Wall clock time and date at job start Mon Mar 30 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 O 1.42898 * 109.46921 * 180.02562 * 3 2 1 5 5 C 1.35896 * 117.00211 * 179.97438 * 4 3 2 6 6 C 1.38817 * 120.01608 * 0.02562 * 5 4 3 7 7 C 1.38172 * 120.09091 * 179.97438 * 6 5 4 8 8 C 1.38158 * 120.13171 * 359.78850 * 7 6 5 9 9 C 1.50693 * 119.98327 * 180.23267 * 8 7 6 10 10 C 1.38933 * 120.02949 * 0.46690 * 8 7 6 11 11 N 1.39675 * 120.04084 * 179.79018 * 10 8 7 12 12 C 1.46502 * 119.99286 * 179.72250 * 11 10 8 13 13 C 1.53004 * 109.46437 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.46983 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47286 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99866 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00200 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00188 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99996 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47113 * 90.00024 * 19 17 15 21 21 H 1.48510 * 109.47188 * 210.00161 * 19 17 15 22 22 H 1.48497 * 109.46897 * 330.00054 * 19 17 15 23 23 C 1.38569 * 120.02040 * 179.97438 * 5 4 3 24 24 H 1.09000 * 109.46813 * 299.99866 * 1 2 3 25 25 H 1.09000 * 109.47200 * 60.00135 * 1 2 3 26 26 H 1.08998 * 109.46705 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46813 * 240.00134 * 2 1 3 28 28 H 1.09000 * 109.47200 * 119.99865 * 2 1 3 29 29 H 1.08992 * 109.47491 * 60.00180 * 3 2 1 30 30 H 1.09000 * 109.47150 * 299.99896 * 3 2 1 31 31 H 1.07998 * 119.95179 * 359.97438 * 6 5 4 32 32 H 1.08003 * 119.93607 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46989 * 270.23221 * 9 8 7 34 34 H 1.08996 * 109.47211 * 30.23168 * 9 8 7 35 35 H 1.08998 * 109.47028 * 150.23612 * 9 8 7 36 36 H 0.96995 * 120.00164 * 359.44675 * 11 10 8 37 37 H 1.08997 * 109.47359 * 299.99108 * 12 11 10 38 38 H 1.08997 * 109.47233 * 60.00377 * 12 11 10 39 39 H 1.08992 * 109.47421 * 299.99839 * 13 12 11 40 40 H 1.08999 * 109.47459 * 60.00479 * 13 12 11 41 41 H 1.08992 * 109.47085 * 300.00258 * 14 13 12 42 42 H 1.08999 * 109.46457 * 60.00079 * 14 13 12 43 43 H 0.96998 * 120.00171 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.06396 * 0.04294 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0859 2.6534 -0.0012 6 6 3.3302 3.8179 -0.0007 7 6 3.9559 5.0498 -0.0008 8 6 5.3353 5.1271 0.0030 9 6 6.0142 6.4724 0.0082 10 6 6.0968 3.9650 -0.0029 11 7 7.4914 4.0429 -0.0034 12 6 8.2934 2.8168 -0.0035 13 6 9.7797 3.1798 -0.0048 14 6 10.6174 1.8995 -0.0042 15 6 12.0813 2.2569 -0.0062 16 1 12.3841 3.2936 -0.0072 17 6 13.0343 1.2606 -0.0065 18 7 14.3119 1.5725 -0.0077 19 14 12.5107 -0.5326 -0.0054 20 1 12.3708 -1.0083 -1.4051 21 1 13.5365 -1.3474 0.6942 22 1 11.2086 -0.6676 0.6958 23 6 5.4697 2.7264 -0.0013 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 2.2518 3.7607 -0.0002 32 1 3.3655 5.9542 0.0000 33 1 6.1769 6.8012 -1.0183 34 1 5.3839 7.1954 0.5258 35 1 6.9730 6.3935 0.5206 36 1 7.9288 4.9086 -0.0079 37 1 8.0627 2.2318 0.8868 38 1 8.0619 2.2313 -0.8932 39 1 10.0101 3.7647 -0.8952 40 1 10.0115 3.7656 0.8847 41 1 10.3869 1.3149 0.8864 42 1 10.3856 1.3134 -0.8935 43 1 14.9823 0.8715 -0.0076 44 1 6.0592 1.8215 -0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168436895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:40 Heat of formation + Delta-G solvation = -59.166173 kcal Electronic energy + Delta-G solvation = -20610.850616 eV Core-core repulsion = 17526.499731 eV Total energy + Delta-G solvation = -3084.350885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18851 -39.40152 -37.17733 -35.36084 -34.85635 -33.51221 -32.70638 -30.62287 -28.61071 -27.54550 -26.57788 -24.94679 -23.03061 -22.67514 -21.75630 -21.50926 -19.24093 -18.94114 -17.49871 -17.20213 -16.51717 -16.39332 -16.37889 -16.01741 -15.64959 -15.15511 -14.80890 -14.57429 -14.51456 -14.43120 -13.91146 -13.74162 -13.72059 -13.05793 -13.03775 -12.84582 -12.77156 -12.70842 -12.31071 -12.17134 -12.13963 -11.86028 -11.72926 -11.66756 -11.55282 -11.45236 -11.34173 -10.78896 -10.77194 -9.18133 -8.30813 -8.27804 -6.35257 0.54492 0.68600 1.36017 1.37564 1.49583 2.17009 2.35273 2.61072 2.90993 3.04700 3.88739 3.96524 4.02526 4.05744 4.18981 4.20457 4.20659 4.32416 4.37759 4.48311 4.51985 4.56963 4.62011 4.77657 4.82484 4.86520 4.87241 4.89472 4.96486 5.01799 5.12421 5.17153 5.18513 5.34790 5.38008 5.42503 5.50228 5.53800 5.62369 5.66108 5.79159 6.24187 6.32720 6.58784 6.72698 6.83727 7.29527 8.85837 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.003296 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.088829 B = 8492.767075 C =10167.895099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.054 3.946 4 O -0.338 6.338 5 C 0.157 3.843 6 C -0.268 4.268 7 C -0.035 4.035 8 C -0.209 4.209 9 C -0.099 4.099 10 C 0.243 3.757 11 N -0.738 5.738 12 C 0.132 3.868 13 C -0.101 4.101 14 C -0.010 4.010 15 C -0.533 4.533 16 H 0.033 0.967 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.950 3.050 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.246 1.246 23 C -0.256 4.256 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.406 0.594 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.022 0.978 42 H 0.021 0.979 43 H 0.266 0.734 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.517 3.414 0.030 30.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.020 4.020 4 O -0.252 6.252 5 C 0.111 3.889 6 C -0.288 4.288 7 C -0.054 4.054 8 C -0.214 4.214 9 C -0.156 4.156 10 C 0.137 3.863 11 N -0.368 5.368 12 C 0.008 3.992 13 C -0.139 4.139 14 C -0.048 4.048 15 C -0.571 4.571 16 H 0.052 0.948 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.774 3.226 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.169 1.169 23 C -0.280 4.280 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.244 0.756 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -30.156 2.964 0.037 30.301 hybrid contribution 0.804 -0.427 -0.027 0.911 sum -29.351 2.537 0.009 29.461 Atomic orbital electron populations 1.21671 0.92533 1.03177 1.02808 1.21524 0.97384 0.94094 1.03180 1.23091 0.76955 0.99685 1.02306 1.86012 1.23093 1.27591 1.88526 1.18750 0.91398 0.84652 0.94136 1.21169 1.00487 0.91717 1.15443 1.20870 0.92869 0.97735 0.93930 1.19598 0.94150 0.94234 1.13398 1.20559 1.00034 0.92687 1.02294 1.17508 0.83750 0.92932 0.92083 1.44859 1.02127 1.08769 1.81024 1.21313 0.90142 0.86991 1.00778 1.21448 0.92192 0.98702 1.01542 1.19448 0.93334 0.95113 0.96861 1.21466 0.91574 0.93621 1.50437 0.94830 1.26027 0.94680 1.04550 0.94117 1.70065 1.01459 1.35029 1.52620 0.85652 0.79072 0.78660 0.79246 1.19142 1.20973 1.16950 1.19837 0.92536 0.96986 1.18643 0.91726 0.91719 0.91081 0.91463 0.91465 0.91076 0.91085 0.83900 0.83117 0.91348 0.89977 0.92585 0.75635 0.92568 0.92507 0.92386 0.92419 0.95931 0.96050 0.92472 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.74 6.30 30.60 0.19 -1.54 16 3 C 0.05 0.91 4.74 71.98 0.34 1.25 16 4 O -0.34 -8.64 10.13 -92.38 -0.94 -9.57 16 5 C 0.16 4.19 6.68 22.49 0.15 4.34 16 6 C -0.27 -5.76 9.04 22.39 0.20 -5.56 16 7 C -0.04 -0.72 9.69 22.24 0.22 -0.50 16 8 C -0.21 -4.88 5.90 -19.72 -0.12 -4.99 16 9 C -0.10 -1.79 9.56 71.23 0.68 -1.11 16 10 C 0.24 6.82 6.63 38.20 0.25 7.08 16 11 N -0.74 -20.94 5.63 -339.46 -1.91 -22.85 16 12 C 0.13 4.23 4.91 86.38 0.42 4.65 16 13 C -0.10 -3.83 5.27 30.60 0.16 -3.66 16 14 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 15 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 16 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 17 C 0.00 0.18 5.47 84.65 0.46 0.64 16 18 N -0.95 -60.14 13.96 21.44 0.30 -59.85 16 19 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 22 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 23 C -0.26 -7.67 9.25 22.49 0.21 -7.46 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 30 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 31 H 0.14 2.29 6.29 -2.91 -0.02 2.27 16 32 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.06 1.05 6.55 -2.39 -0.02 1.03 16 36 H 0.41 10.41 6.47 -92.71 -0.60 9.81 16 37 H 0.06 1.81 7.95 -2.39 -0.02 1.80 16 38 H 0.06 1.82 7.95 -2.39 -0.02 1.81 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 42 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 43 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.12 3.64 6.73 -2.91 -0.02 3.62 16 Total: -1.00 -68.38 354.59 3.90 -64.48 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.31 Total: 19.69 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 4.26 Total: -38.41 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.61 Total: -82.70 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.94 Total: -9.57 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -68.38 3.90 -64.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.312 kcal (2) G-P(sol) polarization free energy of solvation -68.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds