Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47249 * 2 1 4 4 H 1.08999 * 109.46969 * 55.96101 * 3 2 1 5 5 C 1.52998 * 109.47073 * 175.95798 * 3 2 1 6 6 N 1.46899 * 109.47027 * 295.95531 * 3 2 1 7 7 C 1.46901 * 111.00014 * 166.40137 * 6 3 2 8 8 C 1.52992 * 109.47539 * 288.93064 * 7 6 3 9 9 C 1.46893 * 111.00297 * 290.36346 * 6 3 2 10 10 C 1.50704 * 109.47342 * 169.99945 * 9 6 3 11 11 C 1.38295 * 119.93118 * 89.99722 * 10 9 6 12 12 C 1.38100 * 120.07208 * 180.02562 * 11 10 9 13 13 C 1.38877 * 119.92685 * 359.97438 * 12 11 10 14 14 O 1.35753 * 120.07094 * 179.97438 * 13 12 11 15 15 C 1.34833 * 116.99769 * 5.18731 * 14 13 12 16 16 H 1.08008 * 119.99767 * 355.02007 * 15 14 13 17 17 C 1.38652 * 120.00234 * 175.01491 * 15 14 13 18 18 N 1.31557 * 119.99880 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00308 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46906 * 90.00308 * 19 17 15 21 21 H 1.48498 * 109.47750 * 210.00343 * 19 17 15 22 22 H 1.48502 * 109.47239 * 330.00812 * 19 17 15 23 23 C 1.38879 * 119.86476 * 0.27655 * 13 12 11 24 24 C 1.38099 * 119.92859 * 359.49052 * 23 13 12 25 25 H 1.09000 * 109.46744 * 185.06922 * 1 2 3 26 26 H 1.08996 * 109.46600 * 305.07045 * 1 2 3 27 27 H 1.08998 * 109.46635 * 65.06507 * 1 2 3 28 28 H 1.09000 * 109.46970 * 239.99797 * 2 1 3 29 29 H 1.09002 * 109.46743 * 120.00149 * 2 1 3 30 30 H 1.09001 * 109.47240 * 300.00534 * 5 3 2 31 31 H 1.09009 * 109.47050 * 60.00169 * 5 3 2 32 32 H 1.08999 * 109.47424 * 179.97438 * 5 3 2 33 33 H 1.09003 * 109.46573 * 48.93147 * 7 6 3 34 34 H 1.08994 * 109.47106 * 168.92460 * 7 6 3 35 35 H 1.09001 * 109.47311 * 185.82233 * 8 7 6 36 36 H 1.09008 * 109.47055 * 305.81581 * 8 7 6 37 37 H 1.08997 * 109.47748 * 65.81819 * 8 7 6 38 38 H 1.09002 * 109.47575 * 49.99972 * 9 6 3 39 39 H 1.09005 * 109.47332 * 289.99563 * 9 6 3 40 40 H 1.08002 * 119.97038 * 359.97438 * 11 10 9 41 41 H 1.08000 * 120.03860 * 179.97438 * 12 11 10 42 42 H 0.97000 * 120.00350 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03858 * 179.72521 * 23 13 12 44 44 H 1.08003 * 119.97028 * 180.23416 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6188 1.9768 0.8516 5 6 3.5667 1.4436 0.1017 6 7 1.6318 2.1062 -1.2453 7 6 1.8144 3.5608 -1.1510 8 6 0.7704 4.1451 -0.1975 9 6 2.3597 1.5578 -2.3973 10 6 1.7486 2.0793 -3.6723 11 6 2.2153 3.2554 -4.2306 12 6 1.6571 3.7362 -5.3986 13 6 0.6263 3.0371 -6.0129 14 8 0.0751 3.5074 -7.1609 15 6 0.6441 4.5992 -7.7107 16 1 1.4474 5.1062 -7.1968 17 6 0.1980 5.0710 -8.9358 18 7 -0.7808 4.4537 -9.5616 19 14 0.9858 6.5839 -9.6971 20 1 2.1273 6.1703 -10.5522 21 1 -0.0175 7.3016 -10.5239 22 1 1.4741 7.4827 -8.6205 23 6 0.1563 1.8591 -5.4471 24 6 0.7219 1.3810 -4.2815 25 1 -0.3633 -1.0237 0.0908 26 1 -0.3632 0.5905 0.8411 27 1 -0.3632 0.4333 -0.9319 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8697 0.9511 1.0256 31 1 3.9880 0.9093 -0.7500 32 1 3.9301 2.4713 0.1012 33 1 2.8135 3.7776 -0.7729 34 1 1.6949 4.0067 -2.1383 35 1 0.8384 5.2330 -0.2067 36 1 -0.2258 3.8408 -0.5188 37 1 0.9545 3.7781 0.8122 38 1 2.2964 0.4697 -2.3827 39 1 3.4052 1.8617 -2.3447 40 1 3.0167 3.7989 -3.7522 41 1 2.0217 4.6549 -5.8339 42 1 -1.0932 4.7839 -10.4184 43 1 -0.6482 1.3156 -5.9201 44 1 0.3595 0.4630 -3.8430 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852292113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -9.893830 kcal Electronic energy + Delta-G solvation = -21822.716890 eV Core-core repulsion = 18740.502615 eV Total energy + Delta-G solvation = -3082.214276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.49523 -38.50384 -36.35953 -33.53530 -32.32129 -31.10118 -30.16684 -30.00534 -28.06171 -25.59413 -24.41452 -23.95353 -22.25884 -21.64691 -20.69087 -19.02391 -17.94598 -16.95024 -16.18948 -15.53477 -14.95787 -14.55918 -14.40967 -14.04379 -13.89831 -13.69394 -13.53393 -13.20225 -13.13161 -13.00364 -12.65541 -12.40561 -12.07655 -11.90963 -11.67972 -11.55234 -11.40460 -11.22572 -11.15853 -10.92651 -10.80331 -10.70872 -10.57901 -10.42825 -10.33542 -10.29711 -9.30180 -8.80733 -8.14253 -8.06092 -7.12345 -6.42880 -4.01649 2.25949 2.33564 3.13547 3.14438 3.19100 3.98253 4.04590 4.63690 4.74991 4.96886 5.08864 5.12173 5.21558 5.28951 5.33099 5.36004 5.38722 5.49237 5.55397 5.60122 5.64921 5.68331 5.77515 5.81566 5.93848 5.94366 5.99156 6.02514 6.07510 6.20603 6.24436 6.26609 6.34515 6.44139 6.48304 6.75444 6.94581 7.06934 7.25243 7.26374 7.35727 7.45503 7.48926 7.87585 8.02341 9.02919 9.74059 10.75327 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.003716 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.055036 B = 7533.959126 C = 7902.199384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.080 0.920 5 C -0.187 4.187 6 N -0.521 5.521 7 C 0.042 3.958 8 C -0.144 4.144 9 C 0.109 3.891 10 C -0.175 4.175 11 C -0.068 4.068 12 C -0.234 4.234 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.194 4.194 24 C -0.053 4.053 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.269 0.731 43 H 0.115 0.885 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 -4.729 17.661 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.033 4.033 4 H 0.098 0.902 5 C -0.246 4.246 6 N -0.245 5.245 7 C -0.086 4.086 8 C -0.202 4.202 9 C -0.017 4.017 10 C -0.176 4.176 11 C -0.086 4.086 12 C -0.253 4.253 13 C 0.101 3.899 14 O -0.083 6.083 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.213 4.213 24 C -0.072 4.072 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.120 0.880 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.133 0.867 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.384 -4.859 17.232 18.696 hybrid contribution 1.354 1.027 -0.252 1.718 sum 6.739 -3.832 16.980 18.666 Atomic orbital electron populations 1.21636 0.95168 1.00346 1.02808 1.21562 0.96906 0.95312 1.01340 1.21800 0.92663 0.95532 0.93270 0.90215 1.22484 0.98161 1.01829 1.02130 1.62279 1.56728 1.03626 1.01849 1.22192 0.96794 0.88298 1.01315 1.21753 1.00242 0.99686 0.98489 1.20843 0.94140 0.98897 0.87857 1.19103 1.02090 0.98432 0.98009 1.20575 0.98208 0.94955 0.94891 1.21109 1.02034 1.03303 0.98892 1.19393 0.91003 0.91974 0.87510 1.83982 1.50124 1.42333 1.31825 1.21314 1.18742 1.03446 1.03267 0.89151 1.25273 0.96503 0.99257 0.95474 1.70039 1.25183 1.39307 1.15323 0.85729 0.78623 0.79945 0.79230 1.19912 1.20265 1.19235 1.20212 1.04927 0.97150 0.99015 1.20435 0.94644 0.98317 0.93797 0.93803 0.93431 0.91208 0.91896 0.92402 0.92490 0.92132 0.92729 0.95379 0.89536 0.92755 0.91733 0.93490 0.90766 0.94936 0.88040 0.85749 0.92062 0.86669 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.73 37.16 0.36 -1.09 16 2 C -0.11 -1.10 5.38 -26.73 -0.14 -1.24 16 3 C 0.08 0.78 2.20 -67.71 -0.15 0.64 16 4 H 0.08 0.82 6.38 -51.93 -0.33 0.49 16 5 C -0.19 -1.77 8.40 37.16 0.31 -1.46 16 6 N -0.52 -6.52 3.89 -228.09 -0.89 -7.40 16 7 C 0.04 0.52 5.43 -3.83 -0.02 0.50 16 8 C -0.14 -1.63 9.85 37.15 0.37 -1.27 16 9 C 0.11 1.48 3.94 -4.98 -0.02 1.46 16 10 C -0.18 -2.96 4.94 -104.57 -0.52 -3.48 16 11 C -0.07 -1.23 7.84 -39.61 -0.31 -1.54 16 12 C -0.23 -5.09 9.17 -39.40 -0.36 -5.46 16 13 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 14 O -0.18 -5.16 9.76 0.03 0.00 -5.16 16 15 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 16 H 0.09 2.36 5.20 -52.48 -0.27 2.08 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.49 13.67 55.48 0.76 -24.74 16 19 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.19 -4.14 9.99 -39.40 -0.39 -4.53 16 24 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.84 7.87 -51.93 -0.41 0.44 16 28 H 0.06 0.64 6.36 -51.93 -0.33 0.31 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.60 6.54 -51.92 -0.34 0.26 16 32 H 0.05 0.53 6.67 -51.93 -0.35 0.19 16 33 H 0.03 0.33 6.48 -51.93 -0.34 0.00 16 34 H 0.09 1.27 5.17 -51.93 -0.27 1.00 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 37 H 0.05 0.47 6.74 -51.93 -0.35 0.12 16 38 H 0.07 0.95 6.15 -51.93 -0.32 0.63 16 39 H 0.03 0.43 6.78 -51.93 -0.35 0.08 16 40 H 0.10 1.61 7.75 -52.49 -0.41 1.20 16 41 H 0.12 2.73 5.64 -52.49 -0.30 2.43 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 44 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -29.54 343.36 -8.17 -37.71 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.87 Total: 3.84 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -1.32 Total: -25.04 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: -0.13 Total: -32.14 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.54 -8.17 -37.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852292113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.820 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds