Wall clock time and date at job start Mon Mar 30 2020 02:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 O 1.42898 * 109.46921 * 180.02562 * 3 2 1 5 5 C 1.35896 * 117.00211 * 179.97438 * 4 3 2 6 6 C 1.38817 * 120.01608 * 0.02562 * 5 4 3 7 7 C 1.38172 * 120.09091 * 179.97438 * 6 5 4 8 8 C 1.38158 * 120.13171 * 359.78850 * 7 6 5 9 9 C 1.50693 * 119.98327 * 180.23267 * 8 7 6 10 10 C 1.38933 * 120.02949 * 0.46690 * 8 7 6 11 11 N 1.39675 * 120.04084 * 179.79018 * 10 8 7 12 12 C 1.46502 * 119.99286 * 179.72250 * 11 10 8 13 13 C 1.53004 * 109.46437 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.46983 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47286 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99866 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00200 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00188 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99996 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47113 * 90.00024 * 19 17 15 21 21 H 1.48510 * 109.47188 * 210.00161 * 19 17 15 22 22 H 1.48497 * 109.46897 * 330.00054 * 19 17 15 23 23 C 1.38569 * 120.02040 * 179.97438 * 5 4 3 24 24 H 1.09000 * 109.46813 * 299.99866 * 1 2 3 25 25 H 1.09000 * 109.47200 * 60.00135 * 1 2 3 26 26 H 1.08998 * 109.46705 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46813 * 240.00134 * 2 1 3 28 28 H 1.09000 * 109.47200 * 119.99865 * 2 1 3 29 29 H 1.08992 * 109.47491 * 60.00180 * 3 2 1 30 30 H 1.09000 * 109.47150 * 299.99896 * 3 2 1 31 31 H 1.07998 * 119.95179 * 359.97438 * 6 5 4 32 32 H 1.08003 * 119.93607 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46989 * 270.23221 * 9 8 7 34 34 H 1.08996 * 109.47211 * 30.23168 * 9 8 7 35 35 H 1.08998 * 109.47028 * 150.23612 * 9 8 7 36 36 H 0.96995 * 120.00164 * 359.44675 * 11 10 8 37 37 H 1.08997 * 109.47359 * 299.99108 * 12 11 10 38 38 H 1.08997 * 109.47233 * 60.00377 * 12 11 10 39 39 H 1.08992 * 109.47421 * 299.99839 * 13 12 11 40 40 H 1.08999 * 109.47459 * 60.00479 * 13 12 11 41 41 H 1.08992 * 109.47085 * 300.00258 * 14 13 12 42 42 H 1.08999 * 109.46457 * 60.00079 * 14 13 12 43 43 H 0.96998 * 120.00171 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.06396 * 0.04294 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0859 2.6534 -0.0012 6 6 3.3302 3.8179 -0.0007 7 6 3.9559 5.0498 -0.0008 8 6 5.3353 5.1271 0.0030 9 6 6.0142 6.4724 0.0082 10 6 6.0968 3.9650 -0.0029 11 7 7.4914 4.0429 -0.0034 12 6 8.2934 2.8168 -0.0035 13 6 9.7797 3.1798 -0.0048 14 6 10.6174 1.8995 -0.0042 15 6 12.0813 2.2569 -0.0062 16 1 12.3841 3.2936 -0.0072 17 6 13.0343 1.2606 -0.0065 18 7 14.3119 1.5725 -0.0077 19 14 12.5107 -0.5326 -0.0054 20 1 12.3708 -1.0083 -1.4051 21 1 13.5365 -1.3474 0.6942 22 1 11.2086 -0.6676 0.6958 23 6 5.4697 2.7264 -0.0013 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 2.2518 3.7607 -0.0002 32 1 3.3655 5.9542 0.0000 33 1 6.1769 6.8012 -1.0183 34 1 5.3839 7.1954 0.5258 35 1 6.9730 6.3935 0.5206 36 1 7.9288 4.9086 -0.0079 37 1 8.0627 2.2318 0.8868 38 1 8.0619 2.2313 -0.8932 39 1 10.0101 3.7647 -0.8952 40 1 10.0115 3.7656 0.8847 41 1 10.3869 1.3149 0.8864 42 1 10.3856 1.3134 -0.8935 43 1 14.9823 0.8715 -0.0076 44 1 6.0592 1.8215 -0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:41 Heat of formation + Delta-G solvation = -41.678525 kcal Electronic energy + Delta-G solvation = -20610.092295 eV Core-core repulsion = 17526.499731 eV Total energy + Delta-G solvation = -3083.592564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.23952 -38.43351 -35.89034 -34.30018 -33.48205 -31.94094 -31.59236 -29.37391 -27.40540 -26.43029 -25.75025 -23.43692 -22.22876 -21.34793 -20.74475 -20.15624 -18.23575 -16.91967 -16.45384 -16.35710 -15.47661 -15.16636 -14.99261 -14.75741 -14.36443 -14.15166 -13.68278 -13.59427 -13.55234 -12.95714 -12.66452 -12.54725 -12.47288 -12.17046 -12.10540 -11.91522 -11.52051 -11.42516 -11.39417 -11.06260 -10.98226 -10.73277 -10.71408 -10.10677 -9.92511 -9.71409 -9.65087 -9.23390 -8.56201 -8.18285 -7.23559 -6.06662 -4.05410 1.52190 1.67865 3.03651 3.30281 3.37814 3.41449 3.70522 3.89406 4.43566 4.56768 4.57247 4.85419 4.88843 5.00882 5.08938 5.10118 5.16754 5.26888 5.27227 5.36358 5.38674 5.59520 5.59891 5.62543 5.65257 5.72503 5.78066 5.80164 5.87985 5.95872 6.00203 6.33110 6.42067 6.44251 6.46604 6.61080 6.71260 6.77650 7.21604 7.35610 7.37653 7.54574 7.75826 7.89924 8.50246 8.97342 9.55415 11.06657 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.003296 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.088829 B = 8492.767075 C =10167.895099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.061 3.939 4 O -0.317 6.317 5 C 0.170 3.830 6 C -0.272 4.272 7 C -0.036 4.036 8 C -0.204 4.204 9 C -0.100 4.100 10 C 0.261 3.739 11 N -0.737 5.737 12 C 0.116 3.884 13 C -0.113 4.113 14 C -0.010 4.010 15 C -0.522 4.522 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.232 4.232 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.401 0.599 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.014 0.986 43 H 0.263 0.737 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.423 3.487 0.032 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.014 4.014 4 O -0.231 6.231 5 C 0.124 3.876 6 C -0.292 4.292 7 C -0.055 4.055 8 C -0.209 4.209 9 C -0.157 4.157 10 C 0.154 3.846 11 N -0.365 5.365 12 C -0.008 4.008 13 C -0.150 4.150 14 C -0.048 4.048 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.255 4.255 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.237 0.763 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.036 0.964 42 H 0.032 0.968 43 H 0.073 0.927 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.023 3.019 0.039 27.191 hybrid contribution -0.108 -0.538 -0.027 0.549 sum -27.131 2.481 0.012 27.245 Atomic orbital electron populations 1.21687 0.94373 1.02447 1.02132 1.21498 0.95905 0.95094 1.03796 1.22812 0.78817 0.98464 1.01329 1.86031 1.20980 1.27537 1.88552 1.18587 0.91512 0.83679 0.93810 1.20847 0.99265 0.92247 1.16884 1.20463 0.93058 0.96653 0.95337 1.19258 0.93499 0.93894 1.14228 1.20513 0.99976 0.93542 1.01624 1.17334 0.83964 0.92309 0.91008 1.45066 1.01959 1.09308 1.80153 1.21666 0.91999 0.86247 1.00843 1.21666 0.90804 1.00854 1.01723 1.19499 0.95836 0.92952 0.96550 1.21098 0.88660 0.95187 1.51042 0.91041 1.25034 0.94815 0.99180 0.94488 1.69912 1.00013 1.33255 1.51012 0.86768 0.78734 0.85176 0.78563 1.20246 1.21359 1.18929 1.19750 0.91637 0.97121 1.17041 0.92412 0.92407 0.91789 0.90814 0.90813 0.92153 0.92161 0.86329 0.86282 0.92000 0.91918 0.92276 0.76276 0.92393 0.92412 0.92178 0.92166 0.96357 0.96800 0.92695 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.95 6.30 -26.73 -0.17 -1.12 16 3 C 0.06 0.56 4.74 37.16 0.18 0.74 16 4 O -0.32 -4.16 10.13 -19.41 -0.20 -4.35 16 5 C 0.17 2.35 6.68 -39.25 -0.26 2.09 16 6 C -0.27 -3.25 9.04 -39.39 -0.36 -3.61 16 7 C -0.04 -0.42 9.69 -39.63 -0.38 -0.80 16 8 C -0.20 -2.58 5.90 -104.40 -0.62 -3.20 16 9 C -0.10 -1.02 9.56 36.00 0.34 -0.67 16 10 C 0.26 3.76 6.63 -83.81 -0.56 3.21 16 11 N -0.74 -10.65 5.63 -58.65 -0.33 -10.98 16 12 C 0.12 1.88 4.91 -4.04 -0.02 1.86 16 13 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 14 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 15 C -0.52 -14.80 9.66 -34.44 -0.33 -15.14 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 19 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 23 C -0.23 -3.48 9.25 -39.24 -0.36 -3.84 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.12 1.15 6.29 -52.49 -0.33 0.82 16 32 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.06 0.60 6.55 -51.93 -0.34 0.26 16 36 H 0.40 5.26 6.47 -40.82 -0.26 4.99 16 37 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 38 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 42 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.13 1.99 6.73 -52.49 -0.35 1.64 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -31.26 354.59 -9.08 -40.34 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.49 Total: 1.43 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -2.52 Total: -21.75 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.44 Total: -38.08 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.20 Total: -4.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.26 -9.08 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.337 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds