Wall clock time and date at job start Mon Mar 30 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 117.00224 * 2 1 4 4 C 1.38761 * 120.05129 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.93955 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.05600 * 359.74919 * 5 4 3 7 7 C 1.38242 * 120.11532 * 0.50518 * 6 5 4 8 8 C 1.50699 * 119.97553 * 179.76794 * 7 6 5 9 9 C 1.53000 * 109.47119 * 269.72258 * 8 7 6 10 10 N 1.46900 * 109.47136 * 179.97438 * 9 8 7 11 11 C 1.46910 * 111.00108 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.46699 * 325.00745 * 11 10 9 13 13 C 1.52997 * 109.46729 * 85.00300 * 11 10 9 14 14 C 1.52992 * 109.47127 * 205.00462 * 11 10 9 15 15 C 1.52997 * 109.47482 * 65.00091 * 14 11 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.38166 * 120.05556 * 359.49501 * 7 6 5 25 25 H 1.09003 * 109.47328 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46897 * 299.99819 * 1 2 3 27 27 H 1.09003 * 109.47410 * 59.99385 * 1 2 3 28 28 H 1.07994 * 120.03051 * 359.95456 * 4 3 2 29 29 H 1.07998 * 119.97296 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.94658 * 180.27320 * 6 5 4 31 31 H 1.08998 * 109.47375 * 149.72855 * 8 7 6 32 32 H 1.08996 * 109.47414 * 29.72440 * 8 7 6 33 33 H 1.09001 * 109.46950 * 60.00306 * 9 8 7 34 34 H 1.08996 * 109.47642 * 300.00258 * 9 8 7 35 35 H 1.00891 * 111.00565 * 303.95430 * 10 9 8 36 36 H 1.09007 * 109.46964 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47224 * 299.99989 * 13 11 10 38 38 H 1.09000 * 109.47346 * 59.99967 * 13 11 10 39 39 H 1.09002 * 109.47103 * 304.99844 * 14 11 10 40 40 H 1.08998 * 109.46862 * 185.00656 * 14 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 15 14 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 15 14 11 43 43 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.03646 * 180.23116 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0063 7 6 4.0560 2.5172 0.0005 8 6 5.5608 2.5982 0.0009 9 6 6.0705 2.6259 -1.4414 10 7 7.5373 2.7056 -1.4410 11 6 8.0634 2.7348 -2.8123 12 1 7.4407 2.1111 -3.4537 13 6 8.0510 4.1735 -3.3327 14 6 9.4975 2.2021 -2.8198 15 6 9.4953 0.7256 -2.4186 16 6 10.9080 0.2008 -2.4266 17 1 11.7256 0.8549 -2.6910 18 6 11.1567 -1.1143 -2.0954 19 7 10.1610 -1.9108 -1.7730 20 14 12.9077 -1.7647 -2.1047 21 1 13.5146 -1.5716 -0.7632 22 1 12.8967 -3.2115 -2.4394 23 1 13.7040 -1.0282 -3.1188 24 6 3.4312 1.2848 -0.0001 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2128 2.3204 0.0002 29 1 1.3341 4.5114 0.0019 30 1 3.7922 4.6380 0.0112 31 1 5.9714 1.7289 0.5146 32 1 5.8756 3.5063 0.5150 33 1 5.6600 3.4953 -1.9551 34 1 5.7557 1.7179 -1.9556 35 1 7.8559 3.5053 -0.9148 36 1 8.4409 4.1952 -4.3504 37 1 7.0292 4.5531 -3.3273 38 1 8.6736 4.7973 -2.6913 39 1 10.0999 2.7703 -2.1110 40 1 9.9186 2.3063 -3.8198 41 1 8.8930 0.1574 -3.1274 42 1 9.0743 0.6216 -1.4186 43 1 10.3360 -2.8361 -1.5404 44 1 4.0206 0.3799 -0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:47 Heat of formation + Delta-G solvation = -56.275599 kcal Electronic energy + Delta-G solvation = -20725.913389 eV Core-core repulsion = 17641.687849 eV Total energy + Delta-G solvation = -3084.225540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10126 -39.07069 -38.26475 -35.55451 -34.42595 -32.39075 -31.44220 -30.54733 -28.40908 -27.77866 -26.95406 -24.01631 -23.43325 -23.00076 -21.89277 -21.17620 -18.67686 -18.34000 -17.27159 -16.93427 -16.73759 -16.60545 -16.47771 -16.06447 -15.46522 -14.92734 -14.73156 -14.49087 -14.29698 -14.03294 -13.89136 -13.62781 -13.49767 -13.14221 -12.96856 -12.83594 -12.75174 -12.64506 -12.35583 -12.29564 -12.02126 -11.91900 -11.80162 -11.56487 -11.51444 -11.19859 -10.95132 -10.47892 -9.78176 -9.15579 -9.10436 -8.12627 -6.23525 0.34374 0.49089 1.39965 1.42236 1.52902 2.37532 2.44421 2.77001 3.19283 3.30429 3.87918 3.94153 4.03709 4.11115 4.23751 4.26419 4.30420 4.37909 4.43469 4.44106 4.50315 4.54823 4.60219 4.69343 4.71258 4.79882 4.96234 5.00554 5.06218 5.11303 5.13047 5.21329 5.30395 5.34847 5.48504 5.49199 5.60254 5.68946 5.86826 5.89628 6.04046 6.27714 6.35455 6.47339 6.69932 6.96731 7.44594 8.98709 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.003212 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.159041 B = 8715.092978 C = 9931.090642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.112 3.888 4 C -0.215 4.215 5 C -0.077 4.077 6 C -0.157 4.157 7 C -0.044 4.044 8 C -0.073 4.073 9 C 0.077 3.923 10 N -0.693 5.693 11 C 0.090 3.910 12 H 0.053 0.947 13 C -0.167 4.167 14 C -0.088 4.088 15 C 0.038 3.962 16 C -0.542 4.542 17 H 0.057 0.943 18 C -0.004 4.004 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.263 1.263 24 C -0.176 4.176 25 H 0.114 0.886 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.144 0.856 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.346 0.654 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.049 0.951 41 H -0.027 1.027 42 H 0.003 0.997 43 H 0.261 0.739 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.532 14.011 3.557 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.067 3.933 4 C -0.233 4.233 5 C -0.095 4.095 6 C -0.175 4.175 7 C -0.044 4.044 8 C -0.111 4.111 9 C -0.052 4.052 10 N -0.325 5.325 11 C -0.020 4.020 12 H 0.072 0.928 13 C -0.226 4.226 14 C -0.126 4.126 15 C 0.001 3.999 16 C -0.580 4.580 17 H 0.075 0.925 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.187 1.187 24 C -0.195 4.195 25 H 0.132 0.868 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.168 0.832 29 H 0.174 0.826 30 H 0.162 0.838 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.165 0.835 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.068 0.932 41 H -0.009 1.009 42 H 0.022 0.978 43 H 0.069 0.931 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.408 12.961 3.670 24.453 hybrid contribution 0.414 -0.190 -0.261 0.526 sum -19.994 12.771 3.408 23.968 Atomic orbital electron populations 1.23336 0.76357 1.05426 1.02386 1.86067 1.23670 1.27365 1.88791 1.19208 0.92185 0.85109 0.96790 1.21506 1.01068 0.91865 1.08898 1.21304 0.94475 0.97833 0.95897 1.21240 0.94269 0.98101 1.03930 1.19698 0.95572 0.92400 0.96768 1.20518 0.90013 1.03748 0.96785 1.21776 0.87352 0.99962 0.96068 1.60360 1.08824 1.48997 1.14326 1.21504 0.95737 0.95896 0.88861 0.92825 1.22376 1.02083 0.95970 1.02176 1.21460 0.95017 0.96628 0.99511 1.18828 0.94206 0.91842 0.95053 1.21821 0.94774 0.96044 1.45380 0.92511 1.25998 1.01514 0.97529 0.95070 1.70137 1.33194 1.06279 1.47842 0.85484 0.79626 0.77344 0.78786 1.19788 1.20861 1.18718 1.20474 0.92221 0.98573 1.08236 0.86785 0.91360 0.91558 0.83174 0.82633 0.83826 0.91907 0.88811 0.93806 0.93708 0.83487 0.91777 0.91893 0.91579 0.93101 0.93235 1.00897 0.97820 0.93080 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.50 10.50 -92.47 -0.97 -9.47 16 3 C 0.11 2.82 6.69 22.51 0.15 2.97 16 4 C -0.21 -4.04 9.04 22.37 0.20 -3.84 16 5 C -0.08 -1.30 10.04 22.25 0.22 -1.07 16 6 C -0.16 -3.05 9.70 22.28 0.22 -2.84 16 7 C -0.04 -1.08 5.13 -19.88 -0.10 -1.19 16 8 C -0.07 -1.88 5.60 29.85 0.17 -1.71 16 9 C 0.08 2.23 5.47 86.30 0.47 2.70 16 10 N -0.69 -22.81 5.70 -491.57 -2.80 -25.61 16 11 C 0.09 3.09 2.59 44.91 0.12 3.21 16 12 H 0.05 2.01 7.80 -2.39 -0.02 2.00 16 13 C -0.17 -4.22 9.16 71.98 0.66 -3.57 16 14 C -0.09 -3.76 4.83 30.59 0.15 -3.62 16 15 C 0.04 2.12 4.86 29.85 0.15 2.27 16 16 C -0.54 -32.50 9.11 25.60 0.23 -32.27 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 19 N -0.93 -59.92 13.29 21.45 0.28 -59.63 16 20 Si 0.96 46.23 29.54 68.60 2.03 48.26 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 24 C -0.18 -5.00 9.64 22.37 0.22 -4.79 16 25 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 27 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 28 H 0.15 1.93 6.30 -2.91 -0.02 1.91 16 29 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 30 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 31 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 32 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 33 H 0.04 1.08 7.43 -2.39 -0.02 1.06 16 34 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 35 H 0.35 9.70 8.47 -89.70 -0.76 8.95 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.06 1.38 7.45 -2.38 -0.02 1.36 16 38 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 42 H 0.00 0.21 7.75 -2.39 -0.02 0.19 16 43 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.11 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -73.45 361.29 3.15 -70.29 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.20 Total: 18.31 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 4.42 Total: -42.14 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.52 Total: -85.24 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.97 Total: -9.47 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -73.45 3.15 -70.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.018 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds