Wall clock time and date at job start Mon Mar 30 2020 02:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46899 * 2 1 4 4 N 1.46891 * 109.47125 * 184.53339 * 3 2 1 5 5 C 1.46905 * 110.99903 * 304.93319 * 4 3 2 6 6 C 1.50695 * 109.47083 * 293.95440 * 5 4 3 7 7 H 1.08001 * 120.00130 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00111 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99964 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00152 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47017 * 60.00315 * 10 8 6 12 12 H 1.48503 * 109.47182 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47523 * 300.00171 * 10 8 6 14 14 C 1.46898 * 111.00209 * 68.88553 * 4 3 2 15 15 C 1.50707 * 109.47218 * 76.13743 * 14 4 3 16 16 C 1.38163 * 120.02781 * 254.89245 * 15 14 4 17 17 C 1.38247 * 120.05427 * 179.79191 * 16 15 14 18 18 C 1.38286 * 120.11219 * 0.45837 * 17 16 15 19 19 C 1.50694 * 119.97115 * 179.77264 * 18 17 16 20 20 C 1.53002 * 109.47051 * 270.01792 * 19 18 17 21 21 C 1.38125 * 120.05465 * 359.79063 * 18 17 16 22 22 C 1.38711 * 120.02357 * 75.16180 * 15 14 4 23 23 O 1.35896 * 120.06003 * 359.95835 * 22 15 14 24 24 H 1.08996 * 109.47422 * 60.00390 * 1 2 3 25 25 H 1.09004 * 109.46511 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47077 * 299.99865 * 1 2 3 27 27 H 1.09000 * 109.47077 * 240.00135 * 2 1 3 28 28 H 1.08993 * 109.46925 * 119.99564 * 2 1 3 29 29 H 1.08999 * 109.47149 * 64.52927 * 3 2 1 30 30 H 1.09001 * 109.46964 * 304.53122 * 3 2 1 31 31 H 1.09002 * 109.46993 * 53.95529 * 5 4 3 32 32 H 1.08999 * 109.47229 * 173.95508 * 5 4 3 33 33 H 0.97004 * 119.99904 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47422 * 196.13645 * 14 4 3 35 35 H 1.09003 * 109.47513 * 316.14056 * 14 4 3 36 36 H 1.08001 * 119.97005 * 0.02562 * 16 15 14 37 37 H 1.07995 * 119.94101 * 180.20702 * 17 16 15 38 38 H 1.08992 * 109.47451 * 30.02284 * 19 18 17 39 39 H 1.09007 * 109.46856 * 150.01972 * 19 18 17 40 40 H 1.09006 * 109.46884 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.46948 * 300.00252 * 20 19 18 42 42 H 1.08998 * 109.46894 * 60.00269 * 20 19 18 43 43 H 1.08003 * 120.02953 * 179.97438 * 21 18 17 44 44 H 0.96705 * 113.99523 * 89.99975 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4440 -0.1095 5 6 4.1129 0.6299 0.9515 6 6 3.8527 1.2727 2.2894 7 1 3.2921 2.1941 2.3459 8 6 4.3302 0.6845 3.4413 9 7 5.0133 -0.4372 3.3724 10 14 4.0083 1.4817 5.0997 11 1 2.5439 1.5780 5.3267 12 1 4.6228 0.6586 6.1722 13 1 4.6027 2.8424 5.1187 14 6 3.9341 0.9844 -1.4370 15 6 3.7196 2.0855 -2.4435 16 6 2.6688 2.0101 -3.3374 17 6 2.4690 3.0219 -4.2580 18 6 3.3254 4.1071 -4.2930 19 6 3.1076 5.2057 -5.3012 20 6 3.8771 4.8812 -6.5832 21 6 4.3804 4.1847 -3.4049 22 6 4.5803 3.1727 -2.4767 23 8 5.6174 3.2470 -1.6016 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.7445 1.9324 0.9278 30 1 1.6119 1.9792 -0.8466 31 1 3.6773 -0.3692 0.9375 32 1 5.1878 0.5600 0.7849 33 1 5.3496 -0.8508 4.1829 34 1 4.9914 0.7213 -1.4062 35 1 3.3504 0.1101 -1.7252 36 1 2.0007 1.1618 -3.3144 37 1 1.6451 2.9627 -4.9536 38 1 2.0443 5.2868 -5.5263 39 1 3.4654 6.1505 -4.8919 40 1 3.7192 5.6757 -7.3127 41 1 4.9405 4.8002 -6.3580 42 1 3.5194 3.9364 -6.9924 43 1 5.0493 5.0322 -3.4328 44 1 6.4340 2.8419 -1.9243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236795151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:08 Heat of formation + Delta-G solvation = -52.229232 kcal Electronic energy + Delta-G solvation = -21931.844589 eV Core-core repulsion = 18847.794512 eV Total energy + Delta-G solvation = -3084.050077 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98921 -38.88325 -37.80120 -35.09151 -34.67389 -33.41316 -31.26385 -30.68460 -28.81875 -27.37945 -25.72905 -23.94110 -23.67781 -23.40713 -21.75328 -20.76024 -18.70140 -18.35457 -17.21360 -16.83717 -16.73940 -16.17857 -16.09718 -15.86010 -15.09815 -14.87256 -14.77708 -14.50664 -14.33402 -14.19495 -13.74601 -13.30666 -13.15378 -13.02962 -12.77967 -12.72668 -12.55544 -12.47742 -12.33319 -12.27061 -12.21722 -12.07717 -11.75591 -11.72419 -11.39432 -11.24536 -11.07922 -10.57486 -9.64787 -9.29195 -8.78771 -8.17201 -6.25722 0.39906 0.45692 1.38802 1.42163 1.49799 2.40926 2.72552 3.14719 3.42553 3.54239 3.84788 3.96028 4.06472 4.14955 4.16843 4.29983 4.37227 4.47979 4.53735 4.57140 4.60960 4.70734 4.74144 4.78962 4.87778 5.01216 5.04733 5.12665 5.13458 5.16481 5.18662 5.21997 5.34039 5.42980 5.43807 5.49069 5.53149 5.67361 5.70965 5.73207 6.03780 6.11645 6.44351 6.72426 6.89931 7.00567 7.42863 8.92973 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.004458 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.092662 B = 6278.655846 C = 6980.433835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.153 4.153 3 C 0.074 3.926 4 N -0.532 5.532 5 C 0.211 3.789 6 C -0.515 4.515 7 H 0.053 0.947 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.099 3.901 15 C -0.116 4.116 16 C -0.100 4.100 17 C -0.129 4.129 18 C -0.071 4.071 19 C -0.082 4.082 20 C -0.143 4.143 21 C -0.157 4.157 22 C 0.115 3.885 23 O -0.505 6.505 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.072 0.928 31 H -0.021 1.021 32 H -0.005 1.005 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.132 0.868 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 7.150 -19.455 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.192 4.192 3 C -0.054 4.054 4 N -0.255 5.255 5 C 0.085 3.915 6 C -0.553 4.553 7 H 0.071 0.929 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.198 1.198 14 C -0.028 4.028 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.147 4.147 18 C -0.071 4.071 19 C -0.119 4.119 20 C -0.200 4.200 21 C -0.176 4.176 22 C 0.070 3.930 23 O -0.316 6.316 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.090 0.910 31 H -0.004 1.004 32 H 0.013 0.987 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.150 0.850 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -5.774 7.798 -18.919 21.262 hybrid contribution 0.553 -1.138 1.084 1.666 sum -5.221 6.660 -17.836 19.741 Atomic orbital electron populations 1.21611 0.93703 1.01921 1.02075 1.22027 0.97797 0.98770 1.00648 1.21959 0.87419 0.95294 1.00733 1.62158 1.07712 1.54143 1.01454 1.19377 0.92459 0.90451 0.89224 1.21363 1.33896 1.08254 0.91785 0.92880 1.25805 0.95043 0.95515 1.02995 1.70069 1.38094 1.19708 1.29604 0.85548 0.78703 0.78384 0.78663 1.19305 1.20626 1.19789 1.20813 0.99736 0.93709 0.88555 1.20240 0.97838 0.96261 0.97357 1.21113 0.96223 0.99744 0.94801 1.21233 1.00381 0.93560 0.99535 1.20031 0.94061 0.96762 0.96282 1.20584 1.02143 0.95424 0.93740 1.21726 0.99849 1.02199 0.96270 1.21408 1.00672 0.99611 0.95867 1.18532 0.90851 0.93740 0.89901 1.84922 1.22052 1.81601 1.43032 0.91204 0.92187 0.93264 0.92342 0.94339 0.93130 0.90998 1.00355 0.98730 0.92814 0.92356 0.93907 0.84934 0.83434 0.89600 0.90746 0.90936 0.93239 0.92493 0.85004 0.74659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.15 -5.68 5.16 30.60 0.16 -5.52 16 3 C 0.07 3.00 5.00 86.31 0.43 3.43 16 4 N -0.53 -24.19 4.62 -905.37 -4.18 -28.37 16 5 C 0.21 11.59 4.36 85.55 0.37 11.96 16 6 C -0.51 -30.37 8.58 25.60 0.22 -30.15 16 7 H 0.05 3.15 7.10 -2.91 -0.02 3.13 16 8 C 0.00 0.24 5.46 84.65 0.46 0.70 16 9 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 10 Si 0.96 46.00 29.54 68.60 2.03 48.02 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 14 C 0.10 3.76 4.64 85.56 0.40 4.16 16 15 C -0.12 -3.74 4.84 -19.77 -0.10 -3.83 16 16 C -0.10 -2.61 9.03 22.25 0.20 -2.41 16 17 C -0.13 -2.79 9.70 22.28 0.22 -2.57 16 18 C -0.07 -1.55 5.13 -19.88 -0.10 -1.65 16 19 C -0.08 -1.25 6.06 29.85 0.18 -1.07 16 20 C -0.14 -1.86 9.89 71.98 0.71 -1.14 16 21 C -0.16 -4.13 9.64 22.37 0.22 -3.92 16 22 C 0.11 3.68 6.68 22.51 0.15 3.83 16 23 O -0.50 -17.47 12.83 -92.38 -1.19 -18.66 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 2.03 6.25 -2.39 -0.01 2.01 16 28 H 0.04 1.73 6.48 -2.39 -0.02 1.72 16 29 H 0.05 2.28 7.00 -2.39 -0.02 2.26 16 30 H 0.07 2.58 6.95 -2.39 -0.02 2.56 16 31 H -0.02 -1.22 5.98 -2.39 -0.01 -1.23 16 32 H -0.01 -0.33 7.83 -2.39 -0.02 -0.34 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.06 2.30 7.59 -2.39 -0.02 2.28 16 35 H 0.04 1.52 5.85 -2.39 -0.01 1.51 16 36 H 0.13 3.04 8.00 -2.91 -0.02 3.02 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 39 H 0.07 1.10 8.08 -2.38 -0.02 1.08 16 40 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 44 H 0.40 9.96 9.06 -74.05 -0.67 9.29 16 Total: -1.00 -70.11 353.22 1.48 -68.63 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.30 Total: 18.89 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 4.23 Total: -31.36 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.90 Total: -85.53 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -1.19 Total: -18.66 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -70.11 1.48 -68.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236795151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.401 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds