Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47135 * 2 1 4 4 C 1.52992 * 109.47634 * 120.00704 * 2 1 3 5 5 C 1.52996 * 109.47163 * 185.00053 * 4 2 1 6 6 C 1.50700 * 109.47098 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00384 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99911 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99947 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99850 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46682 * 90.00459 * 10 8 6 12 12 H 1.48494 * 109.46900 * 210.00258 * 10 8 6 13 13 H 1.48496 * 109.46989 * 330.00463 * 10 8 6 14 14 N 1.46905 * 109.46403 * 240.00598 * 2 1 3 15 15 C 1.46905 * 110.99764 * 97.62513 * 14 2 1 16 16 C 1.52994 * 109.47379 * 302.87239 * 15 14 2 17 17 C 1.53000 * 109.47135 * 62.87364 * 15 14 2 18 18 O 1.42900 * 109.46919 * 57.18904 * 17 15 14 19 19 C 1.50699 * 109.46792 * 182.87278 * 15 14 2 20 20 C 1.38234 * 120.00085 * 359.72781 * 19 15 14 21 21 C 1.38238 * 119.99864 * 179.76593 * 20 19 15 22 22 C 1.38235 * 120.00100 * 0.50437 * 21 20 19 23 23 C 1.38239 * 119.99707 * 359.74659 * 22 21 20 24 24 C 1.38231 * 120.00043 * 0.02562 * 23 22 21 25 25 H 1.08993 * 109.47876 * 53.48963 * 1 2 3 26 26 H 1.08999 * 109.47232 * 173.49847 * 1 2 3 27 27 H 1.09004 * 109.46855 * 293.48721 * 1 2 3 28 28 H 1.09007 * 109.47256 * 304.99757 * 4 2 1 29 29 H 1.08997 * 109.47403 * 64.99658 * 4 2 1 30 30 H 1.09007 * 109.47048 * 299.99247 * 5 4 2 31 31 H 1.08997 * 109.47283 * 59.99532 * 5 4 2 32 32 H 0.96997 * 119.99805 * 180.02562 * 9 8 6 33 33 H 1.00896 * 110.99477 * 221.56971 * 14 2 1 34 34 H 1.08992 * 109.47432 * 174.28246 * 16 15 14 35 35 H 1.09003 * 109.47316 * 294.28631 * 16 15 14 36 36 H 1.09004 * 109.46836 * 54.28376 * 16 15 14 37 37 H 1.09002 * 109.46895 * 177.18303 * 17 15 14 38 38 H 1.08992 * 109.47365 * 297.18936 * 17 15 14 39 39 H 0.96708 * 113.99521 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.00148 * 359.97438 * 20 19 15 41 41 H 1.07997 * 120.00076 * 180.22994 * 21 20 19 42 42 H 1.08001 * 120.00505 * 179.72988 * 22 21 20 43 43 H 1.08004 * 120.00025 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.99832 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2490 5 6 3.5649 -0.6133 1.3134 6 6 4.0673 -1.3233 2.5441 7 1 3.3690 -1.8039 3.2132 8 6 5.4187 -1.3602 2.8153 9 7 6.2691 -0.7754 2.0003 10 14 6.0414 -2.2397 4.3412 11 1 6.3208 -3.6610 4.0138 12 1 7.2879 -1.5865 4.8149 13 1 5.0103 -2.1708 5.4076 14 7 2.0195 -0.6924 -1.1996 15 6 2.3665 0.2671 -2.2565 16 6 1.1464 1.1310 -2.5817 17 6 3.5116 1.1616 -1.7774 18 8 4.6292 0.3496 -1.4116 19 6 2.7964 -0.4806 -3.4923 20 6 2.8198 -1.8627 -3.4908 21 6 3.2096 -2.5487 -4.6259 22 6 3.5859 -1.8523 -5.7592 23 6 3.5675 -0.4700 -5.7590 24 6 3.1732 0.2158 -4.6254 25 1 -0.3634 0.6114 -0.8259 26 1 -0.3633 -1.0210 -0.1164 27 1 -0.3633 0.4096 0.9426 28 1 1.6056 -0.2619 2.1369 29 1 1.7518 -1.7716 1.2054 30 1 3.9995 -1.0728 0.4256 31 1 3.8532 0.4369 1.3571 32 1 7.2198 -0.8017 2.1909 33 1 2.8044 -1.2867 -0.9789 34 1 1.4302 1.9081 -3.2913 35 1 0.3659 0.5078 -3.0183 36 1 0.7738 1.5925 -1.6672 37 1 3.8026 1.8401 -2.5793 38 1 3.1841 1.7395 -0.9133 39 1 5.3940 0.8515 -1.0978 40 1 2.5304 -2.4068 -2.6038 41 1 3.2243 -3.6285 -4.6260 42 1 3.8946 -2.3880 -6.6447 43 1 3.8619 0.0741 -6.6443 44 1 3.1592 1.2957 -4.6251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -31.179550 kcal Electronic energy + Delta-G solvation = -22682.725137 eV Core-core repulsion = 19599.587843 eV Total energy + Delta-G solvation = -3083.137294 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.88287 -37.75390 -35.52502 -33.93942 -32.51388 -30.79836 -29.93215 -28.87002 -28.59283 -25.68466 -24.86394 -22.98609 -22.14180 -21.28038 -19.82721 -18.86954 -16.97747 -16.75426 -16.21500 -15.73750 -14.97146 -14.77897 -14.47672 -14.18869 -14.10132 -13.76538 -13.18065 -12.84788 -12.61220 -12.46127 -12.29650 -12.00007 -11.91017 -11.74086 -11.71366 -11.41889 -11.06760 -11.03283 -10.88025 -10.71455 -10.45557 -10.33332 -10.08722 -9.78019 -9.37692 -9.14978 -8.92604 -8.65972 -8.45539 -8.26755 -7.86853 -5.93689 -3.94331 1.60953 1.67665 3.34516 3.40834 3.44134 4.04019 4.37026 4.50651 4.81221 4.85397 5.13689 5.18187 5.34406 5.37254 5.42013 5.50890 5.62256 5.65834 5.68600 5.74110 5.80628 5.83006 5.91094 5.98412 6.11198 6.19737 6.24260 6.28866 6.31637 6.46613 6.58241 6.62307 6.69155 6.77354 6.92217 6.97711 7.20128 7.25378 7.62882 7.76548 7.94360 7.99924 8.13649 8.22074 8.51561 9.12951 9.68526 11.16805 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.005239 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.497051 B = 5343.302630 C = 6055.447373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 H 0.046 0.954 4 C -0.121 4.121 5 C 0.024 3.976 6 C -0.520 4.520 7 H 0.051 0.949 8 C 0.059 3.941 9 N -0.890 5.890 10 Si 0.886 3.114 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.670 5.670 15 C 0.155 3.845 16 C -0.138 4.138 17 C 0.052 3.948 18 O -0.548 6.548 19 C -0.049 4.049 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.119 4.119 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.007 0.993 32 H 0.257 0.743 33 H 0.362 0.638 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.383 0.617 40 H 0.133 0.867 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 3.754 -13.676 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 H 0.064 0.936 4 C -0.159 4.159 5 C -0.013 4.013 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.142 4.142 9 N -0.530 5.530 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.305 5.305 15 C 0.063 3.937 16 C -0.196 4.196 17 C -0.028 4.028 18 O -0.353 6.353 19 C -0.049 4.049 20 C -0.111 4.111 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.138 4.138 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.186 0.814 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.230 0.770 40 H 0.151 0.849 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.578 3.174 -14.104 16.810 hybrid contribution 1.772 0.423 1.394 2.294 sum -6.806 3.597 -12.709 14.859 Atomic orbital electron populations 1.22035 0.96018 1.01811 1.00230 1.21629 0.94172 0.96885 0.90281 0.93586 1.21948 1.00364 0.99145 0.94451 1.19130 0.88172 0.96659 0.97299 1.21284 0.91878 1.34210 1.08448 0.93094 1.24965 0.97098 0.95675 0.96445 1.69957 1.02060 1.44138 1.36800 0.86692 0.78236 0.79888 0.83736 1.20769 1.21395 1.20062 1.60889 1.40556 1.20574 1.08514 1.19760 0.92276 0.91330 0.90351 1.21998 0.96999 0.98768 1.01799 1.22818 0.88707 0.93331 0.97944 1.86519 1.25135 1.36356 1.87260 1.19620 0.97537 0.93887 0.93850 1.21129 0.97717 0.93980 0.98269 1.21156 0.99775 0.99711 0.93472 1.21046 1.01263 0.94355 0.98268 1.20973 1.01054 0.94426 0.97953 1.20863 1.00435 0.99339 0.93138 0.93085 0.92494 0.93383 0.93156 0.92869 0.94850 0.97440 0.93332 0.81448 0.92715 0.91393 0.91291 0.94664 0.93456 0.76975 0.84919 0.86459 0.86785 0.86723 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.09 37.16 0.34 -1.74 16 2 C 0.08 1.36 1.84 -67.71 -0.12 1.23 16 3 H 0.05 0.81 5.15 -51.93 -0.27 0.54 16 4 C -0.12 -2.50 4.64 -26.74 -0.12 -2.63 16 5 C 0.02 0.61 4.49 -27.88 -0.13 0.49 16 6 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 10 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 N -0.67 -11.22 4.87 -94.21 -0.46 -11.68 16 15 C 0.15 2.31 0.59 -132.75 -0.08 2.23 16 16 C -0.14 -1.73 7.14 37.15 0.27 -1.47 16 17 C 0.05 0.81 5.54 37.16 0.21 1.02 16 18 O -0.55 -10.15 11.14 -35.23 -0.39 -10.54 16 19 C -0.05 -0.73 4.49 -104.62 -0.47 -1.20 16 20 C -0.09 -1.43 9.17 -39.58 -0.36 -1.80 16 21 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 22 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 24 C -0.12 -1.60 8.74 -39.58 -0.35 -1.94 16 25 H 0.05 0.66 5.56 -51.93 -0.29 0.37 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.88 5.35 -51.93 -0.28 0.61 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.36 7.07 4.87 -39.29 -0.19 6.88 16 34 H 0.05 0.59 7.60 -51.93 -0.39 0.20 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.86 5.07 -51.93 -0.26 0.59 16 37 H 0.04 0.48 7.29 -51.93 -0.38 0.10 16 38 H 0.05 0.77 6.25 -51.93 -0.32 0.44 16 39 H 0.38 6.50 9.12 45.56 0.42 6.91 16 40 H 0.13 2.14 6.46 -52.49 -0.34 1.80 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.11 1.14 8.06 -52.48 -0.42 0.71 16 44 H 0.11 1.33 7.16 -52.48 -0.38 0.95 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -30.04 339.54 -8.48 -38.51 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.03 Total: 12.46 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -2.43 Total: -25.29 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.28 Total: -37.03 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.39 Total: -10.54 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.04 -8.48 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.333 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds