Wall clock time and date at job start Mon Mar 30 2020 02:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47203 * 2 1 4 4 N 1.46502 * 109.47370 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99571 * 270.00521 * 4 3 2 6 6 C 1.53000 * 109.46861 * 269.99425 * 5 4 3 7 7 H 1.08998 * 109.47471 * 60.00383 * 6 5 4 8 8 O 1.42907 * 109.47410 * 300.00517 * 6 5 4 9 9 C 1.50698 * 109.47191 * 180.02562 * 6 5 4 10 10 H 1.08006 * 119.99932 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00401 * 180.02562 * 9 6 5 12 12 N 1.31519 * 119.99501 * 359.97438 * 11 9 6 13 13 Si 1.86796 * 120.00226 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47219 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47373 * 120.00173 * 13 11 9 16 16 H 1.48503 * 109.47229 * 239.99736 * 13 11 9 17 17 C 1.39669 * 119.99748 * 90.00012 * 4 3 2 18 18 C 1.38905 * 120.07711 * 0.02562 * 17 4 3 19 19 C 1.38102 * 119.92398 * 179.72013 * 18 17 4 20 20 C 1.38284 * 120.07730 * 0.28542 * 19 18 17 21 21 C 1.50702 * 119.92910 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47396 * 89.99398 * 21 20 19 23 23 C 1.38287 * 120.14784 * 359.96989 * 20 19 18 24 24 C 1.38104 * 120.07420 * 0.02562 * 23 20 19 25 25 H 1.08995 * 109.47021 * 60.00071 * 1 2 3 26 26 H 1.09006 * 109.47071 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47259 * 299.99530 * 1 2 3 28 28 H 1.09006 * 109.46522 * 240.00257 * 2 1 3 29 29 H 1.09000 * 109.46936 * 120.00411 * 2 1 3 30 30 H 1.09009 * 109.46920 * 60.00203 * 3 2 1 31 31 H 1.09003 * 109.47262 * 300.00516 * 3 2 1 32 32 H 1.08994 * 109.47775 * 29.99713 * 5 4 3 33 33 H 1.09002 * 109.46961 * 150.00104 * 5 4 3 34 34 H 0.96703 * 113.99481 * 299.99818 * 8 6 5 35 35 H 0.96999 * 119.99505 * 180.02562 * 12 11 9 36 36 H 1.08002 * 120.04044 * 0.02562 * 18 17 4 37 37 H 1.08008 * 119.96515 * 180.25651 * 19 18 17 38 38 H 1.08998 * 109.46900 * 209.99776 * 21 20 19 39 39 H 1.09005 * 109.46585 * 329.99345 * 21 20 19 40 40 H 1.09000 * 109.46856 * 60.00544 * 22 21 20 41 41 H 1.08999 * 109.46855 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.47274 * 300.00604 * 22 21 20 43 43 H 1.08007 * 119.96182 * 180.02562 * 23 20 19 44 44 H 1.07997 * 120.03619 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4422 1.2679 6 6 4.4932 2.8846 1.7097 7 1 3.5409 3.3985 1.8405 8 8 5.2651 3.5585 0.7135 9 6 5.2477 2.8844 3.0142 10 1 5.5178 1.9490 3.4817 11 6 5.5923 4.0783 3.6115 12 7 5.2629 5.2174 3.0425 13 14 6.5269 4.0780 5.2289 14 1 6.7744 2.6779 5.6573 15 1 7.8242 4.7785 5.0511 16 1 5.7246 4.7775 6.2644 17 6 4.2028 1.4427 -1.2105 18 6 3.5094 1.4434 -2.4141 19 6 4.2025 1.4494 -3.6085 20 6 5.5853 1.4488 -3.6074 21 6 6.3383 1.4548 -4.9128 22 6 6.5937 2.8993 -5.3476 23 6 6.2788 1.4428 -2.4110 24 6 5.5919 1.4368 -1.2129 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9563 -0.8900 32 1 3.6493 0.9283 2.0277 33 1 5.1904 0.9284 1.1370 34 1 6.1275 3.1550 0.5447 35 1 5.5057 6.0573 3.4626 36 1 2.4293 1.4442 -2.4158 37 1 3.6640 1.4542 -4.5448 38 1 7.2906 0.9400 -4.7852 39 1 5.7487 0.9448 -5.6746 40 1 7.1833 3.4093 -4.5858 41 1 7.1387 2.9036 -6.2916 42 1 5.6415 3.4142 -5.4750 43 1 7.3589 1.4428 -2.4136 44 1 6.1342 1.4325 -0.2789 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930639471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:13 Heat of formation + Delta-G solvation = -39.122969 kcal Electronic energy + Delta-G solvation = -22051.219265 eV Core-core repulsion = 18967.737518 eV Total energy + Delta-G solvation = -3083.481746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.40784 -37.07715 -35.30152 -33.72119 -32.29912 -32.08120 -30.45924 -29.04681 -27.77928 -25.90253 -24.46306 -22.64214 -22.33692 -21.15420 -20.79719 -19.34412 -17.41445 -16.68167 -15.52262 -14.93530 -14.72256 -14.68640 -14.50026 -14.13407 -13.95262 -13.56847 -13.33535 -13.17843 -13.00025 -12.73123 -12.64218 -12.13069 -11.97172 -11.71812 -11.59311 -11.23011 -11.15610 -11.04832 -10.97062 -10.81796 -10.69715 -10.57348 -10.50926 -10.17583 -10.05021 -9.53788 -8.86097 -8.60999 -8.41237 -8.18874 -6.52401 -6.02145 -4.23329 1.95757 2.12187 3.24224 3.32788 3.35372 3.70613 4.35622 4.38017 5.05980 5.14052 5.15346 5.16756 5.23730 5.34283 5.44090 5.46828 5.58121 5.60618 5.75449 5.81065 5.87321 5.89012 5.93290 5.96035 6.02153 6.06887 6.16781 6.20085 6.28895 6.32400 6.39017 6.42476 6.50438 6.56349 6.68527 6.87149 6.91983 7.17449 7.38808 7.65601 7.77727 7.87278 8.11391 8.20681 8.80859 9.39886 9.56209 11.00229 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.005560 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.092718 B = 5034.483988 C = 6680.435783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.124 3.876 4 N -0.615 5.615 5 C 0.093 3.907 6 C 0.217 3.783 7 H 0.053 0.947 8 O -0.555 6.555 9 C -0.576 4.576 10 H 0.056 0.944 11 C 0.081 3.919 12 N -0.856 5.856 13 Si 0.888 3.112 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.241 3.759 18 C -0.209 4.209 19 C -0.073 4.073 20 C -0.161 4.161 21 C -0.071 4.071 22 C -0.146 4.146 23 C -0.070 4.070 24 C -0.183 4.183 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.340 0.660 35 H 0.260 0.740 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.112 0.888 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 -9.173 -11.505 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.000 4.000 4 N -0.322 5.322 5 C -0.030 4.030 6 C 0.158 3.842 7 H 0.071 0.929 8 O -0.358 6.358 9 C -0.614 4.614 10 H 0.075 0.925 11 C -0.125 4.125 12 N -0.492 5.492 13 Si 0.715 3.285 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.209 1.209 17 C 0.137 3.863 18 C -0.232 4.232 19 C -0.091 4.091 20 C -0.163 4.163 21 C -0.108 4.108 22 C -0.204 4.204 23 C -0.088 4.088 24 C -0.205 4.205 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.185 0.815 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.130 0.870 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.036 -8.575 -11.303 14.751 hybrid contribution 0.905 -0.199 1.176 1.497 sum -3.131 -8.773 -10.128 13.760 Atomic orbital electron populations 1.21699 0.95708 1.01418 1.01815 1.21989 0.95486 0.98344 1.02333 1.21379 0.80543 0.95564 1.02490 1.46696 1.04014 1.77947 1.03499 1.22535 0.95629 1.01611 0.83200 1.19741 0.92629 0.85749 0.86047 0.92940 1.86632 1.30659 1.57984 1.60476 1.21643 1.39554 0.92715 1.07535 0.92543 1.25024 0.95034 0.95575 0.96896 1.70101 1.44068 0.97194 1.37822 0.86630 0.79818 0.78189 0.83814 1.19684 1.20848 1.20905 1.17770 0.91230 0.91581 0.85686 1.20546 0.99047 1.12275 0.91330 1.20571 0.93418 0.98479 0.96672 1.19432 0.93544 1.08932 0.94423 1.20324 0.99231 0.96869 0.94378 1.21770 1.01562 0.96624 1.00427 1.20671 0.98780 0.97826 0.91565 1.20700 0.92458 1.09052 0.98327 0.92818 0.92901 0.92597 0.91971 0.91947 0.90895 0.91298 0.91589 0.91729 0.81541 0.93026 0.86830 0.87305 0.91991 0.92150 0.92548 0.93282 0.92806 0.86976 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.14 -1.82 6.26 -26.73 -0.17 -1.99 16 3 C 0.12 1.90 5.16 -4.04 -0.02 1.88 16 4 N -0.61 -11.00 2.55 -171.75 -0.44 -11.43 16 5 C 0.09 1.84 4.94 -4.04 -0.02 1.82 16 6 C 0.22 5.36 3.10 -27.88 -0.09 5.27 16 7 H 0.05 1.46 8.14 -51.93 -0.42 1.03 16 8 O -0.55 -14.25 11.37 -35.23 -0.40 -14.65 16 9 C -0.58 -15.40 8.76 -34.44 -0.30 -15.70 16 10 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 11 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 12 N -0.86 -25.24 12.84 55.43 0.71 -24.53 16 13 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 C 0.24 4.29 6.19 -83.79 -0.52 3.77 16 18 C -0.21 -3.36 9.21 -39.38 -0.36 -3.72 16 19 C -0.07 -1.07 9.69 -39.61 -0.38 -1.45 16 20 C -0.16 -2.34 5.14 -104.59 -0.54 -2.88 16 21 C -0.07 -0.82 6.06 -27.88 -0.17 -0.99 16 22 C -0.15 -1.65 9.90 37.16 0.37 -1.28 16 23 C -0.07 -1.09 9.69 -39.61 -0.38 -1.47 16 24 C -0.18 -3.21 7.78 -39.38 -0.31 -3.51 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.16 8.07 -51.92 -0.42 0.74 16 31 H 0.07 1.01 6.19 -51.93 -0.32 0.69 16 32 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 33 H 0.06 1.25 6.19 -51.93 -0.32 0.93 16 34 H 0.34 8.02 7.03 45.56 0.32 8.34 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.11 1.66 6.14 -52.49 -0.32 1.34 16 37 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.12 2.19 4.79 -52.49 -0.25 1.94 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -29.87 352.89 -9.21 -39.08 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.77 Total: 9.64 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -2.62 Total: -19.30 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.27 Total: -35.96 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.40 Total: -14.65 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.87 -9.21 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930639471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.044 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds