Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47249 * 2 1 4 4 H 1.08999 * 109.46969 * 55.96101 * 3 2 1 5 5 C 1.52998 * 109.47073 * 175.95798 * 3 2 1 6 6 N 1.46899 * 109.47027 * 295.95531 * 3 2 1 7 7 C 1.46901 * 111.00014 * 166.40137 * 6 3 2 8 8 C 1.52992 * 109.47539 * 288.93064 * 7 6 3 9 9 C 1.46893 * 111.00297 * 290.36346 * 6 3 2 10 10 C 1.50704 * 109.47342 * 169.99945 * 9 6 3 11 11 C 1.38295 * 119.93118 * 89.99722 * 10 9 6 12 12 C 1.38100 * 120.07208 * 180.02562 * 11 10 9 13 13 C 1.38877 * 119.92685 * 359.97438 * 12 11 10 14 14 O 1.35753 * 120.07094 * 179.97438 * 13 12 11 15 15 C 1.34833 * 116.99769 * 5.18731 * 14 13 12 16 16 H 1.08008 * 119.99767 * 355.02007 * 15 14 13 17 17 C 1.38652 * 120.00234 * 175.01491 * 15 14 13 18 18 N 1.31557 * 119.99880 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00308 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46906 * 90.00308 * 19 17 15 21 21 H 1.48498 * 109.47750 * 210.00343 * 19 17 15 22 22 H 1.48502 * 109.47239 * 330.00812 * 19 17 15 23 23 C 1.38879 * 119.86476 * 0.27655 * 13 12 11 24 24 C 1.38099 * 119.92859 * 359.49052 * 23 13 12 25 25 H 1.09000 * 109.46744 * 185.06922 * 1 2 3 26 26 H 1.08996 * 109.46600 * 305.07045 * 1 2 3 27 27 H 1.08998 * 109.46635 * 65.06507 * 1 2 3 28 28 H 1.09000 * 109.46970 * 239.99797 * 2 1 3 29 29 H 1.09002 * 109.46743 * 120.00149 * 2 1 3 30 30 H 1.09001 * 109.47240 * 300.00534 * 5 3 2 31 31 H 1.09009 * 109.47050 * 60.00169 * 5 3 2 32 32 H 1.08999 * 109.47424 * 179.97438 * 5 3 2 33 33 H 1.09003 * 109.46573 * 48.93147 * 7 6 3 34 34 H 1.08994 * 109.47106 * 168.92460 * 7 6 3 35 35 H 1.09001 * 109.47311 * 185.82233 * 8 7 6 36 36 H 1.09008 * 109.47055 * 305.81581 * 8 7 6 37 37 H 1.08997 * 109.47748 * 65.81819 * 8 7 6 38 38 H 1.09002 * 109.47575 * 49.99972 * 9 6 3 39 39 H 1.09005 * 109.47332 * 289.99563 * 9 6 3 40 40 H 1.08002 * 119.97038 * 359.97438 * 11 10 9 41 41 H 1.08000 * 120.03860 * 179.97438 * 12 11 10 42 42 H 0.97000 * 120.00350 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03858 * 179.72521 * 23 13 12 44 44 H 1.08003 * 119.97028 * 180.23416 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6188 1.9768 0.8516 5 6 3.5667 1.4436 0.1017 6 7 1.6318 2.1062 -1.2453 7 6 1.8144 3.5608 -1.1510 8 6 0.7704 4.1451 -0.1975 9 6 2.3597 1.5578 -2.3973 10 6 1.7486 2.0793 -3.6723 11 6 2.2153 3.2554 -4.2306 12 6 1.6571 3.7362 -5.3986 13 6 0.6263 3.0371 -6.0129 14 8 0.0751 3.5074 -7.1609 15 6 0.6441 4.5992 -7.7107 16 1 1.4474 5.1062 -7.1968 17 6 0.1980 5.0710 -8.9358 18 7 -0.7808 4.4537 -9.5616 19 14 0.9858 6.5839 -9.6971 20 1 2.1273 6.1703 -10.5522 21 1 -0.0175 7.3016 -10.5239 22 1 1.4741 7.4827 -8.6205 23 6 0.1563 1.8591 -5.4471 24 6 0.7219 1.3810 -4.2815 25 1 -0.3633 -1.0237 0.0908 26 1 -0.3632 0.5905 0.8411 27 1 -0.3632 0.4333 -0.9319 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8697 0.9511 1.0256 31 1 3.9880 0.9093 -0.7500 32 1 3.9301 2.4713 0.1012 33 1 2.8135 3.7776 -0.7729 34 1 1.6949 4.0067 -2.1383 35 1 0.8384 5.2330 -0.2067 36 1 -0.2258 3.8408 -0.5188 37 1 0.9545 3.7781 0.8122 38 1 2.2964 0.4697 -2.3827 39 1 3.4052 1.8617 -2.3447 40 1 3.0167 3.7989 -3.7522 41 1 2.0217 4.6549 -5.8339 42 1 -1.0932 4.7839 -10.4184 43 1 -0.6482 1.3156 -5.9201 44 1 0.3595 0.4630 -3.8430 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852292113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = -26.613969 kcal Electronic energy + Delta-G solvation = -21823.441930 eV Core-core repulsion = 18740.502615 eV Total energy + Delta-G solvation = -3082.939315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94377 -39.86501 -37.99199 -34.54878 -34.19613 -32.38364 -31.77357 -30.94255 -29.25332 -27.46937 -25.75221 -24.81898 -23.65133 -22.80164 -22.21785 -20.05486 -19.78539 -18.76743 -17.30017 -16.51124 -16.43217 -16.32540 -15.71969 -15.51656 -15.36265 -15.04991 -14.67520 -14.41135 -14.23589 -14.15909 -13.99016 -13.76350 -13.51589 -13.14025 -12.92809 -12.71710 -12.53115 -12.43158 -12.32265 -12.21488 -12.12785 -12.02537 -11.94968 -11.68965 -11.35571 -11.23528 -11.13866 -10.77318 -9.73084 -9.09578 -8.82634 -8.46381 -6.14443 0.62344 0.71277 1.34641 1.44095 1.52166 2.18110 2.77061 3.06584 3.34292 3.54779 3.92628 4.00102 4.05500 4.20409 4.25552 4.28321 4.35618 4.44746 4.54567 4.61522 4.63912 4.68058 4.73345 4.80318 4.82771 4.88891 4.90378 5.09269 5.12297 5.15831 5.17181 5.21836 5.26683 5.30521 5.33116 5.42723 5.48880 5.61140 5.63100 5.73256 5.84753 6.04107 6.22591 6.29835 6.39990 6.98415 7.80337 8.77113 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.003716 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.055036 B = 7533.959126 C = 7902.199384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.077 3.923 4 H 0.084 0.916 5 C -0.183 4.183 6 N -0.530 5.530 7 C 0.041 3.959 8 C -0.139 4.139 9 C 0.113 3.887 10 C -0.148 4.148 11 C -0.062 4.062 12 C -0.242 4.242 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.414 4.414 16 H 0.100 0.900 17 C -0.023 4.023 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.205 4.205 24 C -0.048 4.048 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.132 0.868 41 H 0.116 0.884 42 H 0.272 0.728 43 H 0.110 0.890 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.400 -5.049 20.681 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.031 4.031 4 H 0.102 0.898 5 C -0.242 4.242 6 N -0.254 5.254 7 C -0.087 4.087 8 C -0.197 4.197 9 C -0.013 4.013 10 C -0.149 4.149 11 C -0.081 4.081 12 C -0.261 4.261 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.220 4.220 18 N -0.560 5.560 19 Si 0.837 3.163 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.177 1.177 23 C -0.224 4.224 24 C -0.066 4.066 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.588 -5.205 20.316 22.303 hybrid contribution 0.740 0.929 -0.835 1.452 sum 8.328 -4.276 19.481 21.613 Atomic orbital electron populations 1.21600 0.95750 1.00712 1.01684 1.21568 0.96297 0.94939 1.02102 1.21856 0.93529 0.95684 0.91991 0.89770 1.22438 0.97040 1.01838 1.02880 1.62217 1.56956 1.03717 1.02525 1.22176 0.97900 0.88295 1.00333 1.21706 0.98906 1.00128 0.98970 1.20828 0.94451 0.99697 0.86373 1.19612 1.00000 0.96809 0.98522 1.20880 0.98396 0.95374 0.93422 1.21194 1.01770 1.03056 1.00092 1.19922 0.92794 0.93664 0.87349 1.83944 1.52370 1.43597 1.34181 1.21813 1.19258 1.03885 1.04011 0.88223 1.26580 0.96988 1.02828 0.95641 1.70187 1.27644 1.41957 1.16210 0.84597 0.77766 0.75479 0.78430 1.18795 1.19550 1.17674 1.20447 1.05216 0.96567 1.00206 1.20794 0.94243 0.99242 0.92325 0.93003 0.93219 0.93384 0.92150 0.90604 0.90955 0.92367 0.92990 0.94049 0.91906 0.92118 0.93356 0.91933 0.89261 0.93658 0.85011 0.86610 0.91866 0.87183 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.73 71.98 0.70 -1.76 16 2 C -0.11 -1.73 5.38 30.60 0.16 -1.57 16 3 C 0.08 1.30 2.20 44.92 0.10 1.40 16 4 H 0.08 1.39 6.38 -2.39 -0.02 1.37 16 5 C -0.18 -2.68 8.40 71.98 0.60 -2.08 16 6 N -0.53 -11.52 3.89 -875.54 -3.40 -14.92 16 7 C 0.04 0.91 5.43 86.30 0.47 1.38 16 8 C -0.14 -2.84 9.85 71.98 0.71 -2.13 16 9 C 0.11 2.64 3.94 85.56 0.34 2.98 16 10 C -0.15 -4.66 4.94 -19.83 -0.10 -4.76 16 11 C -0.06 -2.17 7.84 22.25 0.17 -1.99 16 12 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 13 C 0.11 5.75 6.65 22.58 0.15 5.91 16 14 O -0.23 -14.41 9.76 -22.80 -0.22 -14.63 16 15 C -0.41 -24.52 9.49 67.92 0.64 -23.88 16 16 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 17 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 18 N -0.92 -57.38 13.67 21.61 0.30 -57.09 16 19 Si 1.02 43.39 29.55 68.60 2.03 45.42 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 23 C -0.21 -8.99 9.99 22.39 0.22 -8.76 16 24 C -0.05 -1.65 9.69 22.25 0.22 -1.43 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 1.05 7.87 -2.39 -0.02 1.03 16 28 H 0.06 0.99 6.36 -2.39 -0.02 0.97 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.89 6.54 -2.38 -0.02 0.87 16 32 H 0.05 0.80 6.67 -2.39 -0.02 0.78 16 33 H 0.04 0.83 6.48 -2.39 -0.02 0.81 16 34 H 0.06 1.70 5.17 -2.39 -0.01 1.69 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.06 1.07 6.74 -2.39 -0.02 1.05 16 38 H 0.09 1.89 6.15 -2.39 -0.01 1.88 16 39 H 0.05 0.99 6.78 -2.38 -0.02 0.97 16 40 H 0.13 3.80 7.75 -2.91 -0.02 3.77 16 41 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 44 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -68.68 343.36 4.74 -63.94 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.98 Total: 25.36 kcal Atomic # 6 Polarization: -53.14 SS G_CDS: 5.07 Total: -48.07 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -3.11 Total: -72.01 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.22 Total: -14.63 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.68 4.74 -63.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852292113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.326 kcal (2) G-P(sol) polarization free energy of solvation -68.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds