Wall clock time and date at job start Mon Mar 30 2020 02:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.35896 * 117.00039 * 179.97438 * 4 3 2 6 6 C 1.38757 * 120.05265 * 359.97438 * 5 4 3 7 7 C 1.38130 * 119.94053 * 180.02562 * 6 5 4 8 8 C 1.38281 * 120.05819 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.94547 * 180.02562 * 8 7 6 10 10 N 1.46903 * 109.46980 * 90.00288 * 9 8 7 11 11 C 1.46898 * 110.99670 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46932 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47121 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99834 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00002 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00064 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00077 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46932 * 89.99879 * 17 15 13 19 19 H 1.48496 * 109.47151 * 210.00424 * 17 15 13 20 20 H 1.48505 * 109.46904 * 330.00113 * 17 15 13 21 21 C 1.38249 * 120.10948 * 0.04714 * 8 7 6 22 22 C 1.38166 * 120.05826 * 359.67723 * 21 8 7 23 23 C 1.50701 * 120.02867 * 180.29901 * 22 21 8 24 24 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 25 25 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 26 26 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 28 28 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 29 29 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 30 30 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 31 31 H 1.07997 * 120.03063 * 0.02562 * 6 5 4 32 32 H 1.07996 * 119.96795 * 179.97438 * 7 6 5 33 33 H 1.08995 * 109.47189 * 209.99792 * 9 8 7 34 34 H 1.08996 * 109.46612 * 330.00034 * 9 8 7 35 35 H 1.00899 * 110.99874 * 56.04538 * 10 9 8 36 36 H 1.09000 * 109.47086 * 299.99610 * 11 10 9 37 37 H 1.08998 * 109.47198 * 60.00001 * 11 10 9 38 38 H 1.08999 * 109.47283 * 300.00558 * 12 11 10 39 39 H 1.09005 * 109.46404 * 60.00017 * 12 11 10 40 40 H 0.96996 * 119.99911 * 179.97438 * 16 15 13 41 41 H 1.07999 * 119.96881 * 179.97438 * 21 8 7 42 42 H 1.08999 * 109.46852 * 270.27195 * 23 22 21 43 43 H 1.08994 * 109.46996 * 30.28079 * 23 22 21 44 44 H 1.08996 * 109.46797 * 150.27971 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0861 2.6532 -0.0012 6 6 3.3315 3.8177 -0.0018 7 6 3.9611 5.0472 -0.0030 8 6 5.3421 5.1182 -0.0030 9 6 6.0263 6.4609 -0.0037 10 7 6.2487 6.8979 1.3811 11 6 6.9149 8.2065 1.4196 12 6 7.1284 8.6275 2.8750 13 6 7.8124 9.9697 2.9145 14 1 8.0688 10.4725 1.9937 15 6 8.1109 10.5559 4.1262 16 7 8.7074 11.7275 4.1607 17 14 7.6682 9.6860 5.7189 18 1 8.7986 8.8203 6.1408 19 1 7.3960 10.6943 6.7745 20 1 6.4579 8.8518 5.5074 21 6 6.0961 3.9594 -0.0029 22 6 5.4712 2.7272 0.0040 23 6 6.2938 1.4645 0.0109 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 2.2529 3.7628 -0.0013 32 1 3.3742 5.9538 -0.0038 33 1 6.9842 6.3803 -0.5175 34 1 5.3982 7.1884 -0.5179 35 1 6.7744 6.2087 1.8976 36 1 7.8789 8.1384 0.9155 37 1 6.2926 8.9459 0.9154 38 1 6.1642 8.6955 3.3788 39 1 7.7505 7.8880 3.3794 40 1 8.9171 12.1401 5.0131 41 1 7.1745 4.0175 -0.0034 42 1 6.4961 1.1570 -1.0150 43 1 7.2357 1.6473 0.5280 44 1 5.7444 0.6758 0.5249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873104296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:53 Heat of formation + Delta-G solvation = -39.528174 kcal Electronic energy + Delta-G solvation = -20464.257803 eV Core-core repulsion = 17380.758485 eV Total energy + Delta-G solvation = -3083.499317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41588 -38.15177 -35.92682 -34.30425 -33.12899 -32.61502 -31.09597 -29.14455 -27.24841 -26.82210 -25.12742 -23.15595 -22.79130 -21.22388 -20.74217 -20.16269 -18.16051 -16.75005 -16.58553 -16.43194 -15.57591 -14.88835 -14.63470 -14.41701 -14.30774 -14.27222 -13.76744 -13.39411 -13.20516 -13.12496 -12.86505 -12.54883 -12.50005 -12.25300 -12.19159 -12.10632 -11.53536 -11.49668 -11.31778 -11.18804 -10.96609 -10.86677 -10.78388 -10.05558 -9.85482 -9.74115 -9.21507 -8.85896 -8.51944 -8.12270 -7.86673 -6.02805 -4.01091 1.29541 1.37555 2.96223 3.33899 3.41244 3.47939 3.65911 4.45783 4.46759 4.48175 4.69452 4.70896 4.79517 4.81702 4.96859 5.00948 5.03341 5.18308 5.25999 5.29891 5.31828 5.46419 5.51167 5.53785 5.57524 5.63013 5.64764 5.75840 5.81384 5.89602 6.12678 6.20154 6.27476 6.30147 6.36237 6.67948 6.74014 6.78962 7.14498 7.29452 7.39792 7.62600 7.77081 7.92455 8.54780 9.01228 9.59696 11.10465 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025893 B = 0.002698 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.122034 B =10374.845287 C =10676.567262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.315 6.315 5 C 0.122 3.878 6 C -0.206 4.206 7 C -0.064 4.064 8 C -0.106 4.106 9 C 0.100 3.900 10 N -0.690 5.690 11 C 0.073 3.927 12 C -0.010 4.010 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.263 1.263 21 C -0.078 4.078 22 C -0.119 4.119 23 C -0.102 4.102 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.336 0.664 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.009 0.991 40 H 0.263 0.737 41 H 0.126 0.874 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 -24.409 -10.765 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.230 6.230 5 C 0.077 3.923 6 C -0.224 4.224 7 C -0.082 4.082 8 C -0.107 4.107 9 C -0.029 4.029 10 N -0.321 5.321 11 C -0.055 4.055 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.187 1.187 21 C -0.097 4.097 22 C -0.120 4.120 23 C -0.159 4.159 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.153 0.847 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.144 0.856 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.998 -24.181 -10.580 29.876 hybrid contribution 0.521 -0.280 0.661 0.887 sum -13.477 -24.460 -9.919 29.637 Atomic orbital electron populations 1.21695 0.94284 1.02496 1.02287 1.21477 0.96013 0.94934 1.03628 1.22850 0.78793 0.98628 1.01439 1.86009 1.20933 1.27141 1.88870 1.18748 0.91688 0.83979 0.97888 1.21190 0.99734 0.92356 1.09169 1.20827 0.94037 0.96919 0.96434 1.19803 0.93721 0.94874 1.02256 1.20821 0.98175 0.92476 0.91460 1.60652 1.54498 1.05627 1.11281 1.21982 0.95198 0.88285 1.00055 1.19550 0.96968 0.96534 0.91718 1.21072 1.38206 1.02250 0.94396 0.91106 1.25013 0.94538 0.94734 0.99206 1.69916 1.42101 1.16252 1.26040 0.86746 0.79627 0.79566 0.83200 1.20394 1.21442 1.18738 1.20807 0.99664 0.90663 0.98541 1.19181 0.90543 0.96015 1.06237 1.20576 0.98781 0.94562 1.02000 0.92302 0.92361 0.91756 0.90911 0.90858 0.92055 0.92154 0.85755 0.85607 0.94837 0.90503 0.84684 0.95965 0.91671 0.95654 0.97305 0.92745 0.85613 0.91677 0.91717 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.78 6.30 -26.73 -0.17 -0.94 16 3 C 0.06 0.47 4.74 37.16 0.18 0.64 16 4 O -0.32 -3.49 9.18 -19.41 -0.18 -3.66 16 5 C 0.12 1.49 6.66 -39.22 -0.26 1.22 16 6 C -0.21 -2.40 9.04 -39.43 -0.36 -2.76 16 7 C -0.06 -0.80 9.69 -39.61 -0.38 -1.19 16 8 C -0.11 -1.41 5.39 -104.60 -0.56 -1.97 16 9 C 0.10 1.43 5.81 -4.97 -0.03 1.40 16 10 N -0.69 -11.95 6.49 -115.06 -0.75 -12.69 16 11 C 0.07 1.49 5.62 -3.82 -0.02 1.47 16 12 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 13 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 17 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 21 C -0.08 -0.97 9.35 -39.60 -0.37 -1.34 16 22 C -0.12 -1.44 5.89 -104.47 -0.62 -2.06 16 23 C -0.10 -1.01 9.79 36.01 0.35 -0.66 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 30 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.34 5.62 8.72 -39.29 -0.34 5.28 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 39 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 44 H 0.07 0.68 7.53 -51.93 -0.39 0.28 16 LS Contribution 359.95 15.07 5.42 5.42 Total: -1.00 -31.80 359.95 -9.52 -41.32 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.70 Total: 0.01 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -2.42 Total: -20.46 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.03 Total: -40.14 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.18 Total: -3.66 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.80 -9.52 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873104296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.790 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds