Wall clock time and date at job start Mon Mar 30 2020 02:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47319 * 2 1 4 4 O 1.42901 * 109.47274 * 180.02562 * 3 2 1 5 5 C 1.35896 * 117.00083 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.05426 * 0.29963 * 5 4 3 7 7 C 1.38119 * 119.94413 * 180.21111 * 6 5 4 8 8 C 1.38288 * 120.05366 * 359.50981 * 7 6 5 9 9 C 1.50704 * 119.94343 * 180.25711 * 8 7 6 10 10 N 1.46900 * 109.47317 * 260.00087 * 9 8 7 11 11 C 1.46895 * 111.00159 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47497 * 325.00181 * 11 10 9 13 13 C 1.53007 * 109.46903 * 85.00261 * 11 10 9 14 14 C 1.50702 * 109.47168 * 204.99911 * 11 10 9 15 15 H 1.08000 * 120.00279 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99820 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99847 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 120.00257 * 0.02562 * 16 14 11 19 19 H 1.48501 * 109.47161 * 89.99303 * 18 16 14 20 20 H 1.48500 * 109.47196 * 209.99871 * 18 16 14 21 21 H 1.48499 * 109.46785 * 329.99504 * 18 16 14 22 22 C 1.38240 * 120.11591 * 0.24016 * 8 7 6 23 23 C 1.50696 * 119.97662 * 180.02562 * 22 8 7 24 24 C 1.38171 * 120.05202 * 359.97438 * 22 8 7 25 25 H 1.09000 * 109.46526 * 299.99794 * 1 2 3 26 26 H 1.08992 * 109.47317 * 59.99503 * 1 2 3 27 27 H 1.08993 * 109.47044 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46985 * 240.00476 * 2 1 3 29 29 H 1.08998 * 109.47981 * 120.00632 * 2 1 3 30 30 H 1.09000 * 109.46703 * 60.00303 * 3 2 1 31 31 H 1.09000 * 109.46727 * 300.00502 * 3 2 1 32 32 H 1.07998 * 120.02597 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.97592 * 179.79533 * 7 6 5 34 34 H 1.08993 * 109.47266 * 20.00163 * 9 8 7 35 35 H 1.09001 * 109.47240 * 140.00495 * 9 8 7 36 36 H 1.00903 * 110.99617 * 56.04561 * 10 9 8 37 37 H 1.08998 * 109.46612 * 179.97438 * 13 11 10 38 38 H 1.08995 * 109.47294 * 300.00149 * 13 11 10 39 39 H 1.09003 * 109.46854 * 60.00001 * 13 11 10 40 40 H 0.97004 * 119.99877 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.47471 * 89.99834 * 23 22 8 42 42 H 1.09005 * 109.47005 * 209.99445 * 23 22 8 43 43 H 1.08997 * 109.46936 * 329.99322 * 23 22 8 44 44 H 1.07997 * 120.02798 * 180.02562 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0860 2.6534 -0.0001 6 6 3.3315 3.8178 0.0072 7 6 3.9609 5.0472 0.0032 8 6 5.3419 5.1182 0.0022 9 6 6.0261 6.4610 0.0038 10 7 6.4616 6.7903 -1.3600 11 6 7.1338 8.0959 -1.3972 12 1 6.6632 8.7675 -0.6791 13 6 8.6107 7.9195 -1.0386 14 6 7.0193 8.6806 -2.7815 15 1 6.4989 8.1369 -3.5560 16 6 7.5781 9.9102 -3.0588 17 7 7.4786 10.4202 -4.2670 18 14 8.4776 10.8510 -1.7190 19 1 9.9138 10.4737 -1.7281 20 1 8.3473 12.3096 -1.9656 21 1 7.8866 10.5176 -0.3981 22 6 6.0960 3.9596 0.0002 23 6 7.6008 4.0407 -0.0003 24 6 5.4711 2.7273 -0.0003 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.2529 3.7628 0.0121 33 1 3.3740 5.9539 0.0055 34 1 5.3310 7.2226 0.3570 35 1 6.8931 6.4263 0.6635 36 1 5.6848 6.7654 -2.0035 37 1 9.1095 8.8883 -1.0667 38 1 8.6936 7.4966 -0.0375 39 1 9.0812 7.2480 -1.7568 40 1 7.8720 11.2851 -4.4622 41 1 7.9641 4.0587 1.0272 42 1 8.0113 3.1722 -0.5155 43 1 7.9155 4.9496 -0.5130 44 1 6.0607 1.8224 -0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179479700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:00 Heat of formation + Delta-G solvation = -44.492553 kcal Electronic energy + Delta-G solvation = -21114.597724 eV Core-core repulsion = 18030.883135 eV Total energy + Delta-G solvation = -3083.714589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22407 -39.29881 -37.53786 -35.01917 -34.44945 -33.40362 -32.50427 -30.18629 -28.17624 -27.29474 -27.07654 -25.39082 -23.31583 -22.39000 -21.75546 -21.30065 -18.89372 -18.66419 -17.56761 -17.22723 -17.06706 -16.26512 -15.74419 -15.62653 -15.19843 -15.06361 -14.98746 -14.56082 -14.22887 -14.11152 -14.03819 -13.54428 -13.48135 -13.25625 -13.00758 -12.94761 -12.77686 -12.67908 -12.62690 -12.11149 -12.05129 -12.02310 -11.84794 -11.60833 -11.48108 -11.38588 -11.04163 -10.76793 -9.69009 -9.18712 -8.95985 -8.30733 -6.35342 0.41269 0.45849 1.31891 1.36061 1.46804 2.22404 2.31474 2.74424 3.04789 3.63246 3.83147 3.92440 3.94824 3.98688 4.09378 4.26085 4.29046 4.39274 4.42095 4.54848 4.55361 4.61706 4.71528 4.73780 4.77449 4.81264 4.89382 4.92355 4.95252 5.05402 5.10499 5.11417 5.17859 5.26390 5.36100 5.40537 5.50344 5.53644 5.64830 5.82071 5.87518 6.00205 6.48391 6.51366 6.65772 6.82210 7.31314 8.85828 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.003152 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.871356 B = 8881.612492 C = 9314.212353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.051 3.949 4 O -0.330 6.330 5 C 0.122 3.878 6 C -0.217 4.217 7 C -0.078 4.078 8 C -0.128 4.128 9 C 0.103 3.897 10 N -0.671 5.671 11 C 0.186 3.814 12 H -0.003 1.003 13 C -0.134 4.134 14 C -0.523 4.523 15 H 0.038 0.962 16 C 0.013 3.987 17 N -0.948 5.948 18 Si 0.954 3.046 19 H -0.265 1.265 20 H -0.299 1.299 21 H -0.249 1.249 22 C -0.027 4.027 23 C -0.121 4.121 24 C -0.168 4.168 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.333 0.667 37 H 0.030 0.970 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.266 0.734 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 -18.641 13.685 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.024 4.024 4 O -0.245 6.245 5 C 0.076 3.924 6 C -0.236 4.236 7 C -0.096 4.096 8 C -0.129 4.129 9 C -0.025 4.025 10 N -0.301 5.301 11 C 0.077 3.923 12 H 0.014 0.986 13 C -0.192 4.192 14 C -0.561 4.561 15 H 0.056 0.944 16 C -0.185 4.185 17 N -0.588 5.588 18 Si 0.781 3.219 19 H -0.191 1.191 20 H -0.227 1.227 21 H -0.173 1.173 22 C -0.028 4.028 23 C -0.177 4.177 24 C -0.187 4.187 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.151 0.849 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.350 -19.051 13.631 25.222 hybrid contribution -0.551 1.541 -0.071 1.638 sum -9.901 -17.510 13.559 24.258 Atomic orbital electron populations 1.21684 0.92869 1.03241 1.02634 1.21496 0.97110 0.93720 1.03476 1.23112 0.77189 1.00029 1.02058 1.86013 1.22817 1.26911 1.88729 1.19070 0.92394 0.84437 0.96471 1.21313 1.00724 0.91741 1.09780 1.21041 0.93842 0.97831 0.96914 1.19710 0.93550 0.94714 1.04928 1.20841 0.98047 0.92143 0.91490 1.60532 1.31950 1.31307 1.06355 1.19393 0.92366 0.86488 0.94096 0.98573 1.21987 0.97420 0.99316 1.00437 1.21399 1.35309 1.03207 0.96201 0.94386 1.25820 0.96805 0.98295 0.97582 1.70047 1.47203 1.19274 1.22255 0.85771 0.79557 0.76177 0.80366 1.19124 1.22728 1.17313 1.19712 0.96963 0.91230 0.94872 1.20920 0.89880 1.03985 1.02905 1.20435 0.91642 0.98287 1.08338 0.91844 0.92118 0.90820 0.91233 0.90899 0.91186 0.91692 0.83805 0.85085 0.95342 0.90121 0.84930 0.95135 0.92209 0.92928 0.92477 0.89976 0.90861 0.90549 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.56 6.30 30.60 0.19 -1.37 16 3 C 0.05 0.85 4.74 71.98 0.34 1.19 16 4 O -0.33 -7.84 10.14 -92.38 -0.94 -8.77 16 5 C 0.12 3.17 6.69 22.51 0.15 3.32 16 6 C -0.22 -5.33 9.04 22.37 0.20 -5.13 16 7 C -0.08 -2.10 9.66 22.25 0.22 -1.89 16 8 C -0.13 -3.83 5.39 -19.85 -0.11 -3.94 16 9 C 0.10 3.38 4.73 85.56 0.41 3.79 16 10 N -0.67 -26.84 5.63 -499.47 -2.81 -29.65 16 11 C 0.19 8.58 2.19 44.17 0.10 8.67 16 12 H 0.00 -0.15 6.86 -2.39 -0.02 -0.17 16 13 C -0.13 -5.60 8.90 71.98 0.64 -4.96 16 14 C -0.52 -29.72 9.17 25.60 0.23 -29.48 16 15 H 0.04 2.40 7.86 -2.91 -0.02 2.38 16 16 C 0.01 0.73 5.45 84.65 0.46 1.19 16 17 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 18 Si 0.95 44.89 24.37 68.60 1.67 46.56 16 19 H -0.27 -11.88 6.87 99.48 0.68 -11.19 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 21 H -0.25 -10.85 6.53 99.48 0.65 -10.20 16 22 C -0.03 -0.77 5.88 -19.88 -0.12 -0.88 16 23 C -0.12 -3.08 9.26 71.23 0.66 -2.42 16 24 C -0.17 -4.51 9.64 22.37 0.22 -4.30 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.02 7.65 -2.39 -0.02 1.01 16 31 H 0.06 1.03 7.68 -2.39 -0.02 1.01 16 32 H 0.14 2.78 6.30 -2.91 -0.02 2.76 16 33 H 0.13 3.21 8.03 -2.91 -0.02 3.19 16 34 H 0.03 0.93 7.91 -2.39 -0.02 0.91 16 35 H 0.08 2.50 6.57 -2.39 -0.02 2.48 16 36 H 0.33 14.10 8.21 -89.69 -0.74 13.37 16 37 H 0.03 1.31 3.27 -2.39 -0.01 1.30 16 38 H 0.06 2.09 7.45 -2.39 -0.02 2.07 16 39 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 42 H 0.07 1.68 8.09 -2.38 -0.02 1.66 16 43 H 0.08 2.30 6.34 -2.39 -0.02 2.28 16 44 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -65.46 347.14 2.69 -62.77 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.16 Total: 24.92 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 4.30 Total: -36.84 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -2.51 Total: -88.64 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.94 Total: -8.77 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.67 Total: 46.56 kcal Total: -65.46 2.69 -62.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179479700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.282 kcal (2) G-P(sol) polarization free energy of solvation -65.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds