Wall clock time and date at job start Mon Mar 30 2020 01:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 C 1.53000 * 109.47246 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46833 * 181.78540 * 4 3 2 6 6 C 1.46902 * 110.99528 * 75.93904 * 5 4 3 7 7 C 1.50704 * 109.46895 * 195.85036 * 6 5 4 8 8 H 1.08002 * 120.00147 * 355.88572 * 7 6 5 9 9 C 1.37876 * 119.99852 * 175.88592 * 7 6 5 10 10 N 1.31511 * 119.99822 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00052 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47221 * 90.00066 * 11 9 7 13 13 H 1.48499 * 109.46820 * 210.00137 * 11 9 7 14 14 H 1.48501 * 109.47263 * 329.99912 * 11 9 7 15 15 C 1.46901 * 110.99865 * 199.88497 * 5 4 3 16 16 C 1.50709 * 109.46831 * 66.05274 * 15 5 4 17 17 C 1.38158 * 120.02882 * 259.72288 * 16 15 5 18 18 C 1.38244 * 120.05451 * 179.76972 * 17 16 15 19 19 C 1.38279 * 120.11187 * 0.50633 * 18 17 16 20 20 C 1.50699 * 119.97409 * 179.77133 * 19 18 17 21 21 C 1.38126 * 120.05962 * 359.74527 * 19 18 17 22 22 C 1.38716 * 120.02493 * 79.99611 * 16 15 5 23 23 O 1.35903 * 120.05632 * 0.02562 * 22 16 15 24 24 H 1.09001 * 109.47445 * 299.99708 * 1 2 3 25 25 H 1.08999 * 109.47523 * 59.99920 * 1 2 3 26 26 H 1.08997 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47204 * 239.99586 * 2 1 3 28 28 H 1.09006 * 109.47218 * 119.99821 * 2 1 3 29 29 H 1.09006 * 109.47077 * 59.99766 * 3 2 1 30 30 H 1.08995 * 109.47526 * 300.00173 * 3 2 1 31 31 H 1.08996 * 109.46552 * 61.79642 * 4 3 2 32 32 H 1.08992 * 109.47461 * 301.79124 * 4 3 2 33 33 H 1.08998 * 109.47620 * 315.84934 * 6 5 4 34 34 H 1.09007 * 109.47329 * 75.85109 * 6 5 4 35 35 H 0.97001 * 120.00037 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47247 * 186.04781 * 15 5 4 37 37 H 1.08998 * 109.47351 * 306.05512 * 15 5 4 38 38 H 1.08008 * 119.96996 * 0.02562 * 17 16 15 39 39 H 1.08002 * 119.94195 * 180.25558 * 18 17 16 40 40 H 1.09005 * 109.47192 * 269.97657 * 20 19 18 41 41 H 1.09003 * 109.47133 * 29.97435 * 20 19 18 42 42 H 1.08999 * 109.47443 * 149.97761 * 20 19 18 43 43 H 1.07995 * 120.03343 * 180.02562 * 21 19 18 44 44 H 0.96698 * 113.99604 * 89.99997 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0596 2.8268 0.0438 6 6 3.9203 3.3926 1.3923 7 6 4.0555 4.8920 1.3244 8 1 4.2936 5.3708 0.3860 9 6 3.8752 5.6525 2.4602 10 7 3.9927 6.9610 2.4008 11 14 3.4641 4.8243 4.0834 12 1 4.7205 4.4955 4.8035 13 1 2.6435 5.7423 4.9135 14 1 2.7015 3.5769 3.8235 15 6 5.4512 2.9077 -0.4198 16 6 5.5149 2.5504 -1.8825 17 6 5.9155 1.2857 -2.2685 18 6 5.9695 0.9559 -3.6100 19 6 5.6331 1.8935 -4.5690 20 6 5.6981 1.5323 -6.0306 21 6 5.2370 3.1609 -4.1886 22 6 5.1768 3.4928 -2.8426 23 8 4.7883 4.7394 -2.4656 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9336 0.9566 -0.9048 32 1 3.9330 0.9012 0.8743 33 1 2.9412 3.1340 1.7956 34 1 4.6983 2.9865 2.0389 35 1 3.8662 7.4961 3.1999 36 1 5.8233 3.9222 -0.2771 37 1 6.0655 2.2116 0.1513 38 1 6.1826 0.5529 -1.5215 39 1 6.2790 -0.0345 -3.9095 40 1 6.6911 1.7610 -6.4176 41 1 5.4976 0.4676 -6.1510 42 1 4.9527 2.1068 -6.5805 43 1 4.9739 3.8927 -4.9379 44 1 5.5162 5.3710 -2.3865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140950262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:43 Heat of formation + Delta-G solvation = -53.270279 kcal Electronic energy + Delta-G solvation = -22011.804967 eV Core-core repulsion = 18927.709747 eV Total energy + Delta-G solvation = -3084.095220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96485 -38.68249 -37.65743 -35.70027 -34.71643 -33.51376 -30.77945 -30.49768 -29.98018 -27.71274 -25.19982 -24.30220 -23.51570 -22.40445 -21.71005 -21.22276 -18.99904 -18.69450 -16.99410 -16.96928 -16.83503 -16.13031 -16.00347 -15.66826 -15.52501 -14.84728 -14.72100 -14.44733 -14.29689 -14.19728 -13.81666 -13.44653 -13.43324 -13.31778 -13.18641 -12.70127 -12.60431 -12.44777 -12.42291 -12.19518 -12.00991 -11.81695 -11.75786 -11.67212 -11.36061 -11.31131 -11.14780 -10.75312 -9.65581 -9.29516 -8.92719 -8.24324 -6.25346 0.37479 0.42884 1.32115 1.34630 1.44730 2.35363 2.68124 3.07527 3.34146 3.46391 3.86440 3.93903 4.02908 4.11381 4.16297 4.30055 4.32319 4.44091 4.52128 4.58578 4.64114 4.68799 4.76878 4.82265 4.88853 4.89794 4.95616 4.99733 5.02346 5.07852 5.12028 5.12689 5.27761 5.31904 5.40922 5.45593 5.49559 5.61725 5.66271 5.71201 6.02842 6.07717 6.44146 6.72574 6.82500 6.97463 7.37009 8.92284 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.005856 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.988791 B = 4780.659617 C = 6178.137433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.109 4.109 4 C 0.053 3.947 5 N -0.531 5.531 6 C 0.172 3.828 7 C -0.504 4.504 8 H 0.044 0.956 9 C 0.009 3.991 10 N -0.948 5.948 11 Si 0.939 3.061 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.253 1.253 15 C 0.113 3.887 16 C -0.121 4.121 17 C -0.100 4.100 18 C -0.131 4.131 19 C -0.075 4.075 20 C -0.109 4.109 21 C -0.162 4.162 22 C 0.114 3.886 23 O -0.506 6.506 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.027 0.973 33 H 0.028 0.972 34 H -0.018 1.018 35 H 0.265 0.735 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.135 0.865 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.132 0.868 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -16.891 -12.739 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.147 4.147 4 C -0.075 4.075 5 N -0.254 5.254 6 C 0.046 3.954 7 C -0.543 4.543 8 H 0.062 0.938 9 C -0.188 4.188 10 N -0.589 5.589 11 Si 0.764 3.236 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.177 1.177 15 C -0.014 4.014 16 C -0.122 4.122 17 C -0.118 4.118 18 C -0.149 4.149 19 C -0.075 4.075 20 C -0.166 4.166 21 C -0.180 4.180 22 C 0.069 3.931 23 O -0.317 6.317 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.000 1.000 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.153 0.847 39 H 0.170 0.830 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.150 0.850 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.831 -16.693 -12.938 21.199 hybrid contribution 0.722 0.591 1.698 1.938 sum 2.553 -16.102 -11.240 19.802 Atomic orbital electron populations 1.21749 0.95173 1.02229 1.01526 1.21447 0.96471 0.94935 1.02376 1.21530 0.94703 0.97521 1.00977 1.22208 0.95998 0.88853 1.00425 1.61818 1.19657 1.18416 1.25550 1.19973 0.95115 0.94070 0.86289 1.21286 1.46147 0.91119 0.95733 0.93773 1.25766 0.95211 0.95220 1.02605 1.70046 1.52440 1.06150 1.30300 0.85831 0.79118 0.79168 0.79531 1.19225 1.20748 1.17709 1.20648 0.89296 1.00382 0.91093 1.20254 1.01628 0.95539 0.94792 1.21135 0.98885 0.94545 0.97283 1.21277 1.01440 1.00502 0.91643 1.20119 0.97187 0.92425 0.97798 1.20831 1.03204 1.03035 0.89498 1.21456 1.03564 0.98530 0.94488 1.18622 0.96706 0.86043 0.91771 1.84918 1.37047 1.19150 1.90573 0.93509 0.92995 0.91014 0.91014 0.91734 0.94088 0.93143 0.90104 0.95452 0.95392 1.00042 0.92655 0.92219 0.94778 0.84670 0.82967 0.89884 0.89863 0.91233 0.84989 0.74812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.11 -2.85 5.93 30.59 0.18 -2.67 16 3 C -0.11 -3.69 5.35 30.59 0.16 -3.53 16 4 C 0.05 1.87 4.84 86.30 0.42 2.29 16 5 N -0.53 -23.23 4.37 -905.33 -3.96 -27.19 16 6 C 0.17 8.65 3.64 85.56 0.31 8.96 16 7 C -0.50 -30.03 9.07 25.60 0.23 -29.80 16 8 H 0.04 2.93 7.68 -2.91 -0.02 2.91 16 9 C 0.01 0.52 5.47 84.65 0.46 0.99 16 10 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 11 Si 0.94 45.34 27.55 68.60 1.89 47.23 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.25 -11.54 6.43 99.48 0.64 -10.90 16 15 C 0.11 4.51 4.60 85.56 0.39 4.90 16 16 C -0.12 -4.07 4.67 -19.77 -0.09 -4.16 16 17 C -0.10 -2.61 8.25 22.25 0.18 -2.43 16 18 C -0.13 -2.80 9.70 22.28 0.22 -2.58 16 19 C -0.07 -1.66 5.88 -19.88 -0.12 -1.78 16 20 C -0.11 -1.57 10.01 71.24 0.71 -0.86 16 21 C -0.16 -4.47 9.64 22.37 0.22 -4.26 16 22 C 0.11 3.89 6.68 22.51 0.15 4.04 16 23 O -0.51 -19.72 12.74 -92.46 -1.18 -20.89 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.04 1.55 6.72 -2.38 -0.02 1.54 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.57 5.76 -2.39 -0.01 2.56 16 32 H 0.03 0.93 8.00 -2.39 -0.02 0.91 16 33 H 0.03 1.42 5.29 -2.39 -0.01 1.41 16 34 H -0.02 -0.89 7.69 -2.38 -0.02 -0.91 16 35 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.06 2.74 6.73 -2.39 -0.02 2.72 16 37 H 0.03 1.26 7.98 -2.39 -0.02 1.24 16 38 H 0.14 3.03 8.04 -2.91 -0.02 3.01 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 42 H 0.07 0.96 8.08 -2.39 -0.02 0.95 16 43 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 44 H 0.39 12.51 9.06 -74.06 -0.67 11.84 16 Total: -1.00 -72.16 353.43 1.43 -70.73 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.23 Total: 23.76 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 4.15 Total: -33.52 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.66 Total: -87.31 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -1.18 Total: -20.89 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.89 Total: 47.23 kcal Total: -72.16 1.43 -70.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140950262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.460 kcal (2) G-P(sol) polarization free energy of solvation -72.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds