Wall clock time and date at job start Mon Mar 30 2020 02:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47512 * 2 1 4 4 N 1.46903 * 109.47165 * 120.00539 * 2 1 3 5 5 C 1.46899 * 110.99769 * 275.00037 * 4 2 1 6 6 C 1.52996 * 109.47330 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47383 * 59.99930 * 6 5 4 8 8 O 1.42902 * 109.46925 * 299.99355 * 6 5 4 9 9 C 1.50701 * 109.47283 * 179.97438 * 6 5 4 10 10 H 1.08004 * 120.00091 * 359.97438 * 9 6 5 11 11 C 1.37873 * 120.00423 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99701 * 359.97438 * 11 9 6 13 13 Si 1.86796 * 120.00553 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.46866 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47434 * 119.99742 * 13 11 9 16 16 H 1.48499 * 109.47012 * 240.00157 * 13 11 9 17 17 C 1.53006 * 109.47086 * 239.99768 * 2 1 3 18 18 C 1.53007 * 109.46842 * 54.01634 * 17 2 1 19 19 C 1.52993 * 109.47405 * 294.01563 * 17 2 1 20 20 C 1.50701 * 109.46763 * 174.01308 * 17 2 1 21 21 C 1.38241 * 119.99599 * 174.06181 * 20 17 2 22 22 C 1.38235 * 119.99811 * 180.02562 * 21 20 17 23 23 C 1.38232 * 120.00151 * 359.95623 * 22 21 20 24 24 C 1.38241 * 119.99839 * 0.27890 * 23 22 21 25 25 C 1.38230 * 120.00549 * 354.03880 * 20 17 2 26 26 H 1.08996 * 109.47233 * 293.91389 * 1 2 3 27 27 H 1.09001 * 109.47098 * 53.91739 * 1 2 3 28 28 H 1.09001 * 109.47068 * 173.92045 * 1 2 3 29 29 H 1.00894 * 111.00078 * 151.04302 * 4 2 1 30 30 H 1.09007 * 109.47249 * 300.00090 * 5 4 2 31 31 H 1.09004 * 109.47299 * 59.99744 * 5 4 2 32 32 H 0.96699 * 114.00506 * 300.00552 * 8 6 5 33 33 H 0.97001 * 120.00491 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.46860 * 179.97438 * 18 17 2 35 35 H 1.08997 * 109.47194 * 299.99889 * 18 17 2 36 36 H 1.08996 * 109.46733 * 59.99872 * 18 17 2 37 37 H 1.08999 * 109.47160 * 299.99959 * 19 17 2 38 38 H 1.09006 * 109.47201 * 59.99982 * 19 17 2 39 39 H 1.09000 * 109.47377 * 179.97438 * 19 17 2 40 40 H 1.07996 * 119.99881 * 359.97427 * 21 20 17 41 41 H 1.08005 * 119.99851 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00024 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.99834 * 179.72659 * 24 23 22 44 44 H 1.08007 * 119.99446 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0824 0.2224 2.3469 6 6 2.5962 -0.5331 3.5741 7 1 3.5917 -0.9264 3.3683 8 8 1.7098 -1.6131 3.8742 9 6 2.6612 0.4058 4.7512 10 1 2.3660 1.4382 4.6354 11 6 3.0975 -0.0531 5.9759 12 7 3.4565 -1.3104 6.1171 13 14 3.1787 1.1107 7.4347 14 1 2.7244 2.4612 7.0163 15 1 2.2995 0.6064 8.5199 16 1 4.5774 1.1901 7.9272 17 6 2.0400 -0.7213 -1.2493 18 6 1.4108 -0.0921 -2.4940 19 6 1.6565 -2.2006 -1.1763 20 6 3.5397 -0.5942 -1.3255 21 6 4.2418 -1.2714 -2.3051 22 6 5.6175 -1.1553 -2.3748 23 6 6.2910 -0.3613 -1.4655 24 6 5.5894 0.3120 -0.4829 25 6 4.2133 0.1998 -0.4164 26 1 -0.3633 0.4166 0.9394 27 1 -0.3633 0.6052 -0.8305 28 1 -0.3633 -1.0219 -0.1088 29 1 2.9172 -1.1206 1.0286 30 1 2.7588 1.0461 2.1183 31 1 1.0870 0.6161 2.5525 32 1 0.8039 -1.3361 4.0681 33 1 3.7638 -1.6334 6.9786 34 1 1.7745 -0.6057 -3.3840 35 1 0.3262 -0.1840 -2.4388 36 1 1.6841 0.9618 -2.5459 37 1 2.1047 -2.6489 -0.2896 38 1 0.5718 -2.2925 -1.1212 39 1 2.0195 -2.7144 -2.0665 40 1 3.7155 -1.8918 -3.0154 41 1 6.1660 -1.6847 -3.1399 42 1 7.3659 -0.2710 -1.5197 43 1 6.1161 0.9287 0.2301 44 1 3.6647 0.7288 0.3490 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809578045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:20 Heat of formation + Delta-G solvation = -51.970641 kcal Electronic energy + Delta-G solvation = -22441.742023 eV Core-core repulsion = 19357.703159 eV Total energy + Delta-G solvation = -3084.038863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27516 -38.67143 -37.57106 -34.80832 -34.19850 -31.77749 -31.68585 -30.12457 -29.06058 -27.96916 -26.37622 -24.61815 -23.39046 -22.56193 -22.19686 -19.63807 -18.95850 -18.06370 -17.22176 -16.66814 -16.25312 -16.00504 -15.90838 -15.60317 -15.20413 -15.09716 -14.63899 -14.35075 -14.23797 -13.92749 -13.51868 -13.26781 -13.19332 -13.12171 -12.90324 -12.82450 -12.72004 -12.60973 -12.39566 -12.17381 -12.03961 -12.02816 -11.84253 -11.36598 -11.11342 -11.00283 -10.72535 -10.05761 -9.82924 -9.56806 -9.13627 -8.13928 -6.40169 0.47576 0.49954 1.38312 1.39363 1.51653 2.37647 2.89412 3.11898 3.34842 3.65059 3.69041 4.09944 4.13543 4.23227 4.23470 4.33177 4.35341 4.47944 4.51883 4.57785 4.60518 4.69399 4.73778 4.87309 4.91062 4.96595 5.02445 5.07281 5.11532 5.11991 5.18402 5.26263 5.28485 5.49049 5.56674 5.60142 5.63906 5.65311 5.74375 5.75973 6.05147 6.13803 6.28639 6.54189 6.74382 7.34253 7.61999 8.90827 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.004916 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.493416 B = 5694.043739 C = 6510.633882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.089 3.911 3 H 0.029 0.971 4 N -0.674 5.674 5 C 0.056 3.944 6 C 0.238 3.762 7 H 0.011 0.989 8 O -0.569 6.569 9 C -0.586 4.586 10 H 0.057 0.943 11 C 0.026 3.974 12 N -0.900 5.900 13 Si 0.960 3.040 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.279 1.279 17 C -0.021 4.021 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.076 4.076 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.149 4.149 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.333 0.667 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.352 0.648 33 H 0.261 0.739 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.119 0.881 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 2.159 -19.839 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.047 0.953 4 N -0.306 5.306 5 C -0.073 4.073 6 C 0.180 3.820 7 H 0.029 0.971 8 O -0.372 6.372 9 C -0.625 4.625 10 H 0.076 0.924 11 C -0.176 4.176 12 N -0.537 5.537 13 Si 0.785 3.215 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.205 1.205 17 C -0.021 4.021 18 C -0.190 4.190 19 C -0.185 4.185 20 C -0.076 4.076 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.167 4.167 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.959 1.425 -19.667 19.742 hybrid contribution 0.712 1.504 1.319 2.123 sum -0.247 2.929 -18.347 18.581 Atomic orbital electron populations 1.21858 0.93668 1.02539 1.01227 1.21631 0.96563 0.94866 0.89016 0.95295 1.60580 1.33309 1.32816 1.03888 1.22483 0.99445 0.93523 0.91866 1.19109 0.88284 0.84681 0.89955 0.97076 1.86494 1.22121 1.36296 1.92290 1.22055 1.46873 0.97064 0.96474 0.92445 1.25898 0.93555 0.96335 1.01848 1.70236 1.42614 1.15989 1.24857 0.85504 0.77809 0.79248 0.78962 1.18780 1.20339 1.20484 1.19674 0.89961 0.97151 0.95363 1.21890 1.01398 1.00209 0.95458 1.21793 1.01976 0.93248 1.01491 1.20025 0.95685 0.96516 0.95346 1.21226 0.94503 0.99549 0.98458 1.21477 0.94494 0.98434 0.99331 1.21405 1.00850 0.97541 0.95282 1.21346 0.94304 1.00339 0.99069 1.21351 0.95225 1.00476 0.99636 0.94154 0.90597 0.91664 0.84795 0.96698 0.91854 0.80354 0.93005 0.91033 0.90536 0.93124 0.93994 0.91399 0.91356 0.84012 0.83433 0.84299 0.86271 0.87687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.61 71.98 0.62 -2.81 16 2 C 0.09 2.54 1.27 44.92 0.06 2.60 16 3 H 0.03 0.89 6.48 -2.39 -0.02 0.88 16 4 N -0.67 -24.47 4.98 -491.55 -2.45 -26.92 16 5 C 0.06 2.38 4.80 86.30 0.41 2.79 16 6 C 0.24 12.57 3.03 29.85 0.09 12.66 16 7 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 8 O -0.57 -30.87 12.59 -148.98 -1.88 -32.75 16 9 C -0.59 -32.97 8.76 25.60 0.22 -32.74 16 10 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 11 C 0.03 1.48 5.40 84.65 0.46 1.94 16 12 N -0.90 -55.02 12.84 21.45 0.28 -54.74 16 13 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 C -0.02 -0.50 0.40 -52.93 -0.02 -0.52 16 18 C -0.13 -2.40 7.83 71.98 0.56 -1.84 16 19 C -0.13 -2.99 7.76 71.98 0.56 -2.43 16 20 C -0.08 -1.96 4.27 -19.87 -0.08 -2.04 16 21 C -0.12 -2.60 8.77 22.27 0.20 -2.41 16 22 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 23 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 24 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 25 C -0.15 -4.48 7.74 22.27 0.17 -4.31 16 26 H 0.04 1.14 7.34 -2.39 -0.02 1.12 16 27 H 0.08 1.52 6.71 -2.39 -0.02 1.51 16 28 H 0.06 1.62 6.34 -2.39 -0.02 1.61 16 29 H 0.33 12.90 5.83 -89.70 -0.52 12.38 16 30 H 0.01 0.64 6.95 -2.38 -0.02 0.62 16 31 H 0.06 2.63 7.35 -2.38 -0.02 2.61 16 32 H 0.35 17.19 9.04 -74.06 -0.67 16.52 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.07 1.09 7.76 -2.39 -0.02 1.07 16 35 H 0.08 1.21 6.47 -2.39 -0.02 1.20 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.04 1.22 7.11 -2.39 -0.02 1.21 16 38 H 0.07 1.49 6.48 -2.38 -0.02 1.47 16 39 H 0.07 1.29 7.08 -2.39 -0.02 1.27 16 40 H 0.14 2.38 7.11 -2.91 -0.02 2.35 16 41 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 44 H 0.11 3.54 4.01 -2.91 -0.01 3.52 16 Total: -1.00 -66.11 338.61 1.71 -64.40 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -0.19 Total: 41.56 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 3.92 Total: -37.65 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.17 Total: -81.66 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.88 Total: -32.75 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.11 1.71 -64.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809578045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.434 kcal (2) G-P(sol) polarization free energy of solvation -66.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds