Wall clock time and date at job start Mon Mar 30 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 C 1.53000 * 109.47246 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46833 * 181.78540 * 4 3 2 6 6 C 1.46902 * 110.99528 * 75.93904 * 5 4 3 7 7 C 1.50704 * 109.46895 * 195.85036 * 6 5 4 8 8 H 1.08002 * 120.00147 * 355.88572 * 7 6 5 9 9 C 1.37876 * 119.99852 * 175.88592 * 7 6 5 10 10 N 1.31511 * 119.99822 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00052 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47221 * 90.00066 * 11 9 7 13 13 H 1.48499 * 109.46820 * 210.00137 * 11 9 7 14 14 H 1.48501 * 109.47263 * 329.99912 * 11 9 7 15 15 C 1.46901 * 110.99865 * 199.88497 * 5 4 3 16 16 C 1.50709 * 109.46831 * 66.05274 * 15 5 4 17 17 C 1.38158 * 120.02882 * 259.72288 * 16 15 5 18 18 C 1.38244 * 120.05451 * 179.76972 * 17 16 15 19 19 C 1.38279 * 120.11187 * 0.50633 * 18 17 16 20 20 C 1.50699 * 119.97409 * 179.77133 * 19 18 17 21 21 C 1.38126 * 120.05962 * 359.74527 * 19 18 17 22 22 C 1.38716 * 120.02493 * 79.99611 * 16 15 5 23 23 O 1.35903 * 120.05632 * 0.02562 * 22 16 15 24 24 H 1.09001 * 109.47445 * 299.99708 * 1 2 3 25 25 H 1.08999 * 109.47523 * 59.99920 * 1 2 3 26 26 H 1.08997 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47204 * 239.99586 * 2 1 3 28 28 H 1.09006 * 109.47218 * 119.99821 * 2 1 3 29 29 H 1.09006 * 109.47077 * 59.99766 * 3 2 1 30 30 H 1.08995 * 109.47526 * 300.00173 * 3 2 1 31 31 H 1.08996 * 109.46552 * 61.79642 * 4 3 2 32 32 H 1.08992 * 109.47461 * 301.79124 * 4 3 2 33 33 H 1.08998 * 109.47620 * 315.84934 * 6 5 4 34 34 H 1.09007 * 109.47329 * 75.85109 * 6 5 4 35 35 H 0.97001 * 120.00037 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47247 * 186.04781 * 15 5 4 37 37 H 1.08998 * 109.47351 * 306.05512 * 15 5 4 38 38 H 1.08008 * 119.96996 * 0.02562 * 17 16 15 39 39 H 1.08002 * 119.94195 * 180.25558 * 18 17 16 40 40 H 1.09005 * 109.47192 * 269.97657 * 20 19 18 41 41 H 1.09003 * 109.47133 * 29.97435 * 20 19 18 42 42 H 1.08999 * 109.47443 * 149.97761 * 20 19 18 43 43 H 1.07995 * 120.03343 * 180.02562 * 21 19 18 44 44 H 0.96698 * 113.99604 * 89.99997 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0596 2.8268 0.0438 6 6 3.9203 3.3926 1.3923 7 6 4.0555 4.8920 1.3244 8 1 4.2936 5.3708 0.3860 9 6 3.8752 5.6525 2.4602 10 7 3.9927 6.9610 2.4008 11 14 3.4641 4.8243 4.0834 12 1 4.7205 4.4955 4.8035 13 1 2.6435 5.7423 4.9135 14 1 2.7015 3.5769 3.8235 15 6 5.4512 2.9077 -0.4198 16 6 5.5149 2.5504 -1.8825 17 6 5.9155 1.2857 -2.2685 18 6 5.9695 0.9559 -3.6100 19 6 5.6331 1.8935 -4.5690 20 6 5.6981 1.5323 -6.0306 21 6 5.2370 3.1609 -4.1886 22 6 5.1768 3.4928 -2.8426 23 8 4.7883 4.7394 -2.4656 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9336 0.9566 -0.9048 32 1 3.9330 0.9012 0.8743 33 1 2.9412 3.1340 1.7956 34 1 4.6983 2.9865 2.0389 35 1 3.8662 7.4961 3.1999 36 1 5.8233 3.9222 -0.2771 37 1 6.0655 2.2116 0.1513 38 1 6.1826 0.5529 -1.5215 39 1 6.2790 -0.0345 -3.9095 40 1 6.6911 1.7610 -6.4176 41 1 5.4976 0.4676 -6.1510 42 1 4.9527 2.1068 -6.5805 43 1 4.9739 3.8927 -4.9379 44 1 5.5162 5.3710 -2.3865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140950262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:44 Heat of formation + Delta-G solvation = -32.243773 kcal Electronic energy + Delta-G solvation = -22010.893189 eV Core-core repulsion = 18927.709747 eV Total energy + Delta-G solvation = -3083.183442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.76397 -37.15133 -36.42426 -34.41374 -32.87480 -32.03465 -29.64279 -29.02648 -28.52733 -26.27619 -23.95257 -22.65128 -22.30071 -21.09263 -20.50406 -19.63742 -17.48317 -16.80058 -15.79461 -15.62898 -15.33622 -14.84671 -14.44009 -14.16335 -13.98688 -13.68550 -13.41957 -13.36454 -12.90952 -12.55860 -12.50669 -12.36266 -12.18163 -11.99367 -11.62436 -11.45109 -11.31804 -11.13995 -10.90462 -10.79315 -10.64954 -10.46704 -10.30147 -10.02870 -9.77057 -9.72410 -9.21010 -8.54951 -8.51145 -8.14078 -7.26324 -5.98602 -3.94024 1.49852 1.53232 3.30915 3.38941 3.41135 3.80921 4.47061 4.58396 4.81987 4.93578 5.01535 5.20392 5.23393 5.32756 5.33626 5.40166 5.44287 5.48131 5.54073 5.69398 5.74078 5.78653 5.89785 6.00330 6.04195 6.08505 6.14434 6.16631 6.22876 6.26159 6.37838 6.51001 6.54521 6.67178 6.68687 6.79382 6.85987 6.92745 7.02401 7.09163 7.70993 8.00403 8.11808 8.19664 8.74921 9.15051 9.64230 11.14677 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.005856 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.988791 B = 4780.659617 C = 6178.137433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.050 3.950 5 N -0.512 5.512 6 C 0.160 3.840 7 C -0.500 4.500 8 H 0.086 0.914 9 C 0.067 3.933 10 N -0.902 5.902 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.106 3.894 16 C -0.098 4.098 17 C -0.101 4.101 18 C -0.137 4.137 19 C -0.082 4.082 20 C -0.111 4.111 21 C -0.154 4.154 22 C 0.140 3.860 23 O -0.477 6.477 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.020 0.980 33 H 0.032 0.968 34 H -0.019 1.019 35 H 0.262 0.738 36 H 0.095 0.905 37 H 0.025 0.975 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.123 0.877 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -13.201 -11.894 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.078 4.078 5 N -0.235 5.235 6 C 0.034 3.966 7 C -0.539 4.539 8 H 0.104 0.896 9 C -0.133 4.133 10 N -0.542 5.542 11 Si 0.698 3.302 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.021 4.021 16 C -0.099 4.099 17 C -0.120 4.120 18 C -0.155 4.155 19 C -0.082 4.082 20 C -0.167 4.167 21 C -0.173 4.173 22 C 0.094 3.906 23 O -0.286 6.286 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.050 0.950 34 H -0.002 1.002 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.043 0.957 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.784 -12.982 -12.071 17.817 hybrid contribution 0.676 -0.583 1.605 1.837 sum 2.460 -13.565 -10.466 17.309 Atomic orbital electron populations 1.21750 0.96169 1.00853 1.01958 1.21498 0.95622 0.97651 1.01242 1.21553 0.95278 0.95215 1.02991 1.22141 0.95537 0.90783 0.99357 1.61922 1.17942 1.16017 1.27649 1.20260 0.95540 0.96571 0.84205 1.21100 1.46737 0.88791 0.97223 0.89596 1.24882 0.95315 0.94687 0.98465 1.69889 1.50919 1.04378 1.28994 0.86946 0.78788 0.79829 0.84673 1.20497 1.21248 1.19234 1.20813 0.90449 1.02128 0.88749 1.20419 0.98896 0.93938 0.96680 1.20947 0.99693 0.95582 0.95787 1.20883 1.02928 0.99082 0.92649 1.19663 0.99399 0.93507 0.95658 1.20751 1.02074 1.01749 0.92149 1.21295 1.03294 0.97157 0.95526 1.18307 0.95165 0.86650 0.90436 1.84967 1.35640 1.17852 1.90155 0.92765 0.92767 0.93333 0.92518 0.92611 0.91742 0.91467 0.91806 0.96220 0.95043 1.00186 0.92848 0.88686 0.95709 0.86321 0.86490 0.91449 0.91760 0.91714 0.85906 0.75744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.15 0.37 -1.48 16 2 C -0.12 -1.67 5.93 -26.74 -0.16 -1.83 16 3 C -0.11 -1.93 5.35 -26.73 -0.14 -2.07 16 4 C 0.05 0.91 4.84 -3.82 -0.02 0.89 16 5 N -0.51 -10.94 4.37 -237.51 -1.04 -11.97 16 6 C 0.16 3.94 3.64 -4.97 -0.02 3.92 16 7 C -0.50 -14.19 9.07 -34.44 -0.31 -14.51 16 8 H 0.09 2.64 7.68 -52.49 -0.40 2.24 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 11 Si 0.87 21.72 27.55 -169.99 -4.68 17.03 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.27 -6.47 6.43 56.52 0.36 -6.10 16 15 C 0.11 2.04 4.60 -4.97 -0.02 2.02 16 16 C -0.10 -1.64 4.67 -104.47 -0.49 -2.13 16 17 C -0.10 -1.43 8.25 -39.61 -0.33 -1.76 16 18 C -0.14 -1.72 9.70 -39.56 -0.38 -2.10 16 19 C -0.08 -1.02 5.88 -104.65 -0.62 -1.64 16 20 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 21 C -0.15 -2.18 9.64 -39.43 -0.38 -2.56 16 22 C 0.14 2.32 6.68 -39.21 -0.26 2.06 16 23 O -0.48 -8.56 12.74 -19.44 -0.25 -8.81 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.22 6.72 -51.93 -0.35 0.87 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.07 5.76 -51.93 -0.30 0.77 16 32 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 33 H 0.03 0.79 5.29 -51.93 -0.27 0.52 16 34 H -0.02 -0.48 7.69 -51.93 -0.40 -0.88 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.09 2.01 6.73 -51.93 -0.35 1.66 16 37 H 0.02 0.45 7.98 -51.93 -0.41 0.04 16 38 H 0.12 1.51 8.04 -52.48 -0.42 1.09 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 43 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.39 5.36 9.06 45.56 0.41 5.77 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -31.99 353.43 -9.10 -41.09 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.73 Total: 4.20 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.50 Total: -19.98 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.26 Total: -38.87 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.25 Total: -8.81 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.68 Total: 17.03 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.99 -9.10 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140950262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.846 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds