -0.0921 -2.4940 19 6 1.6565 -2.2006 -1.1763 20 6 3.5397 -0.5942 -1.3255 21 6 4.2418 -1.2714 -2.3051 22 6 5.6175 -1.1553 -2.3748 23 6 6.2910 -0.3613 -1.4655 24 6 5.5894 0.3120 -0.4829 25 6 4.2133 0.1998 -0.4164 26 1 -0.3633 0.4166 0.9394 27 1 -0.3633 0.6052 -0.8305 28 1 -0.3633 -1.0219 -0.1088 29 1 2.9172 -1.1206 1.0286 30 1 2.7588 1.0461 2.1183 31 1 1.0870 0.6161 2.5525 32 1 0.8039 -1.3361 4.0681 33 1 3.7638 -1.6334 6.9786 34 1 1.7745 -0.6057 -3.3840 35 1 0.3262 -0.1840 -2.4388 36 1 1.6841 0.9618 -2.5459 37 1 2.1047 -2.6489 -0.2896 38 1 0.5718 -2.2925 -1.1212 39 1 2.0195 -2.7144 -2.0665 40 1 3.7155 -1.8918 -3.0154 41 1 6.1660 -1.6847 -3.1399 42 1 7.3659 -0.2710 -1.5197 43 1 6.1161 0.9287 0.2301 44 1 3.6647 0.7288 0.3490 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809578045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:21 Heat of formation + Delta-G solvation = -32.488976 kcal Electronic energy + Delta-G solvation = -22440.897234 eV Core-core repulsion = 19357.703159 eV Total energy + Delta-G solvation = -3083.194075 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22638 -37.44566 -35.80032 -33.35395 -32.03321 -30.77647 -30.53737 -28.74343 -27.65484 -26.83663 -24.77032 -23.27407 -22.38917 -21.30055 -20.47839 -18.54391 -17.04450 -16.84902 -15.89262 -15.02177 -14.87489 -14.57626 -14.42737 -14.19961 -13.93825 -13.62321 -13.40458 -13.25404 -12.77734 -12.60495 -12.31509 -12.26653 -11.96616 -11.82920 -11.50236 -11.33787 -11.16445 -11.02570 -11.01508 -10.90467 -10.72897 -10.59426 -10.35447 -10.08668 -9.94154 -8.95596 -8.82206 -8.59462 -8.55042 -8.01151 -7.66666 -5.97422 -4.15689 1.44984 1.48983 3.27851 3.36124 3.39216 3.87321 4.38447 4.63455 4.65386 4.79110 5.06169 5.11858 5.19339 5.28564 5.29829 5.32823 5.52078 5.58815 5.60393 5.69731 5.77870 5.89408 5.96553 5.97890 6.06577 6.10337 6.11615 6.17713 6.21253 6.29108 6.34322 6.48463 6.56918 6.57642 6.63362 6.66252 6.75851 6.91268 7.09586 7.69753 7.74691 7.89086 8.04164 8.25074 8.88704 9.50226 9.66879 11.06709 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.004916 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.493416 B = 5694.043739 C = 6510.633882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.090 3.910 3 H 0.038 0.962 4 N -0.674 5.674 5 C 0.034 3.966 6 C 0.236 3.764 7 H 0.050 0.950 8 O -0.554 6.554 9 C -0.572 4.572 10 H 0.054 0.946 11 C 0.080 3.920 12 N -0.858 5.858 13 Si 0.887 3.113 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.027 4.027 18 C -0.136 4.136 19 C -0.132 4.132 20 C -0.067 4.067 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.112 4.112 25 C -0.125 4.125 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.339 0.661 30 H 0.018 0.982 31 H 0.060 0.940 32 H 0.343 0.657 33 H 0.259 0.741 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 1.804 -18.056 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 H 0.056 0.944 4 N -0.307 5.307 5 C -0.095 4.095 6 C 0.178 3.822 7 H 0.067 0.933 8 O -0.356 6.356 9 C -0.611 4.611 10 H 0.072 0.928 11 C -0.126 4.126 12 N -0.494 5.494 13 Si 0.715 3.285 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.027 4.027 18 C -0.194 4.194 19 C -0.189 4.189 20 C -0.067 4.067 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.130 4.130 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.186 0.814 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.510 1.054 -17.867 17.906 hybrid contribution 0.548 1.649 0.819 1.921 sum 0.038 2.703 -17.048 17.261 Atomic orbital electron populations 1.21872 0.94883 1.01990 1.00956 1.21532 0.95794 0.95328 0.89397 0.94443 1.60593 1.33743 1.33190 1.03190 1.22936 0.99949 0.94026 0.92574 1.19274 0.89710 0.85046 0.88199 0.93273 1.86554 1.21386 1.35636 1.91984 1.21684 1.47219 0.96651 0.95508 0.92753 1.25023 0.94102 0.94762 0.98753 1.70097 1.41411 1.13893 1.24008 0.86646 0.77712 0.81284 0.82894 1.19777 1.20870 1.20947 1.19705 0.90240 0.97241 0.95548 1.21911 1.00817 1.00437 0.96240 1.21829 1.01759 0.93415 1.01893 1.19886 0.95162 0.96478 0.95176 1.20930 0.94023 0.99879 0.98665 1.21081 0.94421 0.99178 0.99257 1.21113 0.99673 0.98010 0.95832 1.21194 0.94344 0.99419 0.98088 1.21404 0.94674 0.99123 0.99101 0.92585 0.93209 0.91890 0.84060 0.96367 0.92125 0.81445 0.93101 0.92679 0.91728 0.92831 0.91095 0.92022 0.93462 0.86337 0.86451 0.86431 0.86066 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.61 37.16 0.32 -1.54 16 2 C 0.09 1.29 1.27 -67.71 -0.09 1.21 16 3 H 0.04 0.57 6.48 -51.93 -0.34 0.23 16 4 N -0.67 -11.90 4.98 -106.72 -0.53 -12.43 16 5 C 0.03 0.70 4.80 -3.83 -0.02 0.68 16 6 C 0.24 6.00 3.03 -27.88 -0.08 5.91 16 7 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 8 O -0.55 -14.58 12.59 -35.23 -0.44 -15.02 16 9 C -0.57 -15.77 8.76 -34.44 -0.30 -16.07 16 10 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 11 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 12 N -0.86 -25.66 12.84 55.43 0.71 -24.95 16 13 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 C -0.03 -0.34 0.40 -155.66 -0.06 -0.40 16 18 C -0.14 -1.43 7.83 37.16 0.29 -1.14 16 19 C -0.13 -1.64 7.76 37.15 0.29 -1.36 16 20 C -0.07 -0.89 4.27 -104.62 -0.45 -1.34 16 21 C -0.12 -1.41 8.77 -39.58 -0.35 -1.75 16 22 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 23 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 24 C -0.11 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.13 -1.83 7.74 -39.59 -0.31 -2.13 16 26 H 0.06 0.81 7.34 -51.93 -0.38 0.43 16 27 H 0.05 0.56 6.71 -51.93 -0.35 0.21 16 28 H 0.06 0.83 6.34 -51.93 -0.33 0.50 16 29 H 0.34 6.27 5.83 -39.29 -0.23 6.05 16 30 H 0.02 0.37 6.95 -51.92 -0.36 0.01 16 31 H 0.06 1.24 7.35 -51.93 -0.38 0.86 16 32 H 0.34 8.17 9.04 45.56 0.41 8.58 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.05 0.52 7.76 -51.93 -0.40 0.12 16 35 H 0.06 0.62 6.47 -51.93 -0.34 0.28 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 1.05 7.11 -51.93 -0.37 0.68 16 38 H 0.06 0.74 6.48 -51.93 -0.34 0.40 16 39 H 0.05 0.51 7.08 -51.93 -0.37 0.14 16 40 H 0.12 1.21 7.11 -52.49 -0.37 0.84 16 41 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.13 2.00 4.01 -52.48 -0.21 1.79 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -30.20 338.61 -8.23 -38.43 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.01 Total: 14.05 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -2.04 Total: -21.44 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.18 Total: -37.39 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.44 Total: -15.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.20 -8.23 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809578045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.940 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds