Wall clock time and date at job start Mon Mar 30 2020 02:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 120.00161 * 2 1 3 5 5 C 1.53004 * 109.47119 * 184.99993 * 4 2 1 6 6 C 1.50696 * 109.47273 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00168 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00287 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00015 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00272 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47152 * 89.99642 * 10 8 6 12 12 H 1.48503 * 109.47093 * 209.99825 * 10 8 6 13 13 H 1.48496 * 109.47286 * 329.99786 * 10 8 6 14 14 N 1.46906 * 109.47113 * 240.00179 * 2 1 3 15 15 C 1.46901 * 110.99793 * 84.99675 * 14 2 1 16 16 C 1.53000 * 109.46769 * 179.97438 * 15 14 2 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 14 18 18 H 1.09008 * 109.47017 * 55.00082 * 17 16 15 19 19 O 1.42903 * 109.47386 * 295.00486 * 17 16 15 20 20 C 1.50698 * 109.47721 * 175.00208 * 17 16 15 21 21 C 1.38238 * 119.99906 * 84.72295 * 20 17 16 22 22 C 1.38236 * 119.99890 * 179.81899 * 21 20 17 23 23 C 1.38232 * 119.99863 * 0.39542 * 22 21 20 24 24 C 1.38239 * 120.00162 * 359.85613 * 23 22 21 25 25 C 1.38229 * 119.99780 * 359.96141 * 24 23 22 26 26 H 1.08996 * 109.47268 * 299.99420 * 1 2 3 27 27 H 1.08995 * 109.47731 * 59.99865 * 1 2 3 28 28 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47022 * 304.99740 * 4 2 1 30 30 H 1.08999 * 109.47177 * 65.00633 * 4 2 1 31 31 H 1.09004 * 109.46918 * 300.00076 * 5 4 2 32 32 H 1.08999 * 109.47179 * 59.99812 * 5 4 2 33 33 H 0.96990 * 119.99977 * 180.02562 * 9 8 6 34 34 H 1.00898 * 110.99995 * 321.04597 * 14 2 1 35 35 H 1.09001 * 109.46874 * 60.00179 * 15 14 2 36 36 H 1.08992 * 109.47407 * 300.00197 * 15 14 2 37 37 H 1.09002 * 109.47398 * 300.00295 * 16 15 14 38 38 H 1.09001 * 109.47194 * 60.00475 * 16 15 14 39 39 H 0.96705 * 113.99520 * 300.00083 * 19 17 16 40 40 H 1.07999 * 120.00055 * 0.02562 * 21 20 17 41 41 H 1.07999 * 120.00040 * 180.23025 * 22 21 20 42 42 H 1.08000 * 120.00058 * 179.83974 * 23 22 21 43 43 H 1.08004 * 120.00101 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00189 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0673 -1.3243 2.5437 7 1 3.3688 -1.8047 3.2129 8 6 5.4185 -1.3605 2.8155 9 7 6.2690 -0.7750 2.0009 10 14 6.0412 -2.2412 4.3406 11 1 6.3217 -3.6620 4.0119 12 1 7.2873 -1.5876 4.8154 13 1 5.0098 -2.1741 5.4068 14 7 2.0196 -0.6925 -1.1995 15 6 2.0823 0.2227 -2.3469 16 6 2.5961 -0.5328 -3.5742 17 6 2.6620 0.4204 -4.7691 18 1 3.2673 1.2887 -4.5083 19 8 1.3418 0.8461 -5.1124 20 6 3.2825 -0.2896 -5.9447 21 6 2.4982 -1.0704 -6.7730 22 6 3.0666 -1.7187 -7.8535 23 6 4.4208 -1.5928 -8.1009 24 6 5.2060 -0.8161 -7.2695 25 6 4.6369 -0.1648 -6.1913 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 3.9994 -1.0728 0.4259 32 1 3.8532 0.4369 1.3573 33 1 7.2196 -0.8009 2.1918 34 1 1.4495 -1.4979 -1.4101 35 1 2.7587 1.0463 -2.1182 36 1 1.0870 0.6164 -2.5525 37 1 3.5916 -0.9262 -3.3683 38 1 1.9201 -1.3566 -3.8031 39 1 0.7466 0.1238 -5.3560 40 1 1.4408 -1.1713 -6.5779 41 1 2.4532 -2.3258 -8.5028 42 1 4.8654 -2.1014 -8.9436 43 1 6.2641 -0.7180 -7.4626 44 1 5.2504 0.4417 -5.5415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:35 Heat of formation + Delta-G solvation = -72.000836 kcal Electronic energy + Delta-G solvation = -20875.157802 eV Core-core repulsion = 17790.250364 eV Total energy + Delta-G solvation = -3084.907438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63281 -38.82624 -37.81349 -35.40737 -33.98493 -32.58800 -31.74447 -31.19873 -29.39789 -27.01489 -25.76711 -23.53563 -23.27907 -22.71368 -21.97827 -21.23189 -18.53645 -18.34921 -17.01956 -16.90190 -16.69969 -16.49495 -15.98403 -15.76992 -15.36725 -14.83381 -14.77033 -14.42208 -14.23879 -14.07794 -13.89169 -13.63647 -13.51559 -13.14684 -13.02769 -12.84038 -12.63036 -12.49405 -12.30931 -12.05632 -12.00785 -11.82885 -11.75408 -11.53121 -11.21472 -11.06859 -10.88981 -10.48284 -9.83508 -9.64900 -9.09959 -8.13390 -6.24080 0.39703 0.48675 1.39782 1.41798 1.52531 2.43944 2.81177 3.18522 3.23908 3.51074 3.70649 3.91253 4.04431 4.11545 4.14038 4.22159 4.26841 4.30906 4.45523 4.49436 4.50982 4.64393 4.68730 4.78449 4.81121 4.96805 5.02441 5.06239 5.08472 5.12218 5.19703 5.23586 5.29295 5.47956 5.54634 5.59516 5.61095 5.65418 5.89048 6.03104 6.09555 6.28775 6.34976 6.67607 6.75484 6.95825 7.43992 8.97963 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.003347 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.035495 B = 8363.177225 C = 9652.763490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.055 0.945 4 C -0.088 4.088 5 C 0.039 3.961 6 C -0.543 4.543 7 H 0.056 0.944 8 C -0.003 4.003 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.693 5.693 15 C 0.071 3.929 16 C -0.130 4.130 17 C 0.158 3.842 18 H 0.098 0.902 19 O -0.563 6.563 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.131 4.131 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.003 0.997 32 H -0.026 1.026 33 H 0.261 0.739 34 H 0.343 0.657 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.386 0.614 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 -0.745 -20.514 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 H 0.073 0.927 4 C -0.126 4.126 5 C 0.002 3.998 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.325 5.325 15 C -0.058 4.058 16 C -0.168 4.168 17 C 0.099 3.901 18 H 0.115 0.885 19 O -0.371 6.371 20 C -0.125 4.125 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.149 4.149 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.022 0.978 32 H -0.008 1.008 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.145 -0.042 -20.235 22.206 hybrid contribution -0.137 -0.648 0.577 0.879 sum -9.282 -0.690 -19.658 21.750 Atomic orbital electron populations 1.22370 0.95318 1.02522 1.02393 1.21503 0.93404 0.96757 0.90338 0.92665 1.21464 0.96499 0.99124 0.95546 1.18819 0.92258 0.93695 0.95060 1.21819 0.92536 1.34318 1.09430 0.92619 1.25980 0.97414 0.96526 1.00085 1.70128 1.02541 1.45608 1.39102 0.85493 0.77788 0.78604 0.79412 1.19807 1.20789 1.18800 1.60399 1.58373 1.10026 1.03665 1.21804 0.99492 0.94884 0.89600 1.22118 1.02580 0.98483 0.93658 1.20635 0.83663 0.96196 0.89653 0.88456 1.86602 1.21771 1.38701 1.90008 1.20639 0.94812 0.99198 0.97892 1.21158 1.00633 0.96781 0.95298 1.21469 0.95589 0.99527 0.97658 1.21519 0.94397 0.98764 1.00083 1.21432 1.00948 0.97317 0.95041 1.21243 0.94786 1.00564 0.98354 0.91790 0.91971 0.91766 0.93285 0.93292 0.97821 1.00751 0.93046 0.83846 0.93346 0.93778 0.91924 0.90185 0.76441 0.84161 0.83667 0.83975 0.84598 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 9.16 71.98 0.66 -3.62 16 2 C 0.09 3.08 2.59 44.91 0.12 3.19 16 3 H 0.05 2.05 7.80 -2.39 -0.02 2.03 16 4 C -0.09 -3.76 4.83 30.60 0.15 -3.61 16 5 C 0.04 2.15 4.86 29.85 0.15 2.30 16 6 C -0.54 -32.33 9.11 25.60 0.23 -32.10 16 7 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 8 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 9 N -0.93 -59.10 13.29 21.45 0.28 -58.82 16 10 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 14 N -0.69 -22.58 5.70 -491.57 -2.80 -25.38 16 15 C 0.07 1.98 5.38 86.30 0.46 2.45 16 16 C -0.13 -3.10 5.14 30.59 0.16 -2.94 16 17 C 0.16 3.41 3.21 29.85 0.10 3.50 16 18 H 0.10 2.29 8.05 -2.38 -0.02 2.27 16 19 O -0.56 -11.23 12.68 -148.98 -1.89 -13.11 16 20 C -0.13 -2.62 5.00 -19.87 -0.10 -2.71 16 21 C -0.12 -2.08 9.33 22.27 0.21 -1.87 16 22 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 23 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 24 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 25 C -0.13 -2.85 9.68 22.27 0.22 -2.64 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.40 7.45 -2.39 -0.02 1.38 16 28 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.00 0.20 7.75 -2.39 -0.02 0.19 16 32 H -0.03 -1.58 8.14 -2.39 -0.02 -1.60 16 33 H 0.26 15.49 8.31 -92.72 -0.77 14.72 16 34 H 0.34 9.72 8.47 -89.70 -0.76 8.96 16 35 H 0.05 1.55 8.06 -2.39 -0.02 1.53 16 36 H 0.04 1.10 7.12 -2.39 -0.02 1.09 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.39 4.80 7.40 -74.05 -0.55 4.25 16 40 H 0.14 1.66 6.62 -2.91 -0.02 1.64 16 41 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 44 H 0.12 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -71.60 360.39 0.76 -70.84 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.34 Total: 22.24 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 3.48 Total: -43.61 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -2.52 Total: -84.20 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.89 Total: -13.11 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.60 0.76 -70.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.159 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds