Wall clock time and date at job start Mon Mar 30 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 116.99890 * 2 1 4 4 C 1.38758 * 120.05752 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94331 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.06010 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10567 * 359.95703 * 6 5 4 8 8 C 1.50706 * 119.96729 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.46891 * 159.99781 * 8 7 6 10 10 C 1.53009 * 109.46590 * 279.99542 * 8 7 6 11 11 N 1.46893 * 109.47503 * 39.99342 * 8 7 6 12 12 C 1.46901 * 110.99761 * 86.65470 * 11 8 7 13 13 H 1.08999 * 109.47044 * 323.85146 * 12 11 8 14 14 C 1.52992 * 109.47089 * 83.85523 * 12 11 8 15 15 C 1.53001 * 109.47231 * 203.85593 * 12 11 8 16 16 C 1.53001 * 109.47123 * 64.99896 * 15 12 11 17 17 C 1.50702 * 109.47079 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00069 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99610 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00447 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99533 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47255 * 60.00063 * 21 19 17 23 23 H 1.48503 * 109.46943 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46991 * 299.99858 * 21 19 17 25 25 C 1.38160 * 120.05735 * 0.27489 * 7 6 5 26 26 H 1.08998 * 109.47404 * 60.00063 * 1 2 3 27 27 H 1.08997 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.47322 * 300.00348 * 1 2 3 29 29 H 1.07995 * 120.02822 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.96986 * 179.97438 * 5 4 3 31 31 H 1.07995 * 119.94534 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.46740 * 295.53830 * 10 8 7 33 33 H 1.08998 * 109.47054 * 55.54074 * 10 8 7 34 34 H 1.08995 * 109.46458 * 175.53709 * 10 8 7 35 35 H 1.00897 * 111.00499 * 210.61331 * 11 8 7 36 36 H 1.09001 * 109.47454 * 55.18417 * 14 12 11 37 37 H 1.09006 * 109.46923 * 175.18158 * 14 12 11 38 38 H 1.08997 * 109.47234 * 295.18500 * 14 12 11 39 39 H 1.09000 * 109.47674 * 184.99869 * 15 12 11 40 40 H 1.08999 * 109.47262 * 304.99874 * 15 12 11 41 41 H 1.08996 * 109.47494 * 300.00251 * 16 15 12 42 42 H 1.08999 * 109.47105 * 60.00417 * 16 15 12 43 43 H 0.97001 * 119.99995 * 179.97438 * 20 19 17 44 44 H 1.08004 * 120.02576 * 179.74442 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6759 -0.0016 7 6 4.0559 2.5171 -0.0007 8 6 5.5608 2.5982 -0.0007 9 1 5.9755 1.6538 0.3515 10 6 6.0565 2.8747 -1.4216 11 7 5.9927 3.6847 0.8886 12 6 6.1183 3.2125 2.2739 13 1 5.3360 2.4824 2.4813 14 6 7.4888 2.5609 2.4683 15 6 5.9766 4.3974 3.2315 16 6 4.5624 4.9719 3.1263 17 6 4.4231 6.1394 4.0690 18 1 5.2596 6.4417 4.6815 19 6 3.2275 6.8215 4.1494 20 7 2.2087 6.4531 3.4039 21 14 3.0550 8.2692 5.3174 22 1 4.0426 9.3175 4.9557 23 1 1.6824 8.8266 5.2154 24 1 3.3030 7.8145 6.7092 25 6 3.4310 1.2849 -0.0050 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2128 2.3204 -0.0014 30 1 1.3339 4.5114 -0.0019 31 1 3.7921 4.6381 -0.0024 32 1 5.8049 2.0313 -2.0646 33 1 5.5801 3.7776 -1.8034 34 1 7.1377 3.0120 -1.4088 35 1 6.8567 4.0940 0.5662 36 1 8.2698 3.2640 2.1790 37 1 7.6158 2.2876 3.5158 38 1 7.5571 1.6668 1.8486 39 1 6.1578 4.0630 4.2529 40 1 6.7019 5.1670 2.9671 41 1 4.3811 5.3064 2.1049 42 1 3.8371 4.2024 3.3907 43 1 1.3675 6.9328 3.4608 44 1 4.0206 0.3800 -0.0085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:38 Heat of formation + Delta-G solvation = -29.995141 kcal Electronic energy + Delta-G solvation = -22064.336231 eV Core-core repulsion = 18981.250297 eV Total energy + Delta-G solvation = -3083.085934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.86684 -38.18403 -36.44628 -33.84651 -32.46938 -30.46639 -29.70564 -28.79906 -27.70237 -27.07330 -24.96437 -23.10833 -22.11291 -21.36713 -20.01365 -19.66939 -17.38960 -16.12963 -16.03813 -15.58131 -15.54694 -14.95023 -14.67561 -14.59016 -14.23375 -13.35397 -13.17038 -12.93452 -12.83811 -12.56826 -12.41205 -12.29738 -12.18016 -11.68914 -11.66589 -11.31302 -11.22579 -11.03898 -10.90868 -10.79176 -10.60964 -10.45187 -10.37931 -10.09759 -9.55501 -9.14586 -8.84773 -8.39946 -8.17932 -7.87167 -7.71106 -5.83644 -3.84091 1.75370 1.96999 3.40451 3.44443 3.46403 3.47311 4.21686 4.54786 4.57424 5.01157 5.10329 5.21085 5.28051 5.34550 5.42340 5.43357 5.49206 5.51431 5.53254 5.62294 5.69606 5.81283 5.83189 5.94874 6.00735 6.12157 6.19684 6.26812 6.33292 6.43983 6.49864 6.70949 6.73981 6.95121 7.04144 7.16248 7.20813 7.38902 7.59766 7.72815 7.88507 7.91315 8.15691 8.30207 8.63485 9.24485 9.77646 11.26664 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.005790 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.488810 B = 4834.603647 C = 6286.797368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.325 6.325 3 C 0.111 3.889 4 C -0.210 4.210 5 C -0.072 4.072 6 C -0.099 4.099 7 C -0.039 4.039 8 C 0.124 3.876 9 H 0.048 0.952 10 C -0.148 4.148 11 N -0.665 5.665 12 C 0.085 3.915 13 H 0.072 0.928 14 C -0.180 4.180 15 C -0.099 4.099 16 C 0.034 3.966 17 C -0.518 4.518 18 H 0.048 0.952 19 C 0.058 3.942 20 N -0.891 5.891 21 Si 0.884 3.116 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.280 1.280 25 C -0.156 4.156 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.337 0.663 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.035 0.965 42 H 0.005 0.995 43 H 0.256 0.744 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 -11.267 -10.251 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.067 3.933 4 C -0.228 4.228 5 C -0.091 4.091 6 C -0.117 4.117 7 C -0.039 4.039 8 C 0.014 3.986 9 H 0.066 0.934 10 C -0.205 4.205 11 N -0.296 5.296 12 C -0.025 4.025 13 H 0.090 0.910 14 C -0.239 4.239 15 C -0.137 4.137 16 C -0.003 4.003 17 C -0.557 4.557 18 H 0.066 0.934 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.712 3.288 22 H -0.205 1.205 23 H -0.215 1.215 24 H -0.205 1.205 25 C -0.175 4.175 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.153 0.847 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.024 0.976 43 H 0.066 0.934 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.602 -11.163 -10.205 15.209 hybrid contribution 0.253 0.436 0.843 0.982 sum 1.855 -10.726 -9.362 14.358 Atomic orbital electron populations 1.22963 0.79014 1.03217 1.01337 1.85999 1.20906 1.27535 1.89436 1.18844 0.92142 0.83780 0.98538 1.21153 0.99466 0.92616 1.09611 1.21021 0.95155 0.96738 0.96137 1.20989 0.92888 0.98962 0.98853 1.19550 0.94880 0.92008 0.97506 1.20338 0.91268 0.93924 0.93059 0.93417 1.21953 1.00467 1.02618 0.95510 1.60469 1.37146 1.30479 1.01485 1.21746 0.94573 0.97559 0.88579 0.91009 1.22543 0.99252 1.00235 1.01868 1.21628 1.01742 0.94886 0.95407 1.18971 0.89165 0.94476 0.97733 1.21329 0.97116 1.14477 1.22764 0.93357 1.24960 0.96158 0.97225 0.95874 1.69971 1.02455 1.40722 1.39925 0.86804 0.76880 0.83371 0.81732 1.20454 1.21484 1.20536 1.20102 0.91161 0.97762 1.08485 0.92983 0.88816 0.92709 0.86285 0.85796 0.84682 0.92185 0.91427 0.92594 0.84346 0.92870 0.92306 0.93780 0.93741 0.93580 0.94712 0.97622 0.93387 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.80 10.50 -19.43 -0.20 -5.01 16 3 C 0.11 1.81 6.69 -39.21 -0.26 1.55 16 4 C -0.21 -3.41 9.04 -39.43 -0.36 -3.77 16 5 C -0.07 -1.29 10.04 -39.60 -0.40 -1.69 16 6 C -0.10 -1.79 9.23 -39.56 -0.37 -2.16 16 7 C -0.04 -0.63 4.69 -104.64 -0.49 -1.12 16 8 C 0.12 1.75 2.63 -68.86 -0.18 1.57 16 9 H 0.05 0.65 6.93 -51.93 -0.36 0.29 16 10 C -0.15 -1.70 9.19 37.16 0.34 -1.35 16 11 N -0.66 -10.45 4.75 -100.95 -0.48 -10.92 16 12 C 0.08 1.45 2.40 -67.72 -0.16 1.29 16 13 H 0.07 1.36 7.71 -51.93 -0.40 0.96 16 14 C -0.18 -2.47 9.16 37.15 0.34 -2.13 16 15 C -0.10 -2.06 4.83 -26.73 -0.13 -2.19 16 16 C 0.03 0.88 4.86 -27.88 -0.14 0.74 16 17 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 18 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 21 Si 0.88 22.08 29.54 -169.99 -5.02 17.06 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.16 -2.51 9.61 -39.43 -0.38 -2.89 16 26 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.58 7.66 -51.92 -0.40 0.19 16 29 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 30 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.14 2.64 7.30 -52.49 -0.38 2.25 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 35 H 0.34 4.71 7.97 -39.29 -0.31 4.40 16 36 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.55 7.43 -51.93 -0.39 0.16 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.03 0.95 7.25 -51.93 -0.38 0.58 16 42 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.12 1.71 8.04 -52.48 -0.42 1.29 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -31.35 357.56 -8.70 -40.05 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.53 Total: 4.03 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -1.60 Total: -24.52 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.26 Total: -37.02 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.20 Total: -5.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.35 -8.70 -40.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.059 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds