Wall clock time and date at job start Mon Mar 30 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47319 * 2 1 4 4 O 1.42901 * 109.47274 * 180.02562 * 3 2 1 5 5 C 1.35896 * 117.00083 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.05426 * 0.29963 * 5 4 3 7 7 C 1.38119 * 119.94413 * 180.21111 * 6 5 4 8 8 C 1.38288 * 120.05366 * 359.50981 * 7 6 5 9 9 C 1.50704 * 119.94343 * 180.25711 * 8 7 6 10 10 N 1.46900 * 109.47317 * 260.00087 * 9 8 7 11 11 C 1.46895 * 111.00159 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47497 * 325.00181 * 11 10 9 13 13 C 1.53007 * 109.46903 * 85.00261 * 11 10 9 14 14 C 1.50702 * 109.47168 * 204.99911 * 11 10 9 15 15 H 1.08000 * 120.00279 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99820 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99847 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 120.00257 * 0.02562 * 16 14 11 19 19 H 1.48501 * 109.47161 * 89.99303 * 18 16 14 20 20 H 1.48500 * 109.47196 * 209.99871 * 18 16 14 21 21 H 1.48499 * 109.46785 * 329.99504 * 18 16 14 22 22 C 1.38240 * 120.11591 * 0.24016 * 8 7 6 23 23 C 1.50696 * 119.97662 * 180.02562 * 22 8 7 24 24 C 1.38171 * 120.05202 * 359.97438 * 22 8 7 25 25 H 1.09000 * 109.46526 * 299.99794 * 1 2 3 26 26 H 1.08992 * 109.47317 * 59.99503 * 1 2 3 27 27 H 1.08993 * 109.47044 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46985 * 240.00476 * 2 1 3 29 29 H 1.08998 * 109.47981 * 120.00632 * 2 1 3 30 30 H 1.09000 * 109.46703 * 60.00303 * 3 2 1 31 31 H 1.09000 * 109.46727 * 300.00502 * 3 2 1 32 32 H 1.07998 * 120.02597 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.97592 * 179.79533 * 7 6 5 34 34 H 1.08993 * 109.47266 * 20.00163 * 9 8 7 35 35 H 1.09001 * 109.47240 * 140.00495 * 9 8 7 36 36 H 1.00903 * 110.99617 * 56.04561 * 10 9 8 37 37 H 1.08998 * 109.46612 * 179.97438 * 13 11 10 38 38 H 1.08995 * 109.47294 * 300.00149 * 13 11 10 39 39 H 1.09003 * 109.46854 * 60.00001 * 13 11 10 40 40 H 0.97004 * 119.99877 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.47471 * 89.99834 * 23 22 8 42 42 H 1.09005 * 109.47005 * 209.99445 * 23 22 8 43 43 H 1.08997 * 109.46936 * 329.99322 * 23 22 8 44 44 H 1.07997 * 120.02798 * 180.02562 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0860 2.6534 -0.0001 6 6 3.3315 3.8178 0.0072 7 6 3.9609 5.0472 0.0032 8 6 5.3419 5.1182 0.0022 9 6 6.0261 6.4610 0.0038 10 7 6.4616 6.7903 -1.3600 11 6 7.1338 8.0959 -1.3972 12 1 6.6632 8.7675 -0.6791 13 6 8.6107 7.9195 -1.0386 14 6 7.0193 8.6806 -2.7815 15 1 6.4989 8.1369 -3.5560 16 6 7.5781 9.9102 -3.0588 17 7 7.4786 10.4202 -4.2670 18 14 8.4776 10.8510 -1.7190 19 1 9.9138 10.4737 -1.7281 20 1 8.3473 12.3096 -1.9656 21 1 7.8866 10.5176 -0.3981 22 6 6.0960 3.9596 0.0002 23 6 7.6008 4.0407 -0.0003 24 6 5.4711 2.7273 -0.0003 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.2529 3.7628 0.0121 33 1 3.3740 5.9539 0.0055 34 1 5.3310 7.2226 0.3570 35 1 6.8931 6.4263 0.6635 36 1 5.6848 6.7654 -2.0035 37 1 9.1095 8.8883 -1.0667 38 1 8.6936 7.4966 -0.0375 39 1 9.0812 7.2480 -1.7568 40 1 7.8720 11.2851 -4.4622 41 1 7.9641 4.0587 1.0272 42 1 8.0113 3.1722 -0.5155 43 1 7.9155 4.9496 -0.5130 44 1 6.0607 1.8224 -0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179479700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:01 Heat of formation + Delta-G solvation = -26.122676 kcal Electronic energy + Delta-G solvation = -21113.801146 eV Core-core repulsion = 18030.883135 eV Total energy + Delta-G solvation = -3082.918011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20634 -38.21980 -35.93189 -34.24395 -32.65931 -32.30462 -30.94711 -28.81791 -27.11892 -26.36031 -25.28650 -23.95436 -22.43743 -21.48567 -20.32240 -19.85317 -17.69820 -16.87079 -16.46287 -16.31214 -15.53328 -14.99086 -14.45524 -14.39948 -14.00709 -13.85728 -13.65058 -13.20163 -13.02806 -12.92049 -12.56325 -12.48169 -12.18948 -12.18489 -11.99482 -11.82595 -11.59522 -11.40909 -11.27001 -10.90835 -10.81615 -10.62262 -10.60680 -10.43417 -10.09273 -9.50093 -9.03472 -8.62472 -8.61203 -7.94707 -7.47571 -6.09994 -4.09828 1.48153 1.56930 3.08622 3.26558 3.35764 3.38321 3.85419 4.38094 4.55330 4.55762 4.87871 4.90386 4.94200 5.06489 5.09047 5.13455 5.22405 5.28418 5.37814 5.41926 5.55206 5.57907 5.60867 5.71094 5.82387 5.89752 5.90666 5.98810 6.10034 6.19293 6.35114 6.39970 6.48012 6.53442 6.60882 6.72369 6.80058 6.92197 6.96314 7.38550 7.46494 7.57694 7.93460 8.34826 8.61522 8.95239 9.52150 11.03011 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.003152 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.871356 B = 8881.612492 C = 9314.212353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.320 6.320 5 C 0.124 3.876 6 C -0.217 4.217 7 C -0.072 4.072 8 C -0.109 4.109 9 C 0.097 3.903 10 N -0.671 5.671 11 C 0.181 3.819 12 H 0.000 1.000 13 C -0.138 4.138 14 C -0.519 4.519 15 H 0.078 0.922 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.298 1.298 21 H -0.269 1.269 22 C -0.020 4.020 23 C -0.124 4.124 24 C -0.158 4.158 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.341 0.659 37 H 0.036 0.964 38 H 0.026 0.974 39 H 0.058 0.942 40 H 0.264 0.736 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.798 -17.622 11.466 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.234 6.234 5 C 0.079 3.921 6 C -0.235 4.235 7 C -0.091 4.091 8 C -0.110 4.110 9 C -0.032 4.032 10 N -0.303 5.303 11 C 0.072 3.928 12 H 0.018 0.982 13 C -0.196 4.196 14 C -0.557 4.557 15 H 0.096 0.904 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.226 1.226 21 H -0.194 1.194 22 C -0.020 4.020 23 C -0.180 4.180 24 C -0.176 4.176 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.159 0.841 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.080 -18.000 11.391 23.156 hybrid contribution -0.501 1.368 0.670 1.603 sum -9.581 -16.632 12.062 22.669 Atomic orbital electron populations 1.21690 0.94339 1.02439 1.02263 1.21480 0.95964 0.95030 1.03630 1.22824 0.78892 0.98515 1.01392 1.86012 1.20937 1.27413 1.89021 1.18901 0.92187 0.83774 0.97198 1.21092 0.99524 0.92383 1.10539 1.20863 0.94094 0.96906 0.97250 1.19780 0.92931 0.95355 1.02912 1.20862 0.97589 0.91170 0.93561 1.60555 1.31953 1.33393 1.04403 1.19545 0.90729 0.85316 0.97166 0.98204 1.22085 0.99244 0.99585 0.98654 1.21103 1.36454 1.03304 0.94835 0.90354 1.24940 0.95753 0.97158 0.95294 1.69896 1.45430 1.18534 1.19810 0.86797 0.80284 0.78004 0.82719 1.20490 1.22596 1.19376 1.19556 0.96357 0.91157 0.94978 1.20949 0.90476 1.04626 1.01970 1.20258 0.91101 0.98080 1.08207 0.92401 0.92298 0.91795 0.90840 0.90940 0.92225 0.92083 0.86030 0.86009 0.95442 0.90876 0.84084 0.94508 0.95528 0.92278 0.92591 0.91686 0.91933 0.88432 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.91 6.30 -26.73 -0.17 -1.08 16 3 C 0.06 0.55 4.74 37.16 0.18 0.72 16 4 O -0.32 -4.05 10.14 -19.41 -0.20 -4.24 16 5 C 0.12 1.72 6.69 -39.22 -0.26 1.46 16 6 C -0.22 -2.85 9.04 -39.43 -0.36 -3.21 16 7 C -0.07 -1.03 9.66 -39.61 -0.38 -1.41 16 8 C -0.11 -1.69 5.39 -104.60 -0.56 -2.25 16 9 C 0.10 1.65 4.73 -4.97 -0.02 1.63 16 10 N -0.67 -13.54 5.63 -109.22 -0.61 -14.16 16 11 C 0.18 4.24 2.19 -68.86 -0.15 4.09 16 12 H 0.00 0.01 6.86 -51.93 -0.36 -0.35 16 13 C -0.14 -3.03 8.90 37.16 0.33 -2.70 16 14 C -0.52 -14.45 9.17 -34.44 -0.32 -14.76 16 15 H 0.08 2.36 7.86 -52.49 -0.41 1.95 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 17 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 18 Si 0.89 22.01 24.37 -169.99 -4.14 17.86 16 19 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 20 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 22 C -0.02 -0.29 5.88 -104.65 -0.62 -0.91 16 23 C -0.12 -1.68 9.26 36.00 0.33 -1.35 16 24 C -0.16 -2.22 9.64 -39.43 -0.38 -2.60 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 31 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 32 H 0.12 1.32 6.30 -52.49 -0.33 0.99 16 33 H 0.12 1.57 8.03 -52.49 -0.42 1.15 16 34 H 0.03 0.47 7.91 -51.93 -0.41 0.05 16 35 H 0.07 1.21 6.57 -51.93 -0.34 0.87 16 36 H 0.34 7.08 8.21 -39.29 -0.32 6.76 16 37 H 0.04 0.84 3.27 -51.93 -0.17 0.67 16 38 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.76 8.09 -51.93 -0.42 0.35 16 43 H 0.10 1.53 6.34 -51.93 -0.33 1.21 16 44 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -30.29 347.14 -8.32 -38.61 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.26 Total: 4.23 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.11 Total: -20.91 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.16 Total: -40.79 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.20 Total: -4.24 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.29 -8.32 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179479700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.489 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds