Wall clock time and date at job start Mon Mar 30 2020 02:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47055 * 2 1 4 4 O 1.42897 * 109.47158 * 179.97438 * 3 2 1 5 5 C 1.35903 * 116.99710 * 179.97438 * 4 3 2 6 6 C 1.38750 * 120.05951 * 0.02562 * 5 4 3 7 7 C 1.38121 * 119.94771 * 180.02562 * 6 5 4 8 8 C 1.38287 * 120.05211 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.93878 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.47052 * 90.00293 * 9 8 7 11 11 C 1.36943 * 119.99719 * 89.99478 * 10 9 8 12 12 H 1.07997 * 119.99697 * 213.98978 * 11 10 9 13 13 C 1.38806 * 120.00035 * 33.99781 * 11 10 9 14 14 N 1.31620 * 120.00461 * 22.94252 * 13 11 10 15 15 Si 1.86805 * 119.99923 * 202.94732 * 13 11 10 16 16 H 1.48499 * 109.47011 * 59.99326 * 15 13 11 17 17 H 1.48494 * 109.47080 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46865 * 299.99918 * 15 13 11 19 19 C 1.46491 * 119.99829 * 269.99840 * 10 9 8 20 20 C 1.53003 * 109.47485 * 95.65683 * 19 10 9 21 21 C 1.38240 * 120.11146 * 0.04505 * 8 7 6 22 22 C 1.38161 * 120.05822 * 359.67695 * 21 8 7 23 23 C 1.50697 * 120.03038 * 180.29434 * 22 21 8 24 24 H 1.08992 * 109.47237 * 299.99980 * 1 2 3 25 25 H 1.09005 * 109.47070 * 60.00375 * 1 2 3 26 26 H 1.09007 * 109.46737 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47603 * 239.99901 * 2 1 3 28 28 H 1.09005 * 109.47070 * 119.99624 * 2 1 3 29 29 H 1.08999 * 109.46995 * 59.99529 * 3 2 1 30 30 H 1.09005 * 109.46875 * 299.99744 * 3 2 1 31 31 H 1.08009 * 120.02264 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.97088 * 179.97438 * 7 6 5 33 33 H 1.09010 * 109.47282 * 209.99930 * 9 8 7 34 34 H 1.08996 * 109.47718 * 329.99887 * 9 8 7 35 35 H 0.97003 * 120.00299 * 180.02562 * 14 13 11 36 36 H 1.09007 * 109.46862 * 215.65840 * 19 10 9 37 37 H 1.08996 * 109.47579 * 335.65079 * 19 10 9 38 38 H 1.09001 * 109.46875 * 59.99804 * 20 19 10 39 39 H 1.08994 * 109.47266 * 179.97438 * 20 19 10 40 40 H 1.09000 * 109.46650 * 300.00292 * 20 19 10 41 41 H 1.08004 * 119.96617 * 179.97438 * 21 8 7 42 42 H 1.08999 * 109.47627 * 270.28322 * 23 22 21 43 43 H 1.09006 * 109.47135 * 30.28021 * 23 22 21 44 44 H 1.09004 * 109.47478 * 150.27430 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0859 2.6535 0.0001 6 6 3.3313 3.8179 -0.0003 7 6 3.9607 5.0474 -0.0013 8 6 5.3418 5.1184 -0.0013 9 6 6.0258 6.4612 -0.0018 10 7 6.2475 6.8968 1.3793 11 6 7.4078 6.5620 2.0249 12 1 7.3977 6.3665 3.0870 13 6 8.5969 6.4740 1.3143 14 7 8.7325 7.1200 0.1755 15 14 10.0049 5.4386 1.9740 16 1 9.5614 4.0277 2.1077 17 1 11.1538 5.5103 1.0361 18 1 10.4187 5.9554 3.3034 19 6 5.2279 7.6905 2.0695 20 6 4.3405 6.7655 2.9049 21 6 6.0958 3.9598 -0.0013 22 6 5.4710 2.7275 0.0055 23 6 6.2936 1.4649 0.0123 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 2.2526 3.7628 0.0001 32 1 3.3737 5.9539 -0.0021 33 1 6.9838 6.3808 -0.5157 34 1 5.3978 7.1888 -0.5160 35 1 9.5634 7.0582 -0.3212 36 1 5.7128 8.4161 2.7226 37 1 4.6165 8.2146 1.3350 38 1 4.9519 6.2414 3.6395 39 1 3.5821 7.3561 3.4188 40 1 3.8556 6.0399 2.2517 41 1 7.1743 4.0180 -0.0017 42 1 6.4961 1.1576 -1.0137 43 1 7.2357 1.6477 0.5294 44 1 5.7443 0.6760 0.5263 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876632539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:55 Heat of formation + Delta-G solvation = -13.366365 kcal Electronic energy + Delta-G solvation = -22058.867955 eV Core-core repulsion = 18976.503098 eV Total energy + Delta-G solvation = -3082.364856 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.82489 -37.58743 -35.63672 -33.94280 -32.30203 -31.80547 -30.46395 -28.41701 -26.85272 -26.43669 -25.02728 -23.33886 -22.42604 -20.85862 -20.54046 -19.72278 -17.62235 -16.62017 -16.21760 -15.81287 -14.95086 -14.41549 -14.23965 -13.92957 -13.75916 -13.70591 -13.50092 -13.00366 -12.66879 -12.47309 -12.33475 -12.28744 -12.15113 -11.81852 -11.68848 -11.41876 -11.19418 -11.13592 -11.07679 -10.76849 -10.62658 -10.50252 -10.36807 -10.24824 -9.97305 -9.83684 -9.67476 -8.47772 -8.15821 -7.37267 -6.60205 -5.78419 -3.31269 1.96428 2.10689 3.37461 3.42675 3.43868 3.47149 4.35335 4.52438 4.73122 4.76371 5.06533 5.22460 5.26579 5.30710 5.32014 5.36043 5.49536 5.65577 5.70249 5.71427 5.85782 5.87698 5.97672 6.05249 6.07229 6.08334 6.17005 6.23493 6.41517 6.43137 6.48233 6.58291 6.66247 6.82464 6.92559 6.93942 7.11025 7.21185 7.43498 7.47374 7.74893 7.83153 7.90278 8.51370 9.19047 9.83053 10.39492 11.21343 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.004951 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.542257 B = 5654.079637 C = 6457.720941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.061 3.939 4 O -0.319 6.319 5 C 0.102 3.898 6 C -0.210 4.210 7 C -0.089 4.089 8 C -0.096 4.096 9 C 0.172 3.828 10 N -0.576 5.576 11 C -0.250 4.250 12 H 0.060 0.940 13 C 0.010 3.990 14 N -0.886 5.886 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.281 1.281 19 C 0.143 3.857 20 C -0.170 4.170 21 C -0.063 4.063 22 C -0.122 4.122 23 C -0.100 4.100 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.031 0.969 35 H 0.256 0.744 36 H 0.043 0.957 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.033 0.967 40 H 0.049 0.951 41 H 0.125 0.875 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 -10.043 -1.914 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.015 4.015 4 O -0.234 6.234 5 C 0.057 3.943 6 C -0.228 4.228 7 C -0.108 4.108 8 C -0.099 4.099 9 C 0.046 3.954 10 N -0.296 5.296 11 C -0.380 4.380 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.207 1.207 19 C 0.017 3.983 20 C -0.229 4.229 21 C -0.081 4.081 22 C -0.123 4.123 23 C -0.156 4.156 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.674 -10.157 -2.012 16.366 hybrid contribution 0.418 -0.428 0.458 0.753 sum -12.256 -10.585 -1.555 16.269 Atomic orbital electron populations 1.21688 0.94560 1.02230 1.02167 1.21468 0.95772 0.95340 1.03466 1.22722 0.79666 0.98014 1.01050 1.85973 1.20181 1.27676 1.89580 1.18599 0.91582 0.83524 1.00562 1.21020 0.98805 0.92691 1.10319 1.20771 0.94619 0.96003 0.99363 1.21147 0.93031 0.98635 0.97097 1.20081 1.00488 0.87292 0.87495 1.43760 1.16128 1.58232 1.11466 1.18984 0.84637 1.40873 0.93492 0.92270 1.25018 0.96873 0.99212 0.97871 1.69966 1.25783 1.40359 1.16818 0.86562 0.81837 0.81280 0.78413 1.20726 1.21526 1.20734 1.20832 0.90570 0.92376 0.94531 1.22394 0.99292 1.00672 1.00582 1.20858 1.00056 0.90245 0.96990 1.19225 0.90326 0.96067 1.06645 1.20539 0.98856 0.94762 1.01490 0.92417 0.92446 0.91955 0.91025 0.91011 0.92528 0.92531 0.86804 0.86938 0.87459 0.95047 0.93435 0.93842 0.94793 0.93389 0.94776 0.93167 0.85665 0.92124 0.91945 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.15 6.30 -26.73 -0.17 -1.32 16 3 C 0.06 0.72 4.74 37.16 0.18 0.90 16 4 O -0.32 -5.02 9.18 -19.43 -0.18 -5.19 16 5 C 0.10 1.80 6.66 -39.22 -0.26 1.54 16 6 C -0.21 -3.55 9.04 -39.44 -0.36 -3.91 16 7 C -0.09 -1.64 7.86 -39.61 -0.31 -1.95 16 8 C -0.10 -2.02 5.44 -104.60 -0.57 -2.59 16 9 C 0.17 4.03 5.46 -5.19 -0.03 4.00 16 10 N -0.58 -14.20 2.44 -174.61 -0.43 -14.63 16 11 C -0.25 -6.76 9.48 -15.06 -0.14 -6.90 16 12 H 0.06 1.62 7.93 -52.49 -0.42 1.21 16 13 C 0.01 0.27 4.95 -17.43 -0.09 0.18 16 14 N -0.89 -24.86 11.31 55.49 0.63 -24.23 16 15 Si 0.89 21.31 29.61 -169.99 -5.03 16.28 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.14 3.05 6.44 -4.05 -0.03 3.02 16 20 C -0.17 -3.23 10.20 37.16 0.38 -2.85 16 21 C -0.06 -1.31 9.35 -39.61 -0.37 -1.68 16 22 C -0.12 -2.30 5.89 -104.48 -0.62 -2.92 16 23 C -0.10 -1.62 9.79 36.00 0.35 -1.26 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.65 7.66 -51.93 -0.40 0.26 16 30 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 31 H 0.11 1.62 6.30 -52.48 -0.33 1.29 16 32 H 0.11 1.91 8.02 -52.49 -0.42 1.49 16 33 H 0.11 2.81 5.26 -51.92 -0.27 2.54 16 34 H 0.03 0.69 7.80 -51.93 -0.40 0.29 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.04 0.94 8.09 -51.92 -0.42 0.52 16 37 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.96 6.13 -51.93 -0.32 0.64 16 41 H 0.13 2.79 8.06 -52.48 -0.42 2.37 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 44 H 0.06 0.96 7.53 -51.93 -0.39 0.57 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -28.73 355.20 -8.86 -37.59 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.54 Total: 1.28 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -1.66 Total: -16.45 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.20 Total: -38.86 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.18 Total: -5.19 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.73 -8.86 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876632539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.223 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds